Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <-----------GT1      --------->ANAC46  --------->ANAC46 --------->YAB1      ------>ZmHOX2a(1)                    ------>ZmHOX2a(1)       - >ZmHOX2a(2)    --------->YAB1        --------->TOE1(2)        ------>ZmHOX2a(1)                  --- ->ARR14(2)   <---------YAB1       <---------ARR14(2)      --------->ARR14(2)              <---------GLK1(2) --ARR14(2)   --------->ICU4       --------->ARR14(2)      <---------ARR14(2)      --------->YAB1 <--   gactactcaactagtcaatattgataaccattttgtgaatcctacaagtccctgaagtacaaatccttcttaattctcctaaaaatcagaacagaattgc  8243500                <---------ANAC55(2)                --------->ANAC55(2)               <-------TEIL                                                            --------->ARR14(2)              --------->CCA1(2)                                                        <---------ARR14(2)             <---------ARR14(2)                                                        ------->TEIL             <---------ARR11(3)                                                       <---------GLK1(2)             --------->ARR14(2)                                  <---------ZAT14  --------->At4g35610        <---------ATHB12                                         --------->ZAT14<---------ZAT14 ---------->RAV1(1)        <---------ARR11(3)         --------->At4g35610       --------->ZAT14 ------>At4g35610          <<<<<<<<<<GT-1    <--------P          <---------REM1(2)<---------At4g35610 -------At4g35610    --------->ZAT6  ------->TEIL     <---------At4g35610       --------->ZAT18   <--   agcaacacaaatgaagatacataacactatatcattttgaatctctggtagattggagctaaaactcttcacagagacgaagtgaactgaatcttcgaat  8243600                                                   -------->HAHB4                                                   <--------ATHB1                               <---------ICU4      <---------ICU4                        --------->GLK1(2)          --------->YAB1                       <---------ARR14(2)         <---------ATHB51                       --------->ARR14(2)         --------->ICU4                  --------->MYB52(1)<---------YAB1<---------ATHB12                                 --     --------->ANAC46  <---------GLK1(2)--------->YAB1                     --------->YAB1  ---------- ---------GT1----------->RAV1(1)  --------->YAB1--------->YAB1      <-------TEIL   <-----------GT1>>>   ttacaacacagaatgcaacataacagattctaaaaatcacaattagactctaataattctcgatttaagatgcaaaatcagaaataaacaacttaaagaa  8243700                              --------->YAB1                       --------->YAB1                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                 <---------AGP1                 --------->ARR11(3)                 <---------ARR14(2)                 --------->AGP1                 <---------ARR11(3)                 --------->ARR14(2)             <---------At4g35610                                  --------->At4g35610             --------->At4g35610                    --------->TOE1(2) --------->GT1  <---------CCA1(2)                   --------->TOE2(2)         ---------->DOF2 >DOF2   --------->ANAC46     <---------ICU4       --------->MYB46(3)     ---------->DOF2 >>>>>>TBF1--------->ANAC46  <---------ATHB12 --------->YAB1      <---------At4g35610       <--------   gaagaaaaatcacacagcagatctataatcaataatctcgttcttcaatagtaaccaaggagaaatttagcagaaataaagaaagagaagagagtcacca  8243800                         --------->ATERF1(1)                         <------NtERF2                        <---------RAP2.6(3)                        ------>NtERF2                       --------->bZIP60(1)                       <---------ANAC46                       <---------bZIP60(1)                       --------->DEAR3(1)                       <---------ANAC58                       <---------ANAC58                      --------->DEAR3(2)        <----------DOF2                   <-------MYC2                --------->TOE1(3)                   <-------MYC3                --------->TOE2(3)                   ------->PIF5         ------>NtERF2                   <-------PIF5         --------->LBD16                   ------->MYC2        --------->RAP2.3(2)    ---------->DOF2            ---------->DOF2            --------->RAP2.6(2)  --------->TOE2(3)    <----------DOF2------->MYC3   <---------At4g35610 --------->YAB1          <---------YAB1        - ---GT1 <---------DEAR3(1)       <---------ALFIN1  --------->YAB1  --------->MYB52(1)          *TSS -   ttttcgctcttcggtgaagctcgtgccgtcgtcttccactgccgcaaaacctttaataaaaacctaaagtaacagagcttataagagagacatttgagaa  8243900               <------------CBF              --------->ATHB12              <------------ATHB5                            <-----------HVH21                 -------       <----------ID1                                     --------->DAG2                    ---------     --------->ZAT6                  --------->DAG2      ---------->DOF2         <----------DOF2    - -------->TOE1(3)                   ---------->DOF2   --------->YAB1             <---------DAG2 ----- -------->TOE2(3)          ----------->TBP      --------->TOE2(3)   <---------ALFIN1    ---------->DOF2   aaccctaatactacaaacattgggcctctataaacacaaaaagcccattaacttaatcaaaaagtcaggcccatctcacttcccttttttaaaagaaagt  8244000                                              <-------PIF5 <---------AHL20(1)                           ------->PIF5 <---------ARR11(3)                           --------->LBD16 <---------AHL20(2)                  --------->ATHB12 --------->AHL20(2)               --------->YAB1 --------->AHL20(1)               <---------ICU4                                --------->MYB52(1) --------->ARR11(3)              --------->ICU4 <---------ETT(2)           ----------->RAV1(1)    <-- ---->GT1                  ----------->GT1 <---------ANAC46              <-------TEIL         ------- ->DOF2              --------->YAB1 <---------YAB1                      --------->CCA1(2)   --------- -------->AHL20(2)  --------->AHL20(2) --------->At4g35610       --------->REM1(2)      <---------YAB1 ---->AHL20(2)--------->LBD16  --------->YAB1<---------ANAC46   <---------MYB52(1)   <---------MYB52(1)   aaatatattctagttgccgaaaataaaaattgttaataatcagtggcccgtggacaaaaactagccgtttagagatacaacacaacggttatgtttgttt  8244100                                                                                          *TSS                                               <----------DOF2                     ------------>CBF                                               <---------DAG2                     --------->TOE2(3) --------DOF2                                 <---------DAG2                    ------->TEIL       <- --->ID1                             --------->TOE2(3)                 ------->GAMYB     ------------ >MYB52(2)                           --------->TOE1(3)    <-----------GT1      <---------GLK1(2)<----   ctttgtttcaaacttcaaacctcgtgaatcactcacaaaccctaatcccctttttcattttctctctctctaacgctctctgaatctcaatttcaatttc  8244200                               ------>NtERF2                           --------->DREB2C(2)                           <---------ETT(1)                           ----------->HVH21                           --------->DEAR4(1)        --------->HSFC1(2)<------NtERF2        <---------HSFC1(2)--------->DEAR3(2)        <---------HSFB2a(1)--------->At1g77200      <---------ATHB12         --------->GLK1(1) --------DAG2            ------>NtERF2         <------ZmHOX2a(2)         --------->YAB1 >CBF   --------->HSFB2a(1)--------->DEAR3(1) --------->ARR11(3)   --------->TOE1(3) -------GT1            <---------ABI4(2)      <---------ARR11(3)   --------->TOE2(3)         --------   actctttcgaaacttcttcaacaatggcaccgacaccatcttcttcaagatcaaatcaaactcaatacaccttaatcagaactccacaaacaaaacaacg  8244300                                           <-------TEIL                                          <------ZmHOX2a(2)                                         <---------ARR11(3)                                         --------->AGP1                                          <---                                         --------->ARR11(3)                                   -------                                         <---------ARR14(2)                                  --------                                         --------->ARR14(2)                           --------->LBD16                                     ---------->DOF2                                ------>ZmHOX2a(2)                                   ------>ZmHOX2a(2)                              <---------ARR14(2)                                  <------ZmHOX2a(2)                               --------->ARR14(2)                                 <-----------ARR10                              <---------ATERF1(1)<-                                 ------->TEIL                 --------------->AGL15<------ZmHOX2a(2)                                 --------->ARR14(2)           =======================================         --------->ANAC58        <---------AGP1          --------->HSFC1(2)     <------NtERF2--------         --------->ANAC58        <---------ARR14(2)   --------->LBD16           --------->LBD16 -----         --------->ANAC46   --------->MYB52(1)      <---------LBD16            --------->RAP2.6(2) -- ->MYB52(1)               <-----------RAV1(2)     <---------ALFIN1            <---------LBD16<-------   tctcaatttccactcaaaaaccccaaacccagacggatctaaagatccatctccaccggagcatccagttgaagtaatcggccggatccgagattaccct  8244400  Previous    Next  AGI:  At4g14320.1    Description:  60S ribosomal protein L36a/L44 (RPL36aB). Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to unknown [Populus trichocarpa] (GB:ABK94266.1); contains InterPro domain Ribosomal protein L44e; (InterPro:IPR000552); contains InterPro domain Ribosomal protein, zinc-binding; (InterPro:IPR011332) Range:  from: 8242501    to: 8243895    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g14330.1    Description:  phragmoplast-associated kinesin-related protein 2 (PAKRP2). similar to ATK1 (ARABIDOPSIS THALIANA KINESIN 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G21270.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71434.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) Range:  from: 8244190    to: 8247440    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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