Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ----------->RAV1(2)                                --------->At4g35610                                <---------At4g35610                                --------->ZAT2                    ----------->GT1                                                    --------->ATHB12                    --------->LBD16                                                   <---------AHL20(2)                   ------->GAMYB<---------ZAT2                --------->GLK1(1)       <---------YAB1                  <---------LBD16                      --------->WOX13(1)          --------->GLK1(2) ------At4g35610 -------->P   <-----------RAV1(2)--------->YAB1               ---------->DOF2 ----->At4g35610 --------->MYB52(1)           --------->WOX13(1)           --------->YAB1<---------WOX13(1) --->DOF2      --------->MYB46(3)           <---------YAB1--------->YAB1  <---------ATHB12    -------   gctgatgctgtttctgaacaaccggaaaaatcgcagctgaaacaacatcattcaaaacaatcagaaatcaaattcaatgataaagaatttgattgagaaa  8207000                     <---------ANAC46                     <---------ANAC58        --------->ZAT6                  --------->DEAR3(1)   <---------------AtSPL8                 <---------LBD16       --------------->AtSPL8            --------->YAB1             --------------->AtSPL3            <---------ICU4             <---------------AtSPL3     --------->YAB1  <---------ANAC58  <------ZmHOX2a(1)   --------->GLK1(2) --->DOF2--------->YAB1         <---------YAB1            <---------GLK1(2)                    ------   gaaggaatcaaaaatcatcaccggcttgtttcttctcattaggagtaccactacgttgaagaatctcaagctcgacaagaccaagagacataagtcccaa  8207100                                                --------->LBD16                                                ------>NtERF2                                            --------->GLK1(2)                                         --------->ARR14(3)                                         <---------ARR14(3)                             <---------TOE1(1) <---------RAP2.6(2)            --------->ANAC58                   <---------------------WRI1  <---------LBD16              --------->MYB52(1)                   <------NtERF2         <---------ARR11(3)             <------ZmHOX2a(2)    ------>ZmHOX2a(1)                  --------->LBD16        --------->ARR14(2)    --------->ANAC58  <---------ARR14(2)                  ------>NtERF2          --------->ARR11(3)    --------->ANAC46  <---------GLK1(2)<--                 <---------LBD16         <---------ARR14(2) ------>ZmHOX2a(2) --------->ANAC58   <---                 --------->LBD16 ==================================HOX2a_HOX2a--------->ANAC46  <----         --------->YAB1      <---------TOE2(1)<---------LBD16  --------->ANAC58  --------->ARR14(2) ---->DOF2      <---------LBD16  <------ZmHOX2a(1)<---------ANAC46      ============================HOX2a_HOX2a   agtaagaccagacataatcccggcgaagagtacgaggaaacaagatattccggcgtaagtgatccactcaaacgatccaaacggaatcgcttctcctccg  8207200                                               --------->DEAR3(1)                                              <------NtERF2                                            --------->DEAR3(1)                                            --------->AtMYB61                                            <---------ALFIN1                                           <------NtERF2                                           --------->MYB46(3)                                           <---------ABI4(2)                                           --------->ERF1                                           --------->ATERF1(1)                                          <-----------HVH21                                          --------->ABI4(1)                                          <---------ATERF1(1)                                          ------>NtERF2                                         --------->RAP2.3(2)                                         --------->RAP2.3(3)                                         --------->ANAC58                                         --------->ANAC46                                         --------->RRTF1(2)                                         --------->DREB2C(2)                                         --------->DEAR3(1)                                         <---------ATERF1(2)                                         --------->ATERF1(2)                                         --------->RAP2.6(2)                                         --------->RRTF1(3)                                        --------->ERF1                                        --------->RAP2.3(1)                                        --------->DEAR4(2)                                        --------->RRTF1(1)                                        <------NtERF2                                        --------->ATERF1(1)                                        --------->RAP2.6(1)                                        --------->ORA47(2)                                       --------->At4g35610                                       <---------At4g35610                                       <---------DEAR4(2)                                       <---------DREB2C(1)                                       --------->ABI4(1)                                       <---------RAP2.3(1)                                       <---------ATERF1(1)                                       ------>NtERF2                                      --------->RAP2.3(2)                                      <---------ATERF1(2)                                      --------->ATERF1(2)                                      <---------DEAR3(1)                                   <---------DEAR3(1)                                   --------->ANAC46                                  ------>ZmHOX2a(1)                              <---------ARR14(2)                              --------->ARR11(3)                              --------->ARR14(2)     --------->YAB1                       --------->LBD16--------->DEAR3(1)                      <---------HSFB2a(2)--------->ANAC58                      <---------ANAC46--------->RAP2.3(3)                   <---------ARR14(2) --------->ANAC46              <-----------GT1      <---------MYB52(1)    ----------->ARR10<---------ATERF1(1) --------->ARR14(2)     <-------GAMYB --------->ARR14(2)--------->ERF1  --------->WOX13(1)  <---------At5g28300<---------LBD16 --------->RAP2.3(1)         <---------ARR14(2)                 - <-----------GT1   --------->GLK1(2)<---------ATERF1(1)       XXXXXXXXXXXXXXXXXXXX>MIR774B* --------- -------ICU4   <-----------------AGL1--------->DEAR4(2)      <-------TEIL                  <---------YAB1 ------MYB52(1)----------------->AGL1--------->ATERF1(1)  <---------At4g35610          <---------DAG2 ---GAMYB <---------GLK1(2)--------->AHL20(2)------>NtERF2--------->At4g35610          <----------DOF2   ttattaccgttagattgtccgattccggataaaatcctcgccgccgccaccgcattaatcagatgcatattttcttcttgaaaacagagctttatgattc  8207300                                                                                                    <                                                                                                -----                                                                                         ------>ZmHOX2a(2)                                                                                        <---------GLK1(1)                                                                                       <---------AGP1                                                                                       --------->ARR11(3)                                                                                       <-----------ARR10                                                                                       <---------ARR11(3)                                                                  --------->YAB1      <---------CCA1(2)                                                 --------->AHL20(2)      <---------AHL20(2)     -----                                            <----------DOF2      <---------YAB1     <---------TOE1(2)     ------->TEIL                   --------->ANAC46         <----------DOF2       <---------MYB52(1)  <---------YAB1                    --------->ANAC58         <---------DAG2 <---------YAB1      ----- -------->YAB1                <-----------HVH21  <---------AHL20(2)     <---------AHL20(2)     ------ >ATHB12            <---------YAB1  --------->ANAC58   <-----------GT1  --------->AHL20(2)   --------   gatgatgaatctctctgtgtttgtgattctctggtcacacgaccttcttttttaattttgcctctttttgataattttataattcgttggatctcaccaa  8207400     <---------ARR14(2)     --------->ARR14(2)   *TSS                              ----------->GT1  --------->ETT(1)        <---------HSFB2a(2)                --------->AHL20(1)               -------  <---------ANAC46        <---------LBD16  --------->DAG2    <---------AHL20(1)         <---------YAB1 -----------HVH21         --------->HSFB2a(2)                --------->AHL20(2)       <---------ICU4 ->MYB46(1)  --------------->AtSPL8 <----------ID1           <---------AHL20(2)       --------->YAB1 --->P       --------------->AtSPL3--------->RAP2.6(3)      --------->AHL20(2)       --------->ICU4 ->MYB83    --------->ZAT14  <------ZmHOX2a(1)         <------ZmHOX2a(1)           <---------ICU4 ----->RAV1(1)   ------------>CBF --------->MYB52(1)  ----------->GT1     ---------->DOF2--------->YAB1 ->MYB46(3) <---------ZAT14--------->LBD16---------->DOF2   <---------AHL20(2)     --------->YAB1   catgtcggattcagttcagtacaattttccaggacaaaacggcaaaaagttttgtaaggaaattaaatttagaccctaaagttattcattatgataaaaa  8207500                                                                       <---------ZAT14                                                                     <---------ARR14(2)                                                                  <---------ANAC58                                                         <---------YAB1--------->ETT(2)                                                        --------->AHL20(2)                                                     --------->TOE2(3) --------->ZAT18                            --------->ARR11(3)      ----------->GT1  --------->ARR14(2)                           <---------At4g35610----------->RAV1(1) <---------ANAC46                     <---------ANAC58         --------->TOE2(3)   <---------ANAC55(1)            <---                     <---------ANAC46        --------->MYB46(3)   <---------ANAC58      ------>ZmHOX2a(2)   <----------DOF2   <---------ANAC58 <----------DOF2----------->GT1 --------->REM1(2)<---------ARR11(3) --->DOF2     ---------->ID1<---------ARR11(3)------->GAMYB  <---------REM1(1)        --------->ARR11(3)   gacccctttgatttttgtttttttcgtgaagctctctattctttacaaccacaaatgttaaaattgtagcgtgtccacagagatttgtgatctcagacaa  8207600                                  <---------HSFB2a(2)                       <---------AHL20(2)                   <---------AHL20(2)           ----------->RAV1(1)    --------->HSFB2a(2)          <----------ID1       <---------YAB1        --------->ANAC46 <---------AHL20(2)                                        <---------TOE2(3)        --------->ANAC58<---------AHL20(1)                                  <---------MYB52(2)        --------->ANAC58--------->AHL20(1)                        <---------WOX13(1)----------->GT1  <----------DOF2  --------->AHL20(2)            --------------->AGL15      --------->MYB46(3)      - ------ALFIN1    --------->AHL20(2)           <-----------GT1  <---------YAB1------->GAMYB         <-   cactctttagaagcaacaaatttatatatatttcttatagaagattattttctatgttttggaatgtgattgttttcaacaaacaaaggttatttctaag  8207700                                            --------->TOE1(2)                                           --------->ANAC58                                           --------->ANAC58                                          ------->TEIL                                   <---------AHL20(1)                                   --------->ARR11(3)                                          ------  --------->ANAC58                 <---------AHL20(2)               --------->ARR11(3) --------->HSFB2a(1)  --------->ANAC58                 --------->AHL20(1)               <---------ARR11(3) <---------HSFB2a(1) --------->DOF2                 --------->YAB1          ---------->DOF2              --------->ARR11(3) -----ZmHOX2a(1)                --------->AHL20(2)  ---------->DOF2<---------CCA1(2) <---------ARR11(3)   aggaaagaaatttcaaaaattgtttttaagagaataatattttgcacctaagaaaaaagaaagagaaacatatctatacaaaaatgagaacttcccaaaa  8207800                               ----------->HVH21                               --------->ALFIN1                             <---------ANAC58                             <---------ANAC58                             <---------ANAC46                           <------MYB83                           <------MYB46(1)                          --------->MYB46(2)                          <---------DEAR3(1)                       <---------ANAC46                       <---------ANAC58                       <------MYB46(1)                       <------MYB83                            --------->ARR11(3)                       <---------ANAC58                        <---------ARR11(3)                      <---------MYB46(3)                       --------->ARR14(2)                  <---------MYB46(3)                          --------->RVE1(1)                <---------ARR14(2)<---------WOX13(1)          --------->CCA1(1)         ---------->DOF2 <--------P----------->GT1    <---------ANAC58  <---------ALFIN1--------->MYB52(2)                  <---------ANAC58 --------->At4g35610  --------->MYB59   ---------->DOF2<----------DOF2    ---------->DOF2 ---->DOF2     <------ZmHOX2a(1)  <---------ANAC46<---------At4g35610  <-----------HVH21   atcagcactctcaaagaggatagttgggtaggcgtgatggataaaagagttgagatgctttcaaatatcttcttgtcaaagaggctacttatatgaggga  8207900  Previous    Next  AGI:  At4g14240.1    Description:  similar to CBS domain-containing protein-related [Arabidopsis thaliana] (TAIR:AT4G14230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71090.1); contains InterPro domain Cystathionine beta-synthase, core (InterPro:IPR000644); contains InterPro domain Protein of unknown function DUF21 (InterPro:IPR002550) Range:  from: 8204342    to: 8207403    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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