Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->LBD16       --------->HSFB2a(2)       <---------HSFB2a(2)                               <---------At4g35610       <---------LBD16                                   --------->At4g35610 <---------MYB52(1)                                 --------->ANAC58                <----------DOF2 ------->ID1                               <---------MYB46(3)            ------->MYC3 -----DOF2                                <--------P--------->ANAC58     <-------MYC3 >ARR11(3)                               <---------MYB52(1)   --------->YAB1 <---------YAB1 -ARR11(3)<------ZmHOX2a(1)          ----------->RAV1(2) <------NtERF2<---------ALFIN1   ttcgttattccaggaagagcatttgagttctgcccaattacctggtagttcatcaaggcagctatagtagcaacacgttttgattactttggagagaagt  8617900                                                               <---------ZAT2                                                               --------->At4g35610                                                               <---------At4g35610                                                               --------->ZAT2                                                         <---------AtLEC2                                                      <----------DOF2                                                     ------>ZmHOX2a(2)                                                   <---------AGP1                                <---                                                   --------->ARR11(3)                          <-----                                                   --------->AGP1                              ------                                                   --------->ARR14(2)                         -------                                                   <---------ARR14(2)                         <------                 <---------AtLEC2  --------->TOE1(2)<------ZmHOX2a(2)                    <---------ICU4       <------ZmHOX2a(1)          --------->YAB1   <---------ARR11(3)             <---------ARR11(3)    <---------LBD16   --------->GLK1(2)            <---------ARR14(3)       --------->YAB1<----------DOF2    <-----------RAV1(2)          <---------ATHB12  --------->ARR14(3)      ----------->HVH21  =======   tttgtctcaggaaacatttgcaagaagctgttccaaacatgagaaaaacacaagatctttcatggagctgagttgcaatgacaagatgtaatcttttctt  8618000                                                                            <---------ANAC58 ------AHL20(2)               <---------YAB1                                <---------ANAC58 ----------AGL15          <---------------AGL15                     <---------WOX13(1) --------->AGL15          <---------DAG2                          --------->ATHB12             ------ -->TOE2(3)   <---------AHL20(2)         <-----------RAV1(1)     <---------YAB1      <---------AHL20(2) -----------AGL3      --------->GLK1(1) <---------TOE2(3)      <---------At4g35610  --------->AHL20(2) =========================================MADS_MADS       <---------ZAT6  --------->ARR11(3) <-------TEIL   aaattggtttctgtatattatgggattgccttatgatgtattaatgtgggatgaaatattgtgttatctgattgaatgtcttgagatttaatagatgcac  8618100                                                                     <------ZmHOX2a(2)                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)                                                                   <---------At4g35610                                                             --------->ICU4                                                          --------->AHL20(2)                                                        --------->ANAC58                                                        --------->ANAC58              ----------->GT1                                                        ----------->GT1           <---------YAB1          <----------DOF2                               --------->ANAC55(2)     --------->YAB1       <---------ARR11(3)                               <---------ANAC55(2) <---------AHL20(2) <-----------GT1                                        --------->ANAC46 --------->TOE2(3) ->TEIL--------->ARR11(3)            ------>ZmHOX2a(1)  --------->ANAC55(1)--------->AHL20(2)   ttgtaacaacatctttatctaaacacatagaaatctatcctctgtgtattagtcaaacaagtaattttgagatcacattaaatcaaaattgttaaaacag  8618200                                                                                            ---------                                                      <------MYB83                        <------MYB83                                                      <------MYB46(1)                <---------TOE1(2)                                                      ----------->GT1             <---------ANAC58                                              <-------GAMYB                       <---------ANAC58  <                                  <---------TOE2(3)  --------->MYB59              <---------ANAC46 <-                             <---------YAB1  <---------MYB46(3)              <-------GAMYB<------MYB46(1)                        ----------->GT1      ----------->GT1                --------->MYB52(2)  -----                       --------->DAG2  <---------AHL20(2)                   <---------MYB46(3)-------                      ---------->DOF2 --------->AHL20(2)              <---------LBD16<---------TOE2(2)   gtttcaacttatttagtagaaacaaaaagttatttttagattaaatgtggttaatttggttaaatacacattccctggtcgttgtcgtatgtaggtgtgt  8618300                                <----------DOF2                                       ---------->DOF2 >ALFIN1                        --------------->AGL15                            <------MYB83 ----------DOF2                 <---------------AGL15                            <------MYB46(1) --------DAG2            --------->DAG2                                          ----------->GT1 ----->ID1             ---------->DOF2                 <---------LBD16         <--------P -->ALFIN1       --------->MYB52(1)     *TSS  --------->TOE2(3)                XXXXXXXXXXXXXXXXXXXX>MIR3440B-3P   cccttttgacaaaacaaacaaacagaaaaggtttctttattcagacaacatcaaaactggggaagaaccaaaactaatagagttggtcaaaagaaacatt  8618400                          ------>ZmHOX2a(2)                        --------->ARR11(3)                                             ------>ZmHOX2a(2)                        <---------AGP1                                                --------->GLK1(1)                        --------->ARR14(3)                                            <---------GLK1(1)                        <---------ARR14(3)                                           <---------ARR14(2)                        <---------ARR11(3)                                           --------->ARR14(2)                        <---------ARR14(2)                                           <---------AGP1                        --------->ARR14(2)             ----------->GT1               <---------ARR11(3)                    ---------->DOF2                   --------->DAG2                 --------->ARR11(3)          ---------->DOF2<------ZmHOX2a(2)  <---------YAB1        --------->HSFB2a(1)------->TEIL   ------------------------>ANAC81 --------->GLK1(1) ---------->DOF2       <---------CCA1(2)  <------   tgcaaaaaaaaaaaaagagaggcaaagatctcgagagatttcaattttcaatggagaaagtgaatcaaaccttcttcttatctcatggatctccaacttt  8618500                                                            ------>ZmHOX2a(1)                                                           --------->TOE2(3)                                                     <---------ARR11(3)                       -------            <---------ANAC46                      --------->DAG2                             <-------            <---------ANAC58                     ---------->DOF2                           <---------At4g35610 ----DOF2   <---------ANAC58         <---------ATHB12--------->ARR11(3)                    --------->At4g35610   gagcatagatgattccttggaagcgagacaattcttcaaatcatggactcaaaaagttcttcctcaaaaacccaaatcgattttagtcatctctgctcat  8618600                                                                           <---------TOE1(2)        --------->ARR14(2)                                    <---------ANAC58       ------>MYB83                           <------ZmHOX2a(2)           ------>ZmHOX2a(1)    --------->ANAC58             --------->ANAC46             <---------ANAC58     ----------->GT1    --------->ANAC58   <---------ALFIN1       ===================================HOX2a_HOX2a -->ATHB12        <-----------HVH21          --------->ARR14(2)         ------>ZmHOX2a(2)         --- --YAB1------>MYB46(1)<---------ZAT14        <---------ARR14(2)   ----------->RAV1(2)           -----   tgggacaccaaattcccatctgtcaacactgttcttcgcaataacacgatccacgatttctctggcttccctgatcctatgtacaaggtaaaaccaaaaa  8618700                                                   <-------TEIL                                                <------ZmHOX2a(1)            ---------->ID1            <---------ARR11(3)                            --------->At4g35610      <----------DOF2         <---------ZAT18 <---------TOE2(3)      --------->AHL20(2)      <---------DAG2  <---------RVE1(1)  <-------GAMYB ---------->DOF2       --------->AHL20(2)   <-----------GT1   <---------GLK1(2)--------->ARR11(3)--------->DAG2    ----------->GT1 ------>AHL20(2)     --------->ARR11(3) ===============HOX2a_HOX2a   <---------AHL20(2)     <-------- ---->AHL20(2)       <---------ARR11(3) ------>ZmHOX2a(2)     <---------YAB1 <---------AHL20(2)   ---   aaatataactttttgtctcaacagatttttagggctcttagatcgttgaaggatgcataaagttttgatttttaaatgtttaaatcatctctcttgggtt  8618800  Previous    Next  AGI:  At4g15090.1    Description:  FAR1 (FAR-RED IMPAIRED RESPONSE 1). similar to FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) [Arabidopsis thaliana] (TAIR:AT3G22170.2); similar to FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3), transcription factor [Arabidopsis thaliana] (TAIR:AT3G22170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41786.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41954.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76480.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1 (InterPro:IPR004330) Range:  from: 8614063    to: 8618142    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g15093.1    Description:  catalytic LigB subunit of aromatic ring-opening dioxygenase family. Identical to 4,5-DOPA dioxygenase extradiol-like protein [Arabidopsis Thaliana] (GB:Q949R4;GB:O23363); similar to hypothetical protein [Vitis vinifera] (GB:CAN61349.1); contains InterPro domain Extradiol aromatic ring-opening dioxygenase, DODA type (InterPro:IPR014436); contains InterPro domain Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; (InterPro:IPR004183) Range:  from: 8618340    to: 8619643    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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