Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <---------AHL20(1)                                         <---------ARR11(3)                                         --------->AHL20(1)                                         --------->ARR11(3)                                        <---------AHL20(2)                           --------->ARR14(2)                           <---------ARR14(2) ---------DOF2      -------->ATHB1   --------->YAB1 -----ARR11(1)      --------->ATHB12--------->AHL20(2)                                            --- ---->ARR11(3)      <---------ICU4  <---------ATHB12                                        <-------- ----CCA1(2)       <---------YAB1   --------->ICU4   ------->MYC3                      ---------->DOF2 --HVH21         --------->YAB1------>ZmHOX2a(1)     <-------MYC3               --------->YAB1-------   tctttattttcatatacaaaaatcattggtatcctgcaataaatattttcatcaacgtggacttaacacatctaaaaacatatcatatcaaaagtcacaa  8506900                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                              <---------ANAC46                                                                           <---------CCA1(2)                                                                        <---------YAB1                                                                        ------>ZmHOX2a(1)                        --------->AHL20(2)                             --------->TOE2(3)       <---------AHL20(2)                                              --------->TOE1(3)      --------->AHL20(2)--------->YAB1                               <---------YAB1                <- ---->GAMYB          --------->YAB1                                 <-----------GT1               <-- ---GT1--------->AHL20(2)   <---------YAB1  <---------AHL20(2)   <---------GLK1(2)                --- -->MYB46(3)       <---------TOE2(3)      <---------AHL20(2)   <---------TOE2(3)                <----   ccctactatttattttggtctaagaataatatgattcaattcatattattttcaaaattcggtttgagattatccttatagcttgaaatcgatgaattat  8507000                                                                                           <---------TOE2(3)                                                                                 <---------------AtSPL3                                                                                 <---------------AtSPL8           --------->MYB52(2)                                                    --------------->AtSPL8         <---------MYB52(1)                                                 <---------ANAC58        --------->TOE2(3)                                      <---------------AtSPL3     <---------DOF5.7(2)   <---------ANAC58                                            <---------------AtSPL8   --------->DOF5.7(2)   <---------ANAC58                                            --------------->AtSPL8------->TEIL  <-------TEIL                                              <---------ARR11(3) --------->ATHB12 --------ANAC46                                             --------->ARR11(3)<---------YAB1 ---------RAV1(1)                       <---------YAB1--------->YAB1        <---------ANAC58 ------>ALFIN1              --------->ATHB12         <---------YAB1     <---------DAG2 --------->TOE1(3) -------RAV1(1)        --------->ARR11(3)         <---------YAB1        <----------DOF2--------->TOE2(3)   gtggtgcatgcgttaattgcaatagggtcttcattagagattattttttgttttgattataagataatgtactacttttcttgattgtacgttaatgtag  8507100                                                           <------------CBF                                                         --------->AHL20(2)                        --                                                         <---------AHL20(2)                        --                                                       --------->TOE2(3)                           --               ------->TEIL                          <---------AHL20(2)                            --          <---------ICU4                             <---------AHL20(1)                        ------          -------->HAHB4                             --------->AHL20(2)                       -------         <---------ATHB51                            --------->AHL20(1)                       <------         --------->ICU4                           --------->AHL20(2)                       --------->ANAC46       --------->YAB1                     --------->HSFB2a(2)                            <-----------GT1    ----------->GT1                       <---------HSFB2a(2)    ------------>CBF----------->RAV1(1)   ttccaagtgtaataatgcatttgctctagcacttctcaatttctctagaatataaaatattaattgtcccaattctatagagccaacatataaaccccac  8507200                  <---------ANAC58                  <---------ANAC58    --------->MYB46(3)                                                                             <-  ----------->RAV1(1)                                                             ----------------->AGL1 ------->AtLEC2   <---------ANAC55(2)                                             ----------------->AG ------->ANAC58   <---------ANAC55(1)                                  --------->ANAC58            -- ------->ANAC46   --------->ANAC55(2)      <---------AtMYB61           --------->ANAC58           --- ------->ANAC58   <---------ANAC46       <----------DOF2             ---------->DOF2              <-- >NtERF2     <---------ICU4     ------------>CBF                   --------->ANAC58             ----- -->ANAC46   <--------HAHB4    --------->MYB52(1)                  --------->ANAC46           ------- ---ALFIN1  <---------YAB1   <---------MYB52(2)           *TSS     --------->ANAC58 <---------------AGL15   catgcaacagatgtattattacgtgtatataactaacaattagctttggtattcaacattctcatattcacgaaagcattccattccaaattagagaatc  8507300                                                                                        <---------ANAC46                                                                                        <---------RAP2.6(2)                                                                                   --------->ALFIN1                                                                                   <-----------RAV1(1)                                                                                   <---------ZAT6                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                             --------->ALFIN1                                                                            <---------SPL7                                                                            --------->TOE1(2)                                                                           --------->O2 <---------ANAC58                                                                           <---------O2<---------LBD16                                                                           --------->TGA1a                                                                           <---------bZIP60(2)                                                                           <---------TGA1a                                                                           <---------ANAC55(2)                                                                           <---------ANAC55(1)                                                                           ==========================                                                                           <---------ANAC58 --------ICU4                                          --------->YAB1      <---------ANAC58 ------->ATHB51          <----------DOF2               <--------ATHB1      <---------ANAC46 ------>ICU4      --------->YAB1                      <---------ATHB51   <---------TGA2(2) -------YAB1      <--------HAHB4                      <---------ATHB12  ----------->HVH21   <-------- ---->YAB1        <---------ICU4<-----------HVH21     --------->ICU4    ----------->TGA1<---------RAP2.3(2) -->GLK1(2)      <---------ATHB12     --------->GLK1(1)<---------ICU4  <-----------HVH21<---------ANAC58   ataatttcaaaaacgttgaatcattttctttctcgttcagagctctagattagtcaataatggagattgaatcggtgacgtgcgagtgttgcggcttaat  8507400                   --------->TOE2(3)             --------->ZAT6            --------->ZAT14                               <-----------RAV1(1)          --------->ANAC46                              <----------DOF2        --------->ANAC46                               <---------ANAC58        --------->ANAC58                               <---------ANAC58        --------->ANAC58                       <------NtERF2                        <----------ID1       <---------ZAT18                        ------>NtERF2                       --------->ANAC58   --------------->AtSPL8                    --------->LBD16                   <------NtERF2   <-----   <---------------AtSPL8--------->ZAT14     <---------LBD16             --------->LBD16       ------ ==bZIP_DOF <---------ZAT14    ---------->DOF2--------->LBD16    <----------DOF2  --------->ANAC58 --DOF2--------->ZAT18   ---------->DOF2    <---------LBD16  <---------ZAT18   --------->At5g28300---   ggaagattgtacacaacactacattagtaaagtcaaagctaacttcgccgggaaatggctttgtgggctttgctccgaggcggtaagcgacgaattcagc  8507500                                                                                        <------NtERF2                                                                                      --------->ANAC58                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                                                     <------NtERF2                                                                                     --------->SPL7                                                                                     --------->ATERF1(1)                                                                                   --------->DEAR3(1)                                                                                   ----------->HVH21                                                                                   --------->At1g77200                                                                                  <------NtERF2                                                                                  --------->ATERF1(1)                                                                                  --------->RAP2.3(1)                                                                                 ------>NtERF2                                                                     --------->LBD16<---------ATERF1(1)                                                                     --------------------->WRI1                                                                    --------->ANAC46------>NtERF2                                                                    ----------->RAV1(1)------>NtERF2                                          <---------MYB52(1)       <---------LBD16--------->DEAR3(2)                     --------->At4g35610<---------ANAC58          ------->GAMYB  <---------ATERF1(1)                     <---------At4g35610<---------ANAC46    --------->TOE1(3)    <---------RAP2.3(1)                     <---------ZAT2     <---------ANAC58   --------->ZAT6--------->ARR14(2)          <---------DEAR3(1)           ---------->ID1     <---------TOE1(3)     --------->DEAR3(1) ----At4g35610    <------ZmHOX2a(1) <-------MYC3          <---------TOE2(3)     <---------DEAR3(1) --->At4g35610<---------MYB46(3)    ------->MYC3         <-----------GT1 <---------ARR14(2)       --- ------>LBD16--------->ALFIN1 <---------ZAT18<-----------RAV1(1)-------->P    <-----------HVH21   <--   cgtagttcgaagacggtggaggaagctgttaatgcacacatgtcgttttgtggcaagtttaacgctaaccccgcagaactcgtcgccgacggcatgagac  8507600                                                                ----------->RAV1(1)                                                               --------->ANAC46                  <---------MYB52(1)                         --------->ZAT6                 --------->LBD16                         ------>ZmHOX2a(2)               <---------LBD16                          --------->CCA1(2)               <-------TEIL                             <------ZmHOX2a(2)             <---------ARR14(2)                        <-----------ARR10             --------->ARR14(2)                        <---------AGP1             <---------SPL7        --------->ARR11(3)  <---------ARR14(2)          <------ZmHOX2a(1)        <---------ARR11(3)  --------->ARR14(2)  --------->TOE1(2)           --------->DEAR3(1)       <---------ARR11(3)                      <----- ------>At4g35610<---------At4g35610                   --------->AGP1                          <----- -------At4g35610--------->At4g35610                   --------->ARR11(3)            <----------DOF2   agatgctacgaaggaggtccggtgagttatcaccgaagatgtccaagaagttcggaagatctaacaccacataattcatgtagtcatctttttctcactt  8507700                                                                             <-----------GT1                                                                      --------->AHL20(2)                                ---------->DOF2                       <---------AHL20(2)    ---------->DOF2         --------->YAB1         <----------DOF2 <---------ICU4 --------->TOE2(3)         <---------YAB1    --------->AHL20(2)  <---------TOE2(3) --------->TOE1(3)     ----------->GT1       <---------AHL20(2)<---------AHL20(2) ----DAG2            ---------->DOF2        --------->AHL20(2) --------->AHL20(2) -----DOF2       <---------TOE2(3)   <-----------GT1          --------->AHL20(2) --------->ZAT14   ttgccttaaagttttggctaatgtaaagtataataaaagttacaaaattaatactttgagcaaaattaatatttatttgttactaaactcaccagtaatc  8507800  Previous    Next  AGI:  At4g14819.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71190.1); contains InterPro domain Protein of unknown function DUF1677, plant (InterPro:IPR012876) Range:  from: 8507258    to: 8507784    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g14820.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71188.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8507789    to: 8510033    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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