Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->ATHB51                     <--------HAHB4                     --------->YAB1             <---------AHL20(2)                     <--------ATHB1         <---------AHL20(2)                     <------------ATHB5    --------->AHL20(1)                     <---------ICU4        <---------AHL20(1)                    <---------ATHB12       --------->AHL20(2)            <---------ICU4                    --------->ICU4         <---------AHL20(2) <---------YAB1                    --------->AHL20(2)     <---------ARR11(3)<---------AHL20(2) --------->LBD16 -DAG2              <---------ATHB51       --------->ARR11(3)--------->AHL20(2) ------>ZmHOX2a(1) --DOF2       ----------->GT1   --------->AHL20(2)<-----------GT1  --------->At4g35610   ttttcaaaaaaaaaaacagtcaataattacacatattaatagaaatatatttatacaattgattttaatagctcaacatttcctgagagacttatatgtt  8598600                                               <---------TOE2(3)                                    <              ----------->GT1          <---------ARR11(3)                                           -             --------->DAG2   <---------ARR11(3)                                                 ----            ---------->DOF2   --------->ARR11(3)                                                -----        <---------AHL20(2)    --------->AHL20(1)----------->GT1                                 <----        --------->AHL20(2)  --------->AHL20(1) <---------TOE1(3)                               <-----       --------->AHL20(2)  --------->AHL20(2)--------->AHL20(2)                                ------       <---------------AGL15<---------AHL20(1)---------->DOF2                    --------->TOE2(3) --     --------->YAB1    --------->AHL20(2)    --------->YAB1                 <----------DOF2 ---------   --------->AHL20(2)  <---------AHL20(2) --------->WOX13(1)          <-----------GT1    --------->YAB1   aacatattaataaataaagttatatataaatatatattcaatatcaattaaagttaaatgctatatagcattaaacctctttaacttaaaatcataaatt  8598700     --------->ICU4     <---------YAB1   --------->YAB1   <---------ICU4   <--------HAHB4  --------->ICU4  <---------ATHB12  <---------YAB1 ---------ICU4 -------->YAB1 ----->YAB1 ---->AHL20(2)                                          <---------TOE2(3) -----AHL20(2)       <-----------GT1             <---------AHL20(1) ----AHL20(2)    --------->AHL20(1)              <---------AHL20(2)                              <--- --->AHL20(2)    <---------AHL20(1)             --------->YAB1                                   ---- ------->ICU4 --------->YAB1 <----------DOF2 --------->YAB1                               <-------TEIL >AHL20(2)    --------->AHL20(2)           ----------->GT1                          ----------->HVH21   aataatcattatcaaataatatttttctcttctttccagtcggactagtataatatttgagataattcaaaaaaaaaaaaaaacatttgacatccatgtt  8598800                                                                                                -----                                                                                           ----------             <---------WOX13(1)                                                         --------->TOE1(3)            <------------CBF                                                           --------->ZAT6           --------->ATHB12                               <---------ZAT6              -------->P-----          <---------YAB1         <---------ICU4         <---------ANAC58           <---------MYB52(2)          <-------TEIL       <---------AHL20(2)         <---------ANAC58    <---------At4g35610<----- ------AHL20(2)             --------->AHL20(2)          <---------ANAC46    --------->At4g35610------ ----->AHL20(2)--------->YAB1--------->AHL20(2)     <------------CBF     <----------DOF2--------->TOE2(3)   taaatgtatagtttcattgatatttttgaaattaataagtgtataaacttaagagattgagtgtaaatgccccgtctttgctgagactaaccctaaagat  8598900      --------->ARR14(2)      <---------ARR14(2) ---->GLK1(1)                                                                                      <- >DOF2--------->GLK1(2)      <---------WOX13(1)                                                  <--- ---->CCA1(2)             <---------YAB1                                                      <------ ----ARR11(3)         <---------ANAC58    <----------DOF2                ----------->GT1  <---------- --->ARR11(3)         <---------ANAC58 ------>ZmHOX2a(1)         <---------GLK1(2)  ------->TEIL-----   atcaagaggttctgagtttgatgagcttgtgatagacactccttctttgaagtatttcgaagttacagattataagggtgaatatgaaactgatggtgct  8599000                                 <---------ALFIN1                          --------->CCA1(2)                          <---------GLK1(1)                         --------->ARR11(1)                         --------->ARR11(3)                                                  <-------                         <---------ARR11(3)      <---------ARR11(3)                         --------- --------YAB1            <---------ARR14(2)      --------->ARR11(3)                 <-----------HVH21 ------At4g35610         --------->ARR14(2)      <---------ARR14(2)     --------->ARR11(3)<------ZmHOX2a(2) ---At4g35610         <---------TOE2(3)      <------NtERF2              <---------ARR11(3)--------->ZAT14 -RAV1(1)            ---------->DOF2      <------ZmHOX2a(1)            <---------CCA1(2)<---------At4g35610 ---->ICU4  ------>ZmHOX2a(1) --------->ANAC46   --------->ARR14(2)    --------->GLK1(1)--------->At4g35610   gatgatagctactccttcgattttaaagatatgcccaacttggaggaggcagatattagttcgacataccctgatatctacaagtttgtcagatcagtca  8599100    ---------->DOF2   <---------MYB52(1)   --------->WRKY18(1)                                                               --------->ANAC46  <-----------HVH21                                                                --------->ZAT6 --------->ANAC46   <---------YAB1                                                <---------ZAT18  <- ----HVH21     --------->YAB1                                       --------->WOX13(1)        <------ >WOX13(1)  <----------DOF2    <---------WRKY38(1)              --------->WOX13(1)--------->ZAT18  <-   catccgtcaagcggctttcattatgcataagagtcaatgccgaagaggtaacctgtttccatctatctatcaatctcattttagaacactaaaccaggtt  8599200                           --------->ZAT14                          --------->ALFIN1                      <---------ICU4        xxxxxxxxxxxxxxxx>smallRNA(i)       <-------TEIL<---------ICU4                                      <-----------ARR10    --------->At4g35610  <-------MYC3     ------>ZmHOX2a(1)            --------->GLK1(2)    <---------At4g35610  ------->MYC3     <---------YAB1       --------->ZAT2 --------ANAC58    --------->YAB1     --------->ARR11(3)       <---------ZAT2 ---GLK1(2)     --------->REM1(1)    <---------CCA1(2)       ------->GAMYB ---------->DOF2 --------ANAC58 --------->YAB1   <----------DOF2            --------->MYB46(3)          --------->AtLEC2   ttcttgagcttcattccttcatcatcatgtgcaggctttatatcctgatggtattgtcttcaaccagcttgagaatctaaagctatgtccatgcgattca  8599300                 <---------LBD16     ---------->DOF2    <---------WRKY38(1)    <---------WRKY12    <---------WRKY45   --------->WRKY18(1)   <<<<<<<<<<WRKY62    --------->At4g35610        <---------ZAT2   <<<<<<<<<<WRKY40  <--------P<---------GLK1(2)  --------->At4g35610   <<<<<<<<<<WRKY18 <---------MYB52(1)     <-----------GT1          <---------ATHB12  <-----------HVH21 <-------GAMYB     ------>ZmHOX2a(1)         <---------------AGL15              <-   aattggtcaaagctatttgtccggttgctcaaatattctcctaatttacgagagctcgaagtctccctcaatgaagtaagtttcttcgatatagacctat  8599400                                 --------->ANAC58                                 --------->ANAC58                             ------>ZmHOX2a(2)                            --------->ANAC46                                 <------ZmHOX2a(2)                            --------->ANAC58                           <---------ANAC58                            --------->ANAC58                           <---------ANAC58  <---------ANAC58                      --------->ICU4                       --------->AtLEC2 <---------ARR14(2)      -                    --------->YAB1  <----------DOF2<-----------RAV1(2) <---------ANAC46  <---------ANAC46    <<<<<<<<<<MYB80 --------->AHL20(2)        <---------WRKY18(1)    <---------ANAC46    <---------ANAC58 ---------DOF2     <---------AHL20(2)    <---------YAB1<-----------HVH21    --------->ARR14(2)   ----   tcttttggtttgatatactaaataatatttaagccaagcttttatgtttgacctcagggtcatacaaaatgttgtgtggatccacaagtttccttggaga  8599500  Previous    Next  AGI:  At4g15060.1    Description:  F-box protein-related. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55660.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 8599031    to: 8601757    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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