Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ===================HOX2a_HOX2a                                                            <------ZmHOX2a(1)                                                 <---------ANAC58                                                 <---------ANAC58                                                ===================HOX2a_HOX2a                                                =================================HOX2a_HOX2a                                                ------>ZmHOX2a(2)           --------->At4g35610                 ==================================HOX2a_HOX2a           <---------At4g35610                 ====================HOX2a_HOX2a          <---------ARR14(2)                   <------ZmHOX2a(2)                    --------->YAB1          --------->ARR14(2)                  --------->ARR14(2)             <---------ZAT14         <---------PCF2                       <---------ARR14(2)             --------->ZAT14    --------->ALFIN1                          --------->ARR11(3)          ------>ZmHOX2a(1) --------->DOF2                               <---------ARR11(3)      <---------ARR14(2)          <-- ----->ANAC46                                ==================================HOX2a_HOX2a        --- ----->ANAC58                                <------ZmHOX2a(1)        --------->ARR14(2)         ---- ----->ANAC58                           <----------DOF2 <---------ANAC46------>ZmHOX2a(2)        ----   cacaaagagggggacctgcaagtttgtccaacgatacaaactctttaggatccttgtggtgaggaagtctctgatcctcttcactatcatccatatacca  8431500                                                                      --------->ICU4                                                                  <------NtERF2          <---------AHL20(2)                                                                 --------->ANAC58       --------->AHL20(2)                           --------->ANAC58                      --------->ANAC58 <---------AHL20(2) -------ZAT2               --------->ANAC58               <---------ANAC58    <---------RVE1(1) ------>ZAT2             ------>ZmHOX2a(1)                <---------ANAC46    <---------CCA1(1) -->MYB83               --------->TOE2(3)                 <---------ANAC58   --------->ARR11(3) -->MYB46(1)   ---------->ARF1 ---------->DOF2        <---------GLK1(2)      <---------ARR11(3)   agcttgaatcacttcttctctcccatcctaagcaaaagcacatcaagatgggattagattccttgggaggcaatgttcagatattttatatttaatctga  8431600                                --------->TOE2(3)                               ----------->GT1                        <---------HSFC1(1)                  <---------ARR14(2)                        <---------HSFB2a(2)                 --------->ARR14(2)      --------->CCA1(2)                        --------->HSFB2a(2)        --------->AHL20(2)     --------->MYB52(1)---------   ttttagcttcaaaacttcagacaattcgagaaatcgtcaattgcataactaaattgaatacgaataggcattaaactgactgcgagatttgagcaaaaga  8431700         --------->ATHB12        --------->ICU4                                                                        <------      --------->YAB1                              --------->MYB46(3)  <---------AtLEC2      ---------     <---------YAB1                          --------->At4g35610  <---------ANAC58     --------->ICU4     --------->ICU4                     --------->WOX13(1)        <---------ANAC58  <------ZmHOX2a(1)  --------->ICU4                      <---------ATHB12       <-------TEIL           ================= ->DOF2 <---------YAB1          ------->TEIL <---------At4g35610<---------YAB1  --------->TOE1(2)   agtagttatgatgattcgaaaatcgtcgaaaatgaatcaaatcactcagataacaatcgacgattcatgcttgcatcgcaaaactaggaattatcgattg  8431800                                                       --------->MYB46(3)                                                       <---------MYB55(2)                                                      --------->ANAC46                                              -------->ZAP1                                             <xxxxxxxxxxxxxxxxsmallRNA(le3)                     <----------ID1         <---------WRKY18(1)                  ------------------------>ANAC81 <-----------HVH21           --------->At4g35610             ----------->HVH21        ===================HOX2a_HOX2a     --------->WRKY12  --------->MYB52(1)<------ZmHOX2a(1)    --------->TOE1(3) ---WOX13(1)  --------->At4g35610        --------->TOE2(3) >ATHB12<------ZmHOX2a(2)---------->DOF2 --------------------->WRI1                                 - ==============HOX2a_HOX2a  --------->YAB1 --------->WRKY38(1)     ------>ZmHOX2a(1)------>ZmHOX2a(1)   gcattaacagatcagaagcagaggagacaaagataaaaacataccttgaccgcttcacccatcgtgttcctcgtgatgtcttagtccttcttcgtcttca  8431900                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                        --------->GLK1(2)                                                       --------->RVE1(1)                                                   --------->AHL20(2)                                                --------->AHL20(2)   ------>MYB46(1)                             --------->AHL20(2)   ------>MYB83<---------GLK1(2)          <------ZmHOX2a(2)                                         -  --------->MYB52(1)                     --------->ARR11(3)   ----------->GT1                       < <---------ALFIN1                        <---------ARR11(3)   <---------MYB46(3)-------->P      <---- --------->AtMYB61                      *TSS   <---------AHL20(2)          <---------ZAT14      <---- -------->MYB46(3)    <----------DOF2---------->DOF2--------->YAB1  ---------->DOF2 <---------MYB52(1)   aaaccacccgattactcgattcttctttttaaaacagggaaaagatcaaataaataaaaatctttggttaaaaagactaaactacccttatttctcaact  8432000        <-----------RAV1(1)                  --------->AtLEC2   <---------ICU4                 <----- -------->HSFB2a(2)                     --------->ANAC58    --------->AHL20(2)       ---------->DOF2< ---------HSFB2a(2)                     --------->ANAC58    --------->AHL20(1)    --------->YAB1    < -----DAG2      <---------ARR14(2)    <---------ICU4        <---------AHL20(2)   <---------ATHB12   < ------DOF2    <---------CCA1(2)  <-------TEIL             --------->AHL20(2)  --------->WOX13(1)  --   ttatagaagaatgttgcaaatctcagacatatcacatacatcatgccatgaaaatagacaaattaattatctcatacatatcaatcacaaagaagttgtg  8432100                                                                              --------->ARR14(2)                                                                             --------->bZIP60(2)                                                                           <---------ALFIN1                                                                           ----------->RAV1(1)                                                                         <-----------HVH21                                                                        --------->ANAC58                                                                        --------->DEAR3(1)                                                                        --------->RAP2.6(2)                                                                        --------->ANAC46                                                                        ------->GAMYB                        <---------YAB1                                  =============================             --------->ATHB12              --------->YAB1               --------->ANAC58         <--- ----ZAT6 ---------->DOF2       <---------ARR11(3)  --------->ANAC58   --------->DEAR3(2)        <--- ---------ANAC46       --------->TOE2(3)  <---------YAB1    --------->ANAC55(2)   ------>ZmHOX2a(1)<- ---------ANAC58      --------->YAB1    --------->YAB1    --------->AHL20(2) <---------ALFIN1    ---- ---------ANAC58 <------MYB46(1)--------->ARR11(3)  --------->ANAC58   --------->MYB46(3)        ==== ------->MYB52(2)<------MYB83 --------->MYB59  <----------ID1        --------->ANAC46            ----   ttacttggacctcaaagattggtatcatcaataaggtctctctcattataagacaagcatttacataatacaaaccgccacatcctctctctctctctcg  8432200                                                                                       --------->At4g35610                                                                                       <---------At4g35610                                                                                       --------->ZAT2           ------>MYB46(1)                      --------->LBD16                     ------>ZmHOX2a(2)           ------>MYB83                        <---------ANAC55(2)           <---------ALFIN1 ======MYC_MYB                                 ----------->GT1              --------->LBD16 ------ANAC58                               -------->P                     --------->ANAC58 ------ANAC58                           --------->ANAC46                   --------->ANAC58     <---- --------CCA1(2)                        --------->ANAC58                  <---------LBD16    -------- ----->TGA1a         --------->ZAT14    --------->ANAC58                --------->ARR14(2)   <------- =========================================bZIP_DOF     <----------ID1   <---------ARR14(2)  <-------- ----->O2<---------MYB59       ---------->DOF2 --------->ANAC46       --------->ANAC46 <---------ZAT2   cgtctctctaacctactcaaaactacagaccaaaaaagatggacgcaacccgtaaaaaaaacaaaaccatacaagacccgcactgatccagctcaaatct  8432300                                           <----------DOF2                                          <---------ANAC58                                          <---------ANAC58                                      <---------ANAC58                                      <---------ANAC58    <---------TOE2(2)            --------->ATHB12 ------DOF2                      --------->YAB1                                                    -- ->ARR11(3)                     <-------TEIL               <---------AtLEC2                        -- --ARR11(1)                  --------->KAN4(1)     <----------DOF2          --------->YAB1        --- -CCA1(2)                   <---------KAN4(2)  <----------DOF2        ----------->GT1            <---   ttaacccatgtttcttccacaatgaacgagaacattcattgtttgctttctttctttttgtacatggctaacatgttataagaacatgaaattgttcttc  8432400  Previous    Next  AGI:  At4g14716.1    Description:  ATARD1; acireductone dioxygenase [iron(II)-requiring]/ metal ion binding. Identical to 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (ARD2) [Arabidopsis Thaliana] (GB:Q8GXE2;GB:O23327); similar to ATARD2, acireductone dioxygenase [iron(II)-requiring]/ metal ion binding [Arabidopsis thaliana] (TAIR:AT4G14710.1); similar to ATARD2, metal ion binding [Arabidopsis thaliana] (TAIR:AT4G14710.2); similar to ARD-like protein [Brassica juncea] (GB:AAR03591.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Acireductone dioxygenase, ARD (InterPro:IPR004313); contains InterPro domain Cupin, Rm Range:  from: 8430202    to: 8431940    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g14720.1    Description:  PPD2 (PEAPOD 2). Identical to Protein TIFY 4B (TIFY4B) [Arabidopsis Thaliana] (GB:Q8GY55;GB:O23328); similar to PPD1 (PEAPOD 1) [Arabidopsis thaliana] (TAIR:AT4G14713.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71225.1); contains InterPro domain Acireductone dioxygenase, ARD (InterPro:IPR004313); contains InterPro domain ZIM (InterPro:IPR010399) Range:  from: 8431968    to: 8435070    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version