Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------AHL20(2)                           ----                                                    --------->AHL20(2)                        ------- --------->DAG2                                  --------->AHL20(2)        --------->YAB1     ------- >ARR14(2)                <----------DOF2   --------->AHL20(2)--------->DAG2    <---------At4g35610 -ARR14(2)          ---------->DOF2   --------->AHL20(2)     ---------->DOF2    --------->At4g35610 -GLK1(2)  <---------AHL20(2)     --------->ICU4--------->AHL20(2)  <---------ARR14(2)     --------->TOE2(3)   caaaaattgatattttttctaacaaagacttttctaaagattaaaaaaaaataaaaaaattcagaaagcgaaaccagtcgtaatctgaagaaacattaat  8188400                                            ---------->DOF2                                  <---------ICU4                    --------->DAG2-------->ATHB1                                              -------             --------->ANAC58     --------->ATHB12                                            ------- ----->AHL20(2)    ---------->DOF2--------->ATHB51   --------->ANAC46          <---------ICU4 <------ -->YAB1     --------->ANAC58    --------->ICU4      --------->ANAC58         --------->ICU4  ------- -->WOX13(1) --------->ANAC46    <---------YAB1      --------->ANAC58         <---------ATHB12-------   caaatagaccattacaagacaaaaaggaagaaaccattattgctacaaaagttacacacaaaaaaaaaacacatgaagaaatcattctaactagacccga  8188500                         ------>MYB46(1)                         ------>MYB83                   <------ZmHOX2a(1)                       <---------MYB59        <<<<<<<<<<<<<<<<<LFY              ----------->GT1                --------->TGA2(1)                                      - -->ANAC58    --------->ANAC58               <---------bZIP60(1)                             -------- ---->HVH21   --------->ANAC58               <---------TGA2(1)                               -------- ---ETT(1)--------->ANAC46                   --------->bZIP60(1)                          --------->GLK1(1) -->ANAC46--------->ANAC58                ----------->TGA1        <-------TEIL            <---------GLK1(1) -->ANAC58--------->ANAC58                ----------->HVH21 ---------->DOF2      ---------->DOF2-----   caagagattaacacacaagtaaaaaccgaactagacccgataatgtgacgacattggaggaagaaagatgcaaaattgggacttaaagaaggaaacccta  8188600                       ------->TEIL                       --------->GLK1(2)           -------->HAHB4           --------->ATHB12                                        <-------GAMYB           --------->YAB1             <---------ZAT14             <-----------RAV1(1)        <---------ICU4--------->ARR11(3)             --------->GLK1(2)        --------->YAB1--------->ARR14(2)             --------->ARR14(2)     --------->YAB1   <---------ARR14(2)  --------->ALFIN1  --------->ALFIN1 -------->ARR11(3)  ----------->ARR10 --------->ZAT14<---------ARR14(2) ->TOE2(3)--------->ICU4           --------->At4g35610     ------->MYC3 ->TOE1(3)<---------YAB1----------->RAV1(2)     ------>ZmHOX2a(1) --------->ALFIN1  <---------TOE1(3) ----->DOF2<---------ICU4<---------LBD16  <---------AtMYB61<-------MYC3             <---------TOE2(3)   aagacattgataatgattagggaagaacctggagagttgctgcagtggtcctgagaatccatgtgtgtgtgttggggttttttttttaggtttttagaga  8188700                                                         ------->TEIL                                                      --------->ICU4                                                      <---------ATHB12                                                 --------->ANAC58                                                 --------->ANAC46                        ---------->DOF2                                                 --------->ANAC58             *TSS   <----------ID1                                             <---------AHL20(2)            --------->GLK1(2)                                            --------->AHL20(2)            <---------GLK1(2)                 <------------MYB.PH3(1)    <---------AHL20(2)            <---------ARR11(3)               <-----------GT1          <---------AHL20(2)                --------->ARR11(3)    -----   <------ZmHOX2a(1)           <---------LBD16 ---------->DOF2           <---------RVE1(1)      -----   aggaaggagagaagtagtaacagtttcagtttttggggagttttaatttaaaagcaatgaatgtgagagagagagagattttggaaaacgaagaagcgaa  8188800                                                              ------>NtERF2                                                              --------->PCF2                                                             --------->TCP20                                                             --------->TCP15(1)                                                             <---------PCF2                                                            <------NtERF2                                                            --------->ATERF1(1)                                                            <---------TCP23                                                            <---------TCP15(2)                                                           <---------ATERF1(1)                                                           <---------MYB46(3)                                                          --------->ALFIN1                                                        <---------ANAC58                                                        <------MYB46(1)                                                        <------MYB83                                                        --------->ALFIN1                                                        <---------ANAC58                                                        <---------ANAC46                                                       <---------MYB46(3)                                                       --------->MYB55(2)                                                       --------->MYB111(2)                                                       --------->MYB111(1)                                                       <---------DEAR3(1)                                                      <--------P------------>CBF                                                      --------->ALFIN1                                                      <---------MYB55(1)                                                      <---------ANAC46                                                     <---------MYB52(1)                                                  ------>ZmHOX2a(2)      <---------YAB1      --------->ZAT18               ------>MYB83<---------ARR11(3)      <---------AHL20(1)      <---------ZAT18               ------>MYB46(1)<-----------RAV1(1)  --------->AHL20(2)          <  --------->DAG2               <-----------GT1  --------->ARR11(3)      <---------AHL20(2)     <----- ---------->DOF2            <---------ANAC55(2) <---------ARR14(2)      --------->AHL20(1)  <-------TEIL ---->ANAC58                --------->ANAC55(2) --------->ARR14(2)    <---------YAB1    <-------TEIL< ---->ANAC58     --------->ANAC46 <---------MYB59<------ZmHOX2a(2)   --------->AHL20(2)--------->CCA1(2)   gcaaaaagcccactactacaaacaacactcacttaaccaaactaaacgacgatctggtgggtggggcccaatattatattagttagtagatacattcgta  8188900                                                                                                  <--                                                                                                 <---                --------->ATHB12                                                               ------               <---------YAB1                                                               ------>MYB83             --------->YAB1                                            <------MYB83        --------->MYB52(1)        <---------GLK1(2)                                    <---------ICU4               --------->MYB46(3)    <---------LBD16                          ------>MYB46(1) --------->YAB1         <---------MYB46(3) ---------------AtSPL8                       ------>MYB83 --------->YAB1     <----------DOF2------>MYB46(1) ----CCA1(2)<---------YAB1           --------->YAB1    <----------DOF2 <------MYB46(1) <-----------GT1 ---------------AtSPL3  --------->ATHB12    ----------->RAV1(1)<---------CCA1(2)    --------->MYB52(2)   tatttgtacggattattatcattggctcattgctaattctcatgaccaacaaaattcctttaatcatatcatttggtgacttttgtttgttaccaactga  8189000                                                                    <------ZmHOX2a(2)                                                                   <---------ARR11(3)                                                                   --------->ARR14(2)                                                                   --------->AGP1                                                                   <---------ARR14(2)         -------                                                      <------ZmHOX2a(1)                      <-------                                           <------------MYB.PH3(1) --------->ARR11(3)        <-------                                         <-----------GT1           <---------ARR14(3)      ------>ZmHOX2a(2)                                         --------->MYB52(1)        <---------AGP1 <---------GLK1(1)                                      --------->YAB1  =====================HOX2a_HOX2a    <------ZmHOX2a(2)      <---------YAB1                 <---------AHL20(2)<---------GLK1(2)         --------->ARR11(3)    <-----------GT1                  --------->AHL20(2)--------->ARR14(2)        <---------ARR11(3) -------MYB46(3)                    --------->AHL20(2)======================HOX2a_HOX2a  <---------ARR14(2) ------WOX13(1)    XXXXXXXXXXXXXXXXXXXX>MIR1887     <---------TOE2(3)------>ZmHOX2a(2)   --------->ARR14(2) --->ATHB12<---------ARR11(3) ----------->RAV1(1)  <-----------GT1 --------->ARR14(3)<---------LBD16   ttgttgttaccattatctcactaaacaaaatccaacaaattaataactgatttttaggattctttctaagatcttgagtaatagatattcggatcccgtg  8189100        --------->ATHB12        --------->ATHB51       <---------YAB1      <---------AHL20(1)      --------->AHL20(2)      --------->AHL20(1)      <---------AHL20(2)              <---------ANAC58     --------->YAB1                   <---------ANAC46                              --------->CCA1(2)    --------->ICU4                    <---------AtLEC2                             --------->ARR11(3) -->LBD16       <--------P            <---------ANAC58  --------->SPL7             --------->AHL20(1) --ANAC55(2)   <-------GAMYB<-----------GT1           --------->LBD16           <---------------AGL15 --ANAC46    <---------TOE2(3)  --------->ARR11(3)  --------------->AtSPL8   ----------->GT1   aatggaattataattggggttagagactattaactatcttgcatggaaactctctccgtacttcattcccgtttcagaattgaaatatatggaaactcac  8189200                                                                                      <---------AHL20(2)                      <---------YAB1       --------->ANAC58                           --------->AHL20(2)              <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                --------->YAB1             <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                --------->AHL20(2)             --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               --------->YAB1   --------->DAG2  <---------AHL20(2)      --------->ANAC58          <----------DOF2 <---------AHL20(2)  ---------->DOF2 --------->AHL20(2)    --------->ARR14(2)        <-----------GT1<---------YAB1xxxxxx   aaaaaaaagcgttttttaaattttatgtttgtaaacacgatggaaacgcgataaacattttctgaattttactttggaaacttataattaaaatttagaa  8189300  Previous    Next  AGI:  At4g14200.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO66985.1); contains domain PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED (PTHR10483:SF9); contains domain PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN (PTHR10483) Range:  from: 8185365    to: 8188778    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version