Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        ---------->DOF2                                                                                    <---------YAB1                                                                                  --------->YAB1                                                                                 <---------ATHB12                                                                                <xxxxxxxxxxxxxxxxxxxx                                             --------->At4g35610                ------>MYB46(1)             --------->ANAC58        <---------------AGL15                      ------>MYB83             --------->ANAC46        --------------->AGL15                     --------->WOX13(1)  --  <---------ZAT6                    <-----------------AGL3                    <xxxxxxxxxxxxxxxxxxxxxx -----ZAT6   --------->ANAC58       ----------------->AGL3              --------->REM1(1)       -----   ggtagtgctatgagcaagccaaaaaacatatatgagtaactaaaattagcagtcaaatatagagttggatagcttcaacaccaatcataaaagttttatc  8571400                                                                                                   --                                            <---------ANAC46                                    <----    <---------MYB52(1) <------------------------ANAC81                                          <----  ----------->GT1   <----------DOF2  --------->At4g35610                                        ----- xxxsmallRNA(se3)   <---------DAG2   <---------At4g35610           <---------ZAT18      --------->REM1(1) ---------->MYB.PH3(1)----------------------->TaNAC69(2) ----------->GT1              <-----------GT1 xsmallRNA(si3)  <-----------GT1  <---------At5g28300 <----------DOF2           --------->YAB1  ----- ---->YAB1---------->DOF2        <-----------GT1<---------YAB1     --------->ZAT18 <---------ICU4<---   aaaaccgttactaaaagttttacttttttttttttttacagctctctcgtataattcttttgtaaattttgcactatttcaaaaatacttacaactccag  8571500 --------->MYB46(3) ------->MYB52(1)                        ------>ZmHOX2a(2) -----ZAT2                               <-------TEIL  <---------AHL20(2)  <---------MYB52(1) -----At4g35610                         <------ZmHOX2a(2)   <---------AHL20(2) ---->At4g35610                        --------->ARR14(2)  --------->AHL20(2)             --------->DAG2 ---->ZAT2       <---------At5g28300   <---------ARR14(2)  <---------AHL20(2)--------->MYB52(2)     - ------MYB52(2) <-----------GT1<---------YAB1--------->MYB52(1)        <----------DOF2   ---------->DOF2   ctaacaacttaattctttttacagttttgtattatcaatgggatccataacagttgtataattttatatatgtctttgttagttcaaaaaaaaaagtttt  8571600           <----------DOF2      <-----------GT1   --------->YAB1             --------->TOE1(2)   <---------ICU4            --------->ANAC58                                        <------MYB83<---  --------->ICU4             --------->ANAC58                             --------->MYB52(1)     <---  <---------YAB1            ------->TEIL              --------------->AGL15          <------MYB46(1) -------->YAB1      <---------------AtSPL3  ---------->DOF2              <---------ATHB12        <---   tgtaataataactcttttgaagtttgtacgaacgtaagaaaaaaaaaaaaggaaaactagaattagtatgacccaataactgaagctaggtttaccaggc  8571700                                                     --------->MYB52(1)                                                    <---------ATHB12                                                ------------>CBF                                           ---------->DOF2                                        --------->TOE1(3)                 --------->LBD16 ------ANAC58           --------->AHL20(2)--------->MYB52(1)             --------->ANAC46         --- ------ANAC58           <---------AHL20(2)---------->DOF2               <---------LBD16         <---- ------ANAC46---------->DOF2            --------->TOE2(3)        <---------GLK1(2)           <-------   cgtgtgataagaatataaagcccaaattaaaaatgggtctaacctaaaggcccaataactgaaactaggttctctccgcatccattttctgcattactat  8571800                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                            --------->MYB52(1)                                                                            ------>MYB46(1)                                                                            ------>MYB83                                                                           --------->MYB55(1)                                                                          <---------------AGL15                                                                          --------->MYB46(3)                                                                          <---------MYB111(1)                                                                          <---------MYB59                                                                          <---------MYB55(2)                                                                          <---------MYB46(2)                      ------>NtERF2                                  <------ZmHOX2a(2)                     --------->ANAC58                               --------->ARR11(3)                     --------->ANAC46                               --------->ARR14(2)                  --------->ARR14(2)                                <---------ARR14(2)                  <---------ARR14(2)                      --------->O2    <---------MYB111(2)       <---------CCA1(2)     *TSS <-------TEIL            <---------O2------>ZmHOX2a(2)             <    --------->LBD16  --------->ANAC58                     <---------TGA1a --------->AtMYB61      ----   --------->RAP2.6(2)--------->LBD16                     --------->TGA1a--------->ANAC46        <--- ------->DOF2     --------->GLK1(2)                       =======================MYC_MYB        xxxxx -----YAB1 <---------YAB1  --------------------->WRI1 --------->CCA1(2) -------->P  ----------->RAV1(1) --YAB1--------->GLK1(1)<---------ALFIN1             <----------ID1 <---------ARR11(3)    --------->YAB1   taaagccgcatttctcatagaatccgccacttagggttcatagcagccagagagagagacaagtgagagggatctaccaaacgaagcaacaatggtgaag  8571900                                                                                       ------->GAMYB                                                                        ------>ZmHOX2a(1)                                                                        ============================HOX2a_HOX2a                                                                       --------->TOE2(2)            -                                                         <-----------TGA1              ==============                       ------>ZmHOX2a(2)       ---------->DOF2--------->YAB1         <---------At5g28300                       ==================HOX2a_HOX2a     <---------RAP2.6(3)      --------->DOF5.7(2)     --------->At4g35610                      <------NtERF2   <---------ICU4      --------->At5g28300     <---------At4g35610 ------>ZmHOX2a(1)   --------->LBD16 --------->ICU4   ------>NtERF2        --  ---------->DOF2    <---------ARR11(3)     --------->LBD16  <---------YAB1  ----------->HVH21    <-- ---------HSFB2a(2)----------->HVH21        --------->RAP2.6(2)     <---------ARR14(2)=============== ----->ARR11(3)  <---------ANAC58          <---------LBD16<------NtERF2--------->TOE1(2)     ------>ZmHOX2a(2) ------ARR11(3)  <---------ANAC58 <------ZmHOX2a(1)---------->DOF2  --------->ARR14(2)<------------AtMYB77 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------MYB52(1)--------->RAP2.6(2)  --------->DEAR3(1)   ---   ttcttgaagcagaacaaggccgtgatccttcttcaaggacgttacgccggaaagaaagccgtcatcatcaaatccttcgacgacggtaaccgtgatcgtc  8572000                    --------->LBD16                    <---------SPL7                   --------->DEAR3(1)                  --------->ATERF1(1)                  <---------LBD16                  <------NtERF2                 <---------ATERF1(1)                <---------DEAR3(1)                --------->ANAC58             --------->TGA1a                      --------->ANAC46             =======================================bZIP_DOF  --------->ZAT2             <---------O2                         --------->ANAC58             --------->bZIP60(2)                 <---------LBD16                             <------- -------->SPL7<-----------HVH21                 --------->At4g35610       <---------ZAT2     -------- ======================MYC_MYB           ---------->DOF2      --------->At4g35610       <---------ZAT6 ------->MYB52(1)------>NtERF2        --------->ANAC58        <---------ZAT2           <---------TOE1(3) -------SPL7 --------->O2             --------->ANAC58        <---------At4g35610--------->GLK1(1) ======================MYC_MYB   --------->MYB52(1)--------->LBD16        --------->At4g35610<------- --->ZmHOX2a(1) --------->DEAR3(1)   --------->LBD16 ---------->DOF2      <---------At4g35610<-------   cttacggacactgcctcgtcgccggactcaagaagtacccgagcaaagtcatccgcaaagactcagctaagaagacagctaagaaatctagggttaagtg  8572100                                                              --------->ANAC58                                                          ------>ZmHOX2a(2)                                                        <---------ARR14(2)                                                        <---------ARR11(3)                                                        --------->ARR14(2)                                                        --------->ARR11(3)                                                        <---------AGP1                                                       <---------CCA1(2)                                                   --------->TGA1a                                  ===========================MYC_MYB                           --------->At4g35610     --------->O2                          ----------->HVH21        <---------TGA1a                        <---------At4g35610        <---------bZIP60(2)                        --------->At4g35610        <---------ANAC46                       --------->GLK1(2)           <---------O2         ------>NtERF2 --ANAC55(1)          <---------GLK1(2)  xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ANAC58          <--- ->ANAC55(2)        --------->ANAC46 --------->ANAC46--------->ALFIN1  <---------ANAC58          ---- --ANAC46----------->GT1----------->RAV1(2)     ----------->HVH21   --------->ALFIN1           <----- --ANAC55(2)    <-----------GT1   -------->P  --------->ANAC46--------->ANAC58      <---------------AGL15   tttcatcaagcttgttaattaccagcatctgatgcctactcgttacacactcgacgtggatctcaaggaagtggcgactcttgatgctcttcagagtaag  8572200         --------->At4g35610         <---------At4g35610                                                              --------->GLK1(2)       <--------P    <------ZmHOX2a(1)                                                <-----------RAV1(2)     <---------HSFB2a(1)    <---------TOE1(3)                                      <---------ZAT2     --------->HSFC1(2)     <---------TOE2(3)                                      --------->ZAT2     <---------HSFC1(2) --------->At4g35610               <---------MYB52(1)      ------>MYB83     --------->HSFB2a(1)<---------At4g35610              ----------->GT1          ------>MYB46(1) ---ZmHOX2a(1)     <---------TOE2(3)             <-------TEIL              <----------DOF2--------->ARR14(2) ----->YAB1        <---------TOE1(3)          ----------->GT1         <---------HSFC1(2)  <---------ARR14(2) ----TOE2(3)<---------At4g35610           <------ZmHOX2a(1)           --------->HSFC1(2) <---------GLK1(2)   gataagaaggttgctgctcttaaggaagctaaggctaagcttgaggagaggttcaaaaccggtaagaacagatggttctttaccaagctcaggttctgaa  8572300  Previous    Next  AGI:  At4g15000.1    Description:  60S ribosomal protein L27 (RPL27C). Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to unknown [Populus trichocarpa] (GB:ABK92640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41990.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) Range:  from: 8571829    to: 8572485    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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