Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------ICU4                                                                                      <---------YAB1                                                                                   <---------MYB46(3)                                       <---------ETT(2)                           <---------WOX13(1)                                       --------->ETT(2)                           <--------P                                 <---------DOF5.7(2)                             <-------GAMYB                               --------->DOF5.7(2)                              <------MYB83                               ----------->HVH21                                <---------MYB46(3)   ----------->GT1           <---------ANAC46                                   <------MYB46(1) ------->CCA1(2)         --------->GLK1(2)                  --------->O2       <---------AtMYB61 ---->LBD16             <---------GLK1(2)                   <---------O2       --------->MYB59-------   gagatgagtaatttctctgagtttgagattctcgtgaacggtcgatctaataaacgcttgagacgagacttaagcactggtttggttgatgattccactc  8390400                                       --------->At4g35610                                     --------->ATHB12                 --------->ANAC46                                     <---------ICU4                  --------->LBD16                                    <---------YAB1                  <---------LBD16                               ------>ZmHOX2a(2)               ===============HOX2a_HOX2a      <------NtERF2          <---------ARR11(3)                ------>ZmHOX2a(2)     --------->LBD16         --------->ARR11(3)               ================HOX2a_HOX2a     ------>NtERF2           --------->ARR14(2)               <------ZmHOX2a(2)    --------->ATERF1(2)      <---------ARR14(2)               --------->GLK1(1)    <---------ATERF1(2)      <---------AGP1                  <---------ARR11(3)   <---------ICU4    --------->DEAR3(1)  ----------->RAV1(2)                  --------->ARR11(3)  <---------AHL20(2)   <---------LBD16      --------->At4g35610          --------->AHL20(2)<------ZmHOX2a(1) -->ANAC46 <---------ATHB12 <---------CCA1(2)  ----------->GT1<---------GLK1(1)--------->YAB1    <---   tattcgccggcaaatcgttgttaatcggctggatcttcatcatcggaagtggcaaaaaaatgagatctctccaggaaacaaaaataatcgcaaaatcgaa  8390500                                                                                         <---------ANAC46                                                                                       --------->MYB52(1)                                                                                       ------------>AtMYB77                                               <---------ICU4        ----------->GT1  ----------->TGA1                --------->ANAC58         --------->YAB1            ---------->DOF2    ----------->HVH21                --------->ANAC58 --------->ATHB12              >>>>>>>>>TBF1  --------->AHL20(2)       <-----------GT1 --------->ZAT14  <------ZmHOX2a(2)   ------------------------>ANAC81 ------ARR11(3) --------->ANAC46<---------ATHB12          <----------ID1    --------->AHL20(2)  -----   atctactaaaaacctctcaagctactactctcaaatcagtggatcatcatcttcacaaaaacgaagaagaaaagaaaaaaaaatataagtgacggttttc  8390600                                                                                      --------->KAN4(1)                                                                                      <---------KAN4(1)                                                                                     ---------->TaMYB80                 --------->LBD16                                                     <---------KAN4(2)                --------->ANAC46                                                  --------->LBD16   <                <---------LBD16                                                 --------->At4g35610--     ------>NtERF2                                                              <---------LBD16    --    ----------->TGA1     ----------->TGA1                                      --------->MYB52(1) <--    ----------->HVH21  <---------ICU4               <---------YAB1            <---------WRKY38(1) ---  <---------At4g35610  --------->YAB1 --------->ETT(1)                      <-----------HVH21    <--- ---->TOE2(3)  <---------LBD16 <---------YAB1  ----------->GT1        <------ZmHOX2a(1)  <-------TEIL   ttaacgctgacgattttcacgggaaacatgacgacgattgtcggaaacagcgttattagaaacagtaatggaggaaatagtcaccggaatattcattttc  8390700           <---------TOE1(3)           <---------TOE2(3)      --------->ATHB12    <---------WOX13(1)                  <---------AHL20(2)   <-------GAMYB                       <---------AHL20(2)  <---------MYB46(3)                   <---------AHL20(1) ------NtERF2                    ----------->GT1 ------->LBD16            --------->ARR11(3) ---->NtERF2              --------->GLK1(2) -------LBD16             <---------ARR11(3)                                                 <-------GAMYB ------>LBD16         <------ZmHOX2a(1)--------->AHL20(2)                      <<<<<<<<<TBF1--------- ------LBD16        <---------TOE2(3) --------->ICU4                         <-----------------AGL2   ccggcgattgattaaggtttttgaggaaaatctaagagtaattttttttttgctattgatgagaatttcgatttttgtttcttcttctggtttggggtta  8390800                                                                                              -------                                                                                              <------                                                                                              -------                                                                                            <--------                                                                                        <-----------HVH21                                                                                        <-----------TGA1                                                                                       <---------TGA1a                                                                                       --------->bZIP60(1)                                                                                       --------->TGA1a                                                                                       --------->bZIP60(2)                                                                                       <---------bZIP60(1)                                                                                       --------->ANAC55(2)                                                                                       --------->O2 <                                                                                       --------->ANAC58                       <-------TEIL                             --------->ZAT2         <---------O2<-               <---------AHL20(2) --------->At4g35610   <---------TOE2(3)              <---------ANAC55(2)              --------->AHL20(2)  <---------At4g35610  ---------->DOF2                 --------->ANAC58         <--------P    --------->ZAT14                 ==========================================bZIP_DOF         <---------WOX13(1)  <---------YAB1          <---------YAB1               --------->bZIP60(1)       <------MYB83    --------->ZAT18  --------->At4g35610     --------->At4g35610    --------->ANAC46       <------MYB46(1) <---------ZAT14  <---------At4g35610     <---------At4g35610   <-----------STF1 -->GT1<---------MYB46(3)<---------ANAC46       ----------->GT1--------->GLK1(2)  <---------bZIP60(1)   aaacgagattggttgattttataggtgcagtgtgatagctgaagctgaagaggttattaaagaagaagctgactagacacgatgatgccacgtcatttat  8390900                                                                                <---------AHL20(2)                                                                                --------->AHL20(1)                                                                                <---------AHL20(1)                                                                               --------->AHL20(2)                                                                               --------->YAB1   ----------->HVH21                                                        --------->YAB1 --------->ANAC55(2)                                                       --------->ICU4 <---------ANAC58                                                      <-------GAMYB <---------ANAC58                            <---------AtMYB61        <---------MYB46(3) <---------ANAC46                          --------->ALFIN1         <---------ANAC58 <---------ANAC55(1)                       <---------ANAC46         <---------ANAC58 <---------ANAC55(2)                    <---------DEAR3(1)          <-------GAMYB<---------YAB1 -->YAB1                     ======================================================================== ---AHL20(2)                 ------>ZmHOX2a(1)<---------MYB46(3)   <---------MYB46(3)              <- -->AHL20(2)                 <---------------AGL15            <----------DOF2 <---------YAB1    <---- ---TBP          <---------At5g28300   --------->SPL7         <---------DAG2<---------ICU4    <------ -----------------------TaNAC69(2)   <---------SPL7        <-----------GT1 <---------YAB1 --------->GLK1(1) ----------GT1  <-----------GT1      ----------->HVH21   <-----------GT1<---------YAB1    <---------GLK1(1)   attacgtgatagagcaaattaccgtttaatcctcttagtgggacggtgtggtttgattttttcactttttggttgttattattatatttcagatttcttt  8391000                               <----------DOF2                               --------------->AGL15                              <-----------------AG                              <-----------------AGL1                          <---------HSFC1(2)                               <---------YAB1      =========================================MADS_MADS                ------->TEIL      <---------------AGL15   <-----------------AGL2               -------->HAHB4      ==========================================MADS_MADS          --------->YAB1      --------------->AGL15   <-----------------AGL3               <---------ICU4    <---------At5g28300   --------->HSFC1(2)                      --------->ICU4   <-----------GT1        <---------At4g35610    <-----------HVH21<---------ATHB51 =====================MADS_MADS<---------------AGL15            --------->YAB1 <-----------GT1 --------YAB1           <--------P   <---------TOE2(3)         <---------YAB1 <---------YAB1        < -----AHL20(2)       <---------TOE2(3)----------->GT1        ----------->GT1<---------ICU4    <------ ----DOF2      --------->ICU4 ----------------->AGL3         --------->YAB1--------->ICU4---------->ID1   tatttttactgctagtagtaattgtggtagcttctttttatggaaaaaaactgtcagtgaaaattgtaataatgaacattattacagttttgtcttcttt  8391100                                    --------->ARR11(3)                             ------>ZmHOX2a(2)                     <------NtERF2  <---------ARR11(1)                   --------->AHL20(2)                     --------->ALFIN1                                    <---------AHL20(2)                   <---------ANAC58 <---------ARR14(2)     <---------HSFB2a(1)                   <---------bZIP60(2)   <----------DOF2   <---------GLK1(1)              <-----------RAV1(1)   --------->ARR14(2)     --------->GLK1(1)            <---------ZAT14 <------ZmHOX2a(2)      <---------ICU4       <---------AHL20(2)        <---------ALFIN1   --------->ARR14(2)      --------->ATHB12  <---------AHL20(2)    --------->At4g35610    <---------ARR11(3)     --------->ICU4     --------->AHL20(2)    --------->ZAT2 <---------ANAC58 <---------ARR11(3)     <----------DOF2    <---------At4g35610    --------->ARR11(3)     <---------YAB1    --------->ICU4    <---------ZAT2 <---------O2    --------->GLK1(1)      <---------ARR14(2)  --------->ANAC46 <---------ANAC46<---------CCA1(2)      --------->ARR14(2)              <---------AHL20(2) ---------ALFIN1--------->ALFIN1   <---------GLK1(1)  <---------LBD16--------->ATHB51     <---------YAB1 ----DOF2   --------->ZAT14<---------ARR14(2)   --------->YAB1<---------LBD16<---------AHL20(2)<-----   ctccacagctccactactgtggcgtggaagatcgggcatatctctttcagtcatcatcgggattttcggaattatttatttattcttctgtttttattga  8391200                                                                                             <------ZmHOX2a(1)                                                                                      >>>>>>>>>>ABI5                                                                                      >>>>>>>>>>BZIP12                                                                                     <---------O2                                                                                     --------->O2                                                                                     --------->ANAC58                                                                                     <---------ANAC55(2)                       --------->ARR11(3)                                            --------->ANAC46                       <---------AHL20(1)                                            --------->ANAC58                       --------->AHL20(1)                                          <---------ALFIN1                      --------->AHL20(2)                    <---------YAB1      <---------PCF5               ----------->GT1                              --------->ICU4     --------->WRKY38(1)              ----------->GT1                   <------ZmHOX2a(1)              --------->ZAT18        <---------AHL20(2)                     --------->ANAC58                <---------ZAT18        --------->AHL20(2)                     --------->ANAC58               --------->ALFIN1      - <---------TOE2(3)--------->AHL20(2)          <---------TOE2(2)          --------->YAB1      ======== ----AHL20(2)<---------TOE2(3)                <---------TOE1(2)      <---------------AGL15<----------   attgatgtaattaaaaaggtttaaatatatagacacagctatttttcgcaggaaaattagtgatgtttgtgctaataagagtggaccacgtagcaggagg  8391300  Previous    Next  AGI:  At4g14620.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22970.1); similar to unknown [Populus trichocarpa] (GB:ABK95342.1); contains InterPro domain Protein of unknown function DUF506, plant (InterPro:IPR006502) Range:  from: 8389035    to: 8390828    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g14622.1    Description:  CPuORF60 (Conserved peptide upstream open reading frame 60) Range:  from: 8389035    to: 8390828    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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