Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->ICU4                                         <---------ATHB12                      --------->DAG2          --------->ZAT14                <---------YAB1                 --------->DAG2              < -------->DOF2                  <---------HSFB2a(2)                    ---------->DOF2  --------->AtMYB61 ->ARR11(3)          <----------DOF2 ------>NtERF2                  <---------------AGL15---------->DOF2 --ARR11(3)  <-----------HVH21  --------->HSFB2a(2)        <----------DOF2    ---------->DOF2    <---   tgaaagccttacttcagtcacatctttagcaattctcgaggccatgattcaagcttcactgcttaaattcacaaaaagagaaaagtaagaccaaaggaat  8520100                                                                              --------->ANAC46                                                                            <-----------GT1                                                                       ----------->GT1                                                                   ------>MYB46(1)                                                                   ------>MYB83          >>>>>>>>>>MYB80                                         --------->WOX13(1)               --      ------>ZmHOX2a(1)                                          --------->AtMYB61             ------     --------->TOE2(3)                   --------->TOE2(3)       <---------ALFIN1<---------ALFIN1<--- --------->YAB1                  --------->YAB1                  --------->MYB46(3)       --------->ZAT6 ---------ATHB12               <---------ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)-------- ------AHL20(2)     --------->ANAC46    --------->YAB1       --------->At4g35610--------->ZAT14------   aaatcatcctcaaaccaaaaacacatcatacaaaatcatcaaacataaatctccagatgtatgagcaccaatccagttatacaacactcttaacaccaaa  8520200                                                                                --------->ANAC58                                                                        --------->At4g35610                                                                    <-----------HVH21                                                         <---------AHL20(2)     --------->ANAC46                                                         <---------YAB1 <---------At4g35610                                                        --------->AHL20(1)      --------->ANAC58                                                        --------->AHL20(2)   <---------KAN4(2)                                                        <---------AHL20(1) <------ZmHOX2a(1) ------->MYB52(1)                            <------ZmHOX2a(2)    --------->DEAR3(2) >MYB46(1)                                   =====================================HOX2a_HOX2a  ------ ------ATHB12                               <---------ARR14(2)  <---------ARR14(2)            ------- ->AtMYB61            --------->TOE1(3)<-----------GT1 --------->YAB1   <------NtERF2      --------->YAB1 >MYB83              --------->At4g35610    --------->ARR14(2)  --------->ARR14(2)  ----------->GT1   tcaacagatttaacagcgaaataagcttaagcccatacaattatccgatccaaacaaatataatcgaaaccggcagaggaataagcaagtgaatcaaaaa  8520300                                                      <---------ARR11(1)                                                      --------->ARR14(2)                       --------------->AGL15  --------->WRKY38(1)     <---------TOE2(1) --------->TOE2(3)      ----------->HVH21     <---------TOE1(1) <---------------AGL15  --------->WRKY12                                   <---  <----------ID1      ----------------->AGL2--------->TOE2(3)                                 -------  ----------->HVH21   ----------------->AGL1--------->TOE1(3)                            ----------->GT1 --->DAG2        <---------YAB1   ----------->GT1    <---------GLK1(2)        --------->GLK1(2)  ---- --->DOF2<------ZmHOX2a(1)      ---------->DOF2<---------WRKY18(1)     ----------->GT1<---------AtLEC2   gtatgggacgaggaagaagatgatacctgaatgagaaagtcaataaccttgacccgaatcgttttgaagaaaatggagaaaatcggttgtatggaataaa  8520400                                                                                  --------->At4g35610                                                                              <-----------HVH21                                                                             <---------MYB46(3)                                                --------->ANAC58             <------MYB83                                                --------->ANAC46             <------MYB46(1)                                       <---------TGA1a                      <---------AtMYB61                                       --------->TGA1a                      <---------MYB46(3)                                       <---------bZIP60(2)                 <--------P                                       =============================================MYC_MYB                            <---------ANAC58    --------->ANAC58          <-------GAMYB              --------->CCA1(2)    <-----------HVH21                     --------->MYB111(2)             --------->ARR11(3)   --------->WOX13(1)                     --------->MYB55(2)       --------->YAB1       <---------ANAC58  <---------ALFIN1           <---------MYB46(3)       --------->ATHB12  ========================bZIP_DOF                --------->MYB52(2)      --------->ICU4     <----------DOF2 --------->ANAC46               --------->ALFIN1      <---------ATHB12------>ZmHOX2a(2)===========================================MYC_MYB ------ARR11(3)     --------->ARR11(3) <---------O2                     <---------AtMYB61         --- -->AHL20(2) <---------ARR11(3)<-----------HVH21--------->ANAC55(1)  <---------DEAR3(1)  <-----------GT1 ----->ARR11(3)     <---------ARR11(3) --------->O2             *TSS<---------LBD16   <---------ICU4   atcttcgaatgatgagatatatgatctctttggtgtcagtcacatggcacacgctatcaatttagaaaaacgcggtggttggtcaccagaattactactt  8520500                                            --------------->AGL15                                            <---------------AGL15                                            --------->HSFB2a(2)                                           <-----------------AGL2                                           <-----------------AGL3                                           ==========================================================                                           ----------------->AG                                           ----------------->AGL1                                         <-----------GT1                    --------->LBD16   <---------ARR11(3)                --------->ARR14(2)    --------->ARR11(3)                <---------ARR14(2)    <---------ICU4               <---------CCA1(2)      --------->AHL20(1)      --------->KAN4(2)          <------MYB46(1)      --------->LBD16 --------->ARR14(2)          <------MYB83         ----------->GT1 <---------ARR14(2)       <----------DOF2   --------->ARR14(2)         --------->MYB59     <---------LBD16<---------HSFB2a(2)     <---------MYB52(1)    <---------ARR14(2) ------>HSFB2a(2)  --------->ANAC55(2)<---------AHL20(1)     <---------KAN4(1)    <---------MYB52(1)   ctcggtctgatttggtcatatccgtattaagtccggttaatattttccataactggggtttgaacattcggtttctttttttcagttagtccgatttgga  8520600                                                                                --------->AHL20(2)                                                                               --------->YAB1                           <---------AHL20(2)                              <---------AHL20(2)                          --------->AHL20(1)                  <---------MYB52(1)<---------AHL20(2)                          <---------AHL20(2)         <---------AHL20(1)    --------->AHL20(2)                          --------->AHL20(2)         <---------ARR11(3)    <---------YAB1                --------->YAB1                       --------->AHL20(1)   <---------AHL20(1)              --------->AHL20(2)                     --------->ARR11(3)   --------->AHL20(2)      <--              --------->AHL20(1)      <-----------------AG   --------->TOE2(3) <---------AHL20(2) <--             --------->YAB1--------->AHL20(2)--------->HSFB2a(2)          --------->AHL20(1)      ---        ----------->GT1   <---------AHL20(1) <---------HSFB2a(2)<---------ICU4 --------->AHL20(2) --- =======================================================MADS_MADS    <---------YAB1          <-------TEIL   gttttgagtatggaaaaataatactgaatttatttgttcaaactgttttggaaaaaatatttcccttaattacgaatataattaaaattttaaaattcat  8520700       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     --------->ARR14(2)     <---------AGP1     <---------ARR14(2)                                                                            --     <---------ARR11(3)                                                                            --     --------->ARR11(3)                                                                            <-     --------->AGP1                                                                    --------->MYB46(3)    <---------CCA1(2)            <---------TOE2(3)    <----------DOF2      <---------ALFIN1      ==== -------AHL20(2)                --------->YAB1      <------MYB83           --------->AtMYB61     ---- -------AHL20(1)               --------->ICU4       <---------DEAR3(2)    --------->MYB46(3)     ---- ------>AHL20(1)     <----------DOF2        <----------DOF2             <---------ALFIN1    --------- ------>AHL20(2)   ----------->GT1   ------->TEIL   <------MYB46(1)  --------->PCF2 --------->MYB46(3)   tttattagatcttggttaattcggtttaatgcattaatgaatttcggtttaagtcggttttcggtttttatgtcccaccactatctacaaccgatgatca  8520800          <---------ARR14(2)           ----------->HVH21 <---------CCA1(2)                   <---------O2 ------->TOE2(3)                     <---------TGA1a ------->TOE1(3)                     ===========================bZIP_DOF --------DAG2<-----------GT1         --------->O2 ==============================================MYC_MYB                                      ------>ZmHOX2a(1) ---->P --------->LBD16    *TSS      --------->TGA1a                                  --------->HSFB2a(1) --->TEIL --------->ARR14(2)         --------->ANAC55(2)        <---------CCA1(2)    <-----------ARR10 >YAB1<---------LBD16     --------->YAB1             <----------DOF2               ------>NtERF2  ---   accttatctccgtattcaccacaaacagtcatcactctcacttgacacaaaaactcttttgtctccgtctctctgtctctcatggcgactcttcctctcc  8520900                                                                                                    <                                                                                                    -                                                                                                    <                                                                        <---------ALFIN1          ---                                                                   --------->ANAC46               <--                                                                   --------->ANAC58              <---                                                                   --------->ANAC58             -----                                                                   <---------ANAC55(2)         ------                                                                   --------->ANAC55(2)        <------                                                                 --------->SPL7              --------                                                                 ---------->DOF2            ---------                                                                <---------MYB52(1)          ------->GAMYB                                                               --------->LBD16             <---------MYB55(2)                                                              <---------ANAC55(2)          --------->DEAR3(2)                                                              --------->ANAC46             --------->MYB46(3)                                  <---------CCA1(2)           --------->ANAC55(2)       ------->GAMYB                                <---------CCA1(2)          --------->ANAC46            <---------MYB52(2)                              --------->TOE2(3)            <---------ALFIN1            --------->MYB46(3)          --------->HSFB2a(2) --------->TOE1(3)          <---------ALFIN1        --------->MYB46(3) - --->NtERF2                   <---------DAG2         ------>ZmHOX2a(1)----------->RAV1(1)--------->MYB52(1)   cgactcaaacttctacaatctctctccctaaaccttatctctccaattccttctccttcccactccgtaacgcaacactctcaacaacaacaaaccgccg  8521000  Previous    Next  AGI:  At4g14880.1    Description:  OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1). Identical to Cysteine synthase (OASA1) [Arabidopsis Thaliana] (GB:P47998;GB:O23343;GB:Q42570;GB:Q94AS7); similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.1); similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.3); similar to Cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL4) (GB:O23733); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Pyridoxal phosphate-de Range:  from: 8517955    to: 8520464    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g14890.1    Description:  ferredoxin family protein. similar to ATFD3 (FERREDOXIN 3), electron carrier [Arabidopsis thaliana] (TAIR:AT2G27510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71173.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69765.1); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) Range:  from: 8520827    to: 8521451    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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