Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->GLK1(1)      --------->ZAT6   --------->MYB46(3)                                       --------->ARR14(2)     <---------YAB1  --------->MYB52(1)                                 --------->ARR14(2)   <---------ICU4  <---------MYB52(2)                                  <---------CCA1(2)        ----- ------TEIL    --------->RAP2.6(2)  <---------At4g35610            ------->TEIL <---------ARR14(2) --ARR10  ---------->DOF2           --------->At4g35610  --------->ANAC46       <---------GLK1(2)   atacattatcactaaagccgaactaacaaacaaacttgagctaaacccaagtttcaaacacagaacatgaatcaaatctccagatttcgcttccctagac  8177700                                                            ----------->RAV1(1)      <---------ZAT2                                     --------->ANAC46                   ---------     --------->ANAC58     ----------->GT1                --------->ANAC58                   ---------     --------->ANAC58     <---------ANAC46    --------->ZAT6<---------ALFIN1          <---------ANAC46 ---->ANAC46          <------ZmHOX2a(1)--------->LBD16   --------->ANAC58     <---------ATHB12   gcagagcaagctcgtagaataagaggaagcgtaaaatcatccggtctaacacaagactctcgccacatacgaagaaacaaatcaattgacttggaagcaa  8177800                                                                --------->At4g35610                                                                <---------At4g35610                                                              --------->HSFB2a(2)                                                              <-----------RAV1(2)                                                          ------->MYC3                                                          <-------PIF4                                                          ------->PIF4                          --------->AHL20(1)              <-------MYC3                          <---------AHL20(2)              ------->MYC4                             <-                          <---------AHL20(1)              ------->PIF5                             --    <------ZmHOX2a(2)    --------->AHL20(2)               <-------MYC2                             <-   <---------ARR14(2)   <---------YAB1                    ------->MYC2                             --   --------->AGP1     --------->YAB1                      <-------PIF5   --------->DAG2      <-------   --------->ARR14(2)--------->ICU4                 --------->DAG2      ---------->DOF2   --------->CCA1(2) >ANAC58             <---------ATHB12     ================================RAV        ---------->DOF2 >ANAC58             <---------YAB1       <-----------RAV1(1) <---------HSFB2a(2)   <------ZmHOX2a(1)   aacccgatctagagaactcaccgatgattatattccaagagaaaatgttgcgataaggcatgtgccagaagacagaaagcgaagtaggaaagagatggtt  8177900                                                                                    <------NtERF2                           --------->At4g35610                                    <---------ANAC46      <---------KAN4(2)    <---------At4g35610                         <---------ANAC58 --------ZAT2              --------->ZAT2                              <---------ANAC58        <----- ------->ZAT2              <---------ZAT2              --------->TOE1(2) --------->ALFIN1      <----- --------At4g35610  --------->ZAT2              <---------------------WRI1        <---------ANAC58 ------->At4g35610  <---------ZAT2             ----------->GT1         <---------ANAC46<---------ARR11(3) --MYB46(3)    <------ZmHOX2a(1)--------->At4g35610  <---------------AtSPL8       <---------ANAC58   cagcttggaataagcgaggacgagcttggagctgagcacaacgttggaatagagaaatgtacgaagaaggtgagcgtggagatggcgtagatgtttagcg  8178000                                          <---------ZAT14                                       <---------ANAC46                                    --------->GLK1(2)                                   <---------GLK1(2)                                   --------->ARR14(2)                                   <---------ARR14(2)                                  <------ZmHOX2a(1)                               <------ZmHOX2a(1)                            <-----------RAV1(2)        --------->DAG2         <---------REM1(1) <------ZmHOX2a(2)       --------->YAB1                                <---         <---------ANAC46  ==============HOX2a_HOX2a  ---------->DOF2                            <--- ----ANAC58               --------->ARR11(3)      <---------ZAT6               <---------ANAC46<----- ----ANAC58              <---------GLK1(1)--------->ZAT14        <----------DOF2               <-----   tttggagaatgatgtagaagcgagaagagatcaggaggattctgtgtagttactgataaagctcgagctttcaagaacattgcgaatagactcttcgtag  8178100         --------->ANAC58                                                    <---------AHL20(2)         --------->ANAC46                                                   --------->AHL20(2)         --------->ANAC58     <-------TEIL                               --------->ATHB12 ---ZmHOX2a(1)            --------->MYB111(1)                       <---------DAG2 ------------------WRI1  <--------P                            <---------At4g35610               <--- ----TOE2(2)            *TSS  --------->ZAT18         <---------ZAT14   <---------YAB1        <------ ----TOE1(2)     <------ZmHOX2a(1)               --------->LBD16    <----------DOF2     <----------DOF2   gagacgagtacaaggaagaggaagatggtaagtgcatcgcatcacaaaatccagagaatagtggaagatgctttatgatttaatccaaaactttatttta  8178200                                                                             --------->HSFB2a(2)                                                                     ------>NtERF2                                                                    <---------bZIP60(1)                                 ---------->DOF2                    --------->ANAC58                            <---------------AGL15                   --------->bZIP60(1)     <--------                            --------------->AGL15           <-----------RAV1(1)---------->DOF2                          --------->GLK1(1)             <---------YAB1       <---------HSFB2a(2)  <---------AHL20(2)      <---------GLK1(1)            ----------------------->TaNAC69(2)--------->HSFC1(2) --------->AHL20(2)     <------ZmHOX2a(1)      --------->At5g28300  --------->ANAC46     <---------HSFC1(2) ------YAB1           <---------TOE2(3)       ----------->GT1      --------->SPL7        --------->HSFB2a(1) ---AHL20(2)    --------->AHL20(2) ----------->GT1    <---------ICU4--------->ANAC58     <---------HSFB2a(1)   tgattttatatcaaattttaaaataaggaactcttaaaagtaatataactgtaaaatcatttttgttgggacgccatttctaaaagttcgaaatttccca  8178300                                                                                  --------->ARR14(2)                                                                               <---------ANAC58                                                                               <---------ANAC46                  ------------>CBF                              ------>ZmHOX2a(1)<------NtERF2            <---------ZAT18                             <---------ATHB12       <---------ANAC58         <---------ANAC58            ------------>AtMYB77--------->YAB1------->TEIL      --------->MYB46(3)      <----------DOF2            --------->ZAT6         ===============HOX2a_HOX2a<---------ARR14(2)< ---GT1  <---------ANAC58        <---------ALFIN1       <------ZmHOX2a(2)     <---------LBD16 -------   gtctctctctttcgcgctctcacaatgttcttccaacactcacagttgcaaaactccgatcatctcctccatgaatctatggcggattcaaaccatcaat  8178400                 --------->MYB52(1)                 <---------DOF5.7(2)                ----------->HVH21        <------NtERF2       <---------RAP2.6(3)       ------>NtERF2------->GAMYB      --------->RAP2.6(2)      --------->ANAC46      --------->DEAR3(1)      <---------ATERF1(2)      --------->ATERF1(2)      --------->RAP2.3(3)                                              <----------DOF2      --------->RRTF1(2)     <------ZmHOX2a(2)                  --------->KAN4(2)      --------->RRTF1(3)    <---------ARR14(2)    ------>NtERF2--------->HSFB2a(1)      --------->DREB2C(2)   --------->ARR14(2)   --------->DEAR3(1)  --------->At4g35610      --------->RAP2.3(2) --------->DEAR3(1)     --------->MYB46(3)  <---------At4g35610     --------->ATERF1(1)  --------->MYB46(3)   ------>NtERF2   --------->KAN4(1)     --------->ERF1--------->MYB46(3)          <---------ATERF1(1)  <---------YAB1     --------->ORA47(2)  <------NtERF2        ----------->HVH21<---------HSFC1(2)     --------->RAP2.3(1)------>NtERF2        ------>NtERF2     <---------KAN4(1)                    <    <---------RAP2.3(1)<---------ALFIN1      --------->LBD16   --------->HSFC1(2)                   = ----------DOF2--------->DOF5.7(2)          --------->ANAC46   <---------HSFB2a(1)                 -- -->WOX13(1)  --------->At4g35610          <---------LBD16    <---------KAN4(2)                    <-   ctctttcgccgccatgcgctaacggccaccgatccacaatttctctccgcgacgaccaagggggaacattctgcttaatctgcttctccaatctcgtctc  8178500                --------->ZAT14                <---------ZAT14            <---------ALFIN1              <---------ZAT2    --------->ANAC46                      --------->ZAT2                         --------->TOE2(3)    --------->ANAC58                      --------->At4g35610             ------>ZmHOX2a(1)      ----    --------->ANAC58                      <---------At4g35610      ------>MYB83  <---------MYB59 <---   <---------LBD16                   --------->REM1(1)             <---------ARR14(2)           ----- ------ZmHOX2a(2)                  <----------DOF2                 --------->ARR14(2)           <---- ==================================HOX2a_HOX2a                     ------>MYB46(1)            ------- ------->ARR14(2)               --------->ANAC46                 <---------MYB59--------->HSFB2a(1) --------ARR14(2)           ------>ZmHOX2a(1)                  ------->TEIL    ------->TEIL------>ZmHOX2a(1)   cgatccacgcattcccactgtacatgtctcctacgcgcttcaccagctctcaatcgctatctctgaacctatcttcctccgaaccttactctcctctcat  8178600  Previous    Next  AGI:  At4g14170.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67310.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8176319    to: 8178124    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g14180.1    Description:  ATPRD1 (ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECT 1); protein binding / protein homodimerization. similar to hypothetical protein OsJ_013794 [Oryza sativa (japonica cultivar-group)] (GB:EAZ30311.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66987.1); similar to OSJNBa0020I02.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE02100.2) Range:  from: 8178325    to: 8183510    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version