Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------>ZmHOX2a(1)                                                       <---------HSFC1(2)                                                       --------->HSFB2a(1)                                                    --------->LBD16                                                  ------>ZmHOX2a(2)                                                  =================HOX2a_HOX2a                                                 <------ZmHOX2a(2)                                                 ==================HOX2a_HOX2a                                                --------->ARR14(2)                                                <---------ARR14(2)<----------DOF2                                               <------ZmHOX2a(1)  <---------DAG2                                               ==================================HOX2a_HOX2a                                           ---------->DOF2  =====================HOX2a_HOX2a                                         <---------YAB1--------->HSFC1(2)>>>>>>>>>>>>>>>>>LFY                                       <---------ICU4  <---------At4g35610                     <-----                                       --------->YAB1  <---------ZAT2 <---------YAB1        <--------   ----------->HVH21                 --------->GLK1(2) <---------HSFB2a(1)------>ZmHOX2a(2)<---------DAG2   tccatgggacatgttctcttcatcttgtcaaaaactcagaatcatgaaaggatccgaagctcctactgccttatgatccattgtctcaaaacaccttttg  8361800                                                ---------->DOF2                                             <---------ANAC46                                           <------MYB46(1)                                           <------MYB83                                           <---------ANAC46                     --------->TOE2(3)                                           <---------ANAC58                    --------->ANAC55(2)                                           <---------ANAC58                    ----------->GT1                                           ----------->GT1  --------->ANAC58   <---------ANAC55(2)                                          <---------AtMYB61--------->DAG2     <-------TEIL                                     --------->DAG2       ---------->DOF2   --------->ARR14(2)                           ----------->GT1--------->MYB111(2)       ----------->GT1 ----AtMYB61        --------------->AGL15 --------->MYB46(2)--------->ANAC58<---------ARR14(2) --DOF2             <----------DOF2 ---------->DOF2 ---------->DOF2 <---------ZAT6   gtcgaggcaaaaacaaattctactttgtttagataaaaaaaagtttggtgtaaagaaagaaaaagcaatagggttacaaatacgttatatagatgtaaac  8361900                                                             <---------RVE1(1)                                                             <---------CCA1(1)                                                            --------->ARR11(3)      ---------->DOF2    <---------MYB46(3)               --------->ANAC46       <---------AHL20(1)     <---------ATHB12    ----------->GT1          <---------YAB1                 <---------ARR11(3) --------->MYB46(3) <----------DOF2 ---------->DOF2<---------YAB1     ------->TEIL           --------->YAB1   tagctttggttaattctgtaaaagatgagttttgattatacgaagtttatatgtatgctcaagatatttgatactaacataaccaataaagtttagtatt  8362000                                   <---------AHL20(2)                                  --------->AHL20(2)                               --------->CCA1(2)                              <---------ARR11(3)                              --------->ARR11(3)                        --------->ZAT6                          ---------->DOF2          --------->CCA1(2) --------->GLK1(1)      <--------      --------->YAB1    <---------ZAT6          <---------TOE2(3)    <---------GLK1(1)      <--------   tgatactaacataagtttgggacatagtgaaagatataaaattttggattaagaaatgggcaatgtaatggatatcactatcgaaagttttcaacttttt  8362100                                   <-----------GT1                          <---------ARR14(2)                          <---------ARR11(3)                          --------->ARR11(3)           <---------ALFIN1                          --------->GLK1(2)     <---------ANAC58                          --------->ARR14(2)    <---------ANAC58                         <---------GLK1(2)   <---------ATHB12                   *TSS          -------                     <---------ANAC46    --------->MYB46(3)              <---------ANAC58     <------ -DAG2               <---------ANAC58    ------------>CBF------------>CBF<---------ANAC58 <---------- --DOF2              <---------ANAC58   --------->ANAC46<-----------------AG  <---------At4g35610   -   tttgttttgtttaatattagatggcgagaatctttagtcactacccaataacttgctccaccaatttgggatttgacttgagctcttctcatcgtcatct  8362200                                                               <<<<<<<<<TBF1                                                        --------->ARR11(3)   <------NtERF2<------ZmHOX2a(2)                       <---------ARR11(3)  ------>NtERF2 ========================HOX2a_HOX2a    <---------At4g35610 --------->DEAR3(1)  <----------DOF2                 --------->SPL7 -->At4g35610  --------->AGP1                       <---------MYB52(1)                              < ---At4g35610  <---------ARR14(2)                  --------->LBD16                            ------- -TGA1  <----------DOF2 --------->YAB1           <---------LBD16                         --------->WOX13(1) --------->ID1 --------->ARR14(2)------>ZmHOX2a(1)--------->ANAC46<<<<<<<<<TBF1       <-----------GT1   tcgtcgccttcttttccgatctactttcatcactccttcactcactcagtctccgtaagctcttcttcttcttctctcagtctctgtttttcaatccgaa  8362300                                                              ----------->GT1                                                  <----------DOF2                                   <---------ICU4 ===================================================                                   -------->ATHB1<---------ANAC58                                   --------->ATHB12 ----------->HVH21       <----------DOF2            <---------YAB1 <---------ANAC46 <---------ICU4        --------->ANAC58          <---------ANAC58     ----------->HVH21            -- -------TEIL           --------->ANAC58--------->YAB1         <---------ANAC46                     <- -->LBD16      <---------ZAT6    --------->GLK1(2)--------------->AGL15               --------->LBD16   aattcattactttgatggtgttaccacgaattgagaatcattgatggtattgctttgatgggtatcgtttatatgacagtttttaatccgaaagtttatt  8362400                                                           --------->ARR11(3)                                                           <---------ARR11(3)      <------MYB46(1)                            <---------ARR14(2)      <------MYB83                               --------->ARR14(2)      <XXXXXXXXXXXXXXXXXXXXMIR837-3P             <---------ARR11(1)                             <----    <---------WOX13(1)                           --------->ARR11(3)        <---------ZAT6    <-------  --------->ATHB12               ------->TEIL   <---------CCA1(2)   <------MYB83          ------->TEIL <---------YAB1              <---------TOE2(3)--------->YAB1      <---------WOX13(1)      --------->GLK1(2) ==============MADS_MADS    <-----------GT1  <---------ATHB12   --------->ATHB12<---------TOE2(3)<--- ------------->AGL15     <----------DOF2   --------->WOX13(1)  <---------YAB1   <---------YAB1  <---- ---------DOF2   <---------MYB46(3)   <XXXXXXXXXXXXXXXXXXXXMIR864-5P<------MYB46(1)    <---------YAB1   actttgattggttttttgtttgttctgttttaacgaatttgaagccaatcatatctactaagaacttgattggtttagagttatggatgatgaatctgat  8362500                   <---------YAB1                  --------->TOE2(3)                 <--------HAHB4                                                                  <---                 --------->ATHB12                                        ---------->ID1  <---------HSFC1(1)                 <---------ICU4                                     --------->ARR14(2)   --------->HSFC1(1)                 -------->ATHB1                                     --------->ARR11(3)   --------->HSFB2a(2) -----YAB1       --------->YAB1                                     <---------ARR14(2)   <---------HSFB2a(2) --YAB1         --------->ICU4       --------->ANAC55(2)            <---------ARR11(3)  <---------LBD16 ------AHL20(2) <---------ATHB12  --------->ARR11(3)        <---------ARR14(2)         ----------->RAV1(2) -----WOX13(1)--------->WOX13(1)  <---------ARR11(3)        --------->ARR14(2)    <---------GLK1(2)   taatggaattgttttgcaatcattagtgatttatgagatacttgtttcagttacaagaattggattcgaagatttgtagctatggattcttctggaactg  8362600                             <---------MYB59                             --------->MYB46(3)                            --------->ANAC58                    <---------MYB46(3)                    <------MYB46(1)      <------ZmHOX2a(1)                            --------->KAN4(2)                  <--------P--------->ANAC58                                          <XXXXXXXXXXXXXX              <---------ANAC46     --------->ZAT14                                  <---------YAB1              <---------ANAC58     <---------ZAT14           ---------->DOF2       --------->AHL20(2)              <---------AtLEC2 ------>MYB46(1)              <---------WRKY38(1)    --------->YAB1     ---------->DOF2<------MYB83 --------->MYB46(3)   <---------ALFIN1          --------->TOE2(3) ------GLK1(2)<---------ANAC58 ------>MYB83         ----------->RAV1(1)       <-------TEIL        ---   attcggctaaagaattgcatgttggtttggacccaactacagaggaagagtatgccacacagtcaaagttacttcaagagttcattaatattcccagcat  8362700  Previous    Next  AGI:  At4g14560.1    Description:  IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); transcription factor. Identical to Auxin-responsive protein IAA1 (IAA1) [Arabidopsis Thaliana] (GB:P49677;GB:O23312); similar to IAA2 (indoleacetic acid-induced protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G23030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71286.1); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311); contains InterPro domain Aux/IAA-ARF-dimerisation; (InterPro:IPR011525) Range:  from: 8361054    to: 8361982    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g14570.1    Description:  acylaminoacyl-peptidase-related. similar to serine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G36210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71279.1); similar to hypothetical protein OsI_032440 [Oryza sativa (indica cultivar-group)] (GB:EAY78481.1); similar to prolyl oligopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47613.1); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375) Range:  from: 8362180    to: 8366649    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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