Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------ICU4                                       --------->YAB1                                      <---------YAB1                                      --------->ICU4                                   <---------ATHB12 ---------->DOF2           --------->SPL7 ------>TOE2(3)         <---------ANAC58 ----->ANAC46           <---------ANAC58                                    <---------AHL20(2) ----DOF5.7(2)          <---------ANAC55(2)<---------ARR11(3)               --------->AHL20(1) ---WRKY45              --------->ANAC55(2)--------->ARR11(3)               --------->AHL20(2) ---WRKY12              <---------ANAC46 <---------YAB1          -------->P--------->AHL20(2)     <-- ---WRKY38(1)       <---------ANAC58<---------ICU4           --------->ANAC58                   ----- ->DOF5.7(2)        <---------ANAC58--------->YAB1           --------->ANAC58              ---------- >TOE2(3) <-----------RAV1(2)    --------->WOX13(1)     <---------LBD16--------->YAB1  ----------->GT1   cgtaaaagtaacccagaagatggattgcgtaaggccaatcatcatgatattcaattccttcggaagcaacctataaaaaaaattaagaagcgataaatcg  8134700                               --------->TOE2(3)                               --------->TOE1(3)                                                   --                         --------->ANAC46                                                         <--                      <---------ZAT14                                                             ---      --------->ZAT6--------->ANAC46                                                              ---    <-----------GT1 --------->bZIP60(2)                                                          <--- -------TOE1(2)--------->ARR14(2)                 --------->MYB52(1)      ----------->RAV1(2)    ---- ---->TOE1(2)  <---------ARR14(2)   <---------ATHB12 ------->GAMYB  <-----------GT1              ---- >DOF2--------->ANAC46--------->ZAT14  ------->TEIL --------->MYB46(3)   ------->TEIL            <---   aacgattaacaccacaaaatccacttcacaaaaccctaatgaacatcagaaacaacgacagcgagagaaattacgaacctgaagcatgagagtatcgcag  8134800                                       ======================HOX2a_HOX2a                                      <---------------AGL15                                      --------->TOE2(3)                                      --------->TOE1(3)                                 --------->HSFB2a(1)                                 <---------HSFC1(2)                           ------>NtERF2               <-------TEIL                           <------NtERF2              <------ZmHOX2a(2)                          ------>NtERF2------>ZmHOX2a(1)                          --------->RAP2.6(2)         --------->CCA1(2)              ---------->DOF2    --------->HSFC1(2)  --------->AGP1                    --------->HSFC1(2)   <---------------------WRI1 ---------->DOF2        --------->ARR14(2)                <---------HSFC1(2) ------->MYB52(1)        <---------DEAR3(1)          --------->ARR11(3)  <---------ZAT14 -------GLK1(1)          <---------RAP2.6(2)         <---------ARR14(2)  <---------ZAT18 ------>GLK1(1)          --------->ATERF1(2)         <---------ARR11(3)  --------->ZAT14 ------>CCA1(2)          <---------ATERF1(2)       --------->HSFB2a(1)   --------->ZAT18 <----------DOF2 ------ARR14(2)         --------->RAP2.6(3)      ---------->DOF2    <---------YAB1<---------HSFB2a(2) ----->ARR11(3)    --------->ARR14(2)<-----------------AGL1  <---------ANAC58     --------->HSFB2a(2) ----->ARR14(2)    <---------ARR14(2)----------------->AG    <---------ANAC46 --------->ZAT14     <-- ------ARR11(3)   <------ZmHOX2a(1)  ----------------->AGL1  <---------ANAC58 <---------ZAT14     ---   atatcggcgattttgtcaaaggatttggcggccaaagcttccttaacaggcgaaagatccatgacttgtttcgattgcactactctcgaagcttttgcga  8134900                                     >>>>>>>>>>GT-3b                                  ----------->GT1                                ---------->DOF2                            --------->LBD16                           --------->LBD16                          <-----------RAV1(2)                          <---------LBD16                <-----------GT1                         <---------ZAT14     --------->GLK1(2)                                     --                         --------->ZAT14  --------->AHL20(1)                 ------------>CBF      --                       --------->ANAC58   <---------AHL20(1)             <---------ICU4           ---                       --------->ANAC46   --------->AHL20(2)           --------->GLK1(2)         ----               *TSS    --------->ANAC58   <---------AHL20(2)          --------->YAB1            ----- -------At4g35610    --------->AtMYB61   --------->AHL20(2)        --------->YAB1               ----- ------>At4g35610   --------->MYB46(3)   <---------AHL20(2)      --------->AHL20(2)          --------   agatgacaattctactcccaaaaccactccagggaaaagaaaaataaattctgtgagatttacaggttttaataatcttttcaatacggtttacttaaac  8135000                                                                      --------->YAB1          <-----------GT1                                            <---------YAB1          >>>>>>>>>>WRKY38                                        <---------ATHB12          >>>>>>>>>>WRKY26                                    >>>>>>>>>E2Fd                    >>>>>>       <------------CBF                                       >>>>>>>>>E2Fc                    >>>>>>     --------->AHL20(2)                                      --------->LBD16                  -------     <---------AHL20(2)                                      ------>NtERF2                    ------>NtERF2 --------->AtMYB61                                          <<<<<<<<<<E2Fa --------->ANAC58  <<<<<<<< ---->MYB83  <---------MYB59                                --------->ANAC58           <---------DEAR3(2) ---->MYB46(1)                           <---------ZAT18    --------->ANAC46   ------>NtERF2 -------- ------>ORA47(1)         <------ZmHOX2a(1)           --------->MYB52(2)    --------->ANAC58  -------- ----->DEAR3(1)         ----------->GT1  --------->ZAT18    --------->ANAC58  --------->DEAR3(1) ---->DEAR3(2) ------>MYB83           --------->ANAC58     <---------LBD16--------->DAG2     -------- ---->MYB46(3) ------>MYB46(1)        --------->ANAC58  <-----------GT1  ---------->DOF2    <-------- -->DOF2  >>>>>>>>>>WRKY43       <----------ID1   --------->TOE2(3)--------->YAB1      <---------MYB46(3)   cgaccaaaaaattgaccaaacacaagaggataaatgggccaagcccactaagccttagtttcccgccaaacatcataaagccacccggtctgttcccgcc  8135100                                                                                             <-------                                                                                             --------                                                                                             ------>ZmHOX2a(1)                                                                                            ---------                                                                                           ==========      --------->MYB52(1)                                                                   ------>ZmHOX2a(2)    --------->MYB46(3)                                                                    <------ZmHOX2a(2) >>>E2Fc                                                                                  =========== >>>E2Fd                                                         <------NtERF2           --------->ARR11(3) -->LBD16                                                       ------>NtERF2            <---------GLK1(2) <<E2Fa                                                        <---------ANAC58          <---------ARR11(3) ->ANAC58                     <---------ALFIN1                 <---------ANAC46          --------->ARR14(2) ->ANAC46                   --------->ANAC58                   <---------ANAC58          --------->AGP1 ->ANAC58                   --------->ANAC58       --------->At4g35610                   <---------ARR14(2) -LBD16            *TSS     <---------ALFIN1       <---------At4g35610            <------NtERF2     <   aaaataacaaacagtctctctcactctcacacacactctctctctctctctgtagctctctcttggcgcgagttctaccatggccgaatcagatcctata  8135200  <------ZmHOX2a(1)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------AGL15                                                 --------->ANAC58 ------->AGL15                    <-------GAMYB                --------->ANAC58 -------->AGL3 <----------DOF2   ----------->GT1      --------->TOE1(3)                          <--- ========HOX2a_HOX2a             --------->MYB52(2)   --------->TOE2(3)                         <---- ========HOX2a_HOX2a           <---------MYB52(1)  <---------GLK1(2)                         ------>ZmHOX2a(1) ---------TOE2(3)    ---------->ID1   <-----------GT1 <---------DAG2  <-----------GT1 <---------ATHB12   ttgaggaagaagatgcgattttcgtcttcttcagttcgttatactacctctcagaaccttatggcaagcaaattacgaactcagagcaatcgttcctccg  8135300                                       <-----------TGA1                                      --------->ANAC46                                   ------>ZmHOX2a(2)                                  <---------HSFB2a(1)                                  <---------GLK1(1)                                  --------->HSFB2a(1)                                  <------ZmHOX2a(2)                                  --------->GLK1(1)                                 <---------ARR11(3)                                 --------->ARR14(2)                                 <-----------ARR10                                 --------->ARR11(3)                                 ------->TEIL                                 <---------ARR14(2)               ----------->GT1                                <---------CCA1(2)             ---------->DOF2                              --------->ANAC55(2)           <------ZmHOX2a(2)                              --------->ANAC55(1)    ----------->HVH21                              <---------ANAC55(2)   <-----------HVH21                              --------->ANAC58      <-----------TGA1                              --------->ANAC58     --------->ANAC46 ------MYB52(1)              <---------LBD16       <---------ANAC58 -----SPL7                <-----------HVH21        <---------ANAC58      ----------->GT1 --------->LBD16   ttcgatttgcatccccattgtctcacattgtcacggatcttcgtcaccatcatgcgtcaccgatcaaagggaaaattgttactcaaatgccccgaacttg  8135400                 <---------ARR14(2)                <---------GLK1(2)            --------->REM1(2)                ------>ZmHOX2a(1)                                  -----       <---------At5g28300       <---------ANAC55(2)                                     <-----------ARR10     ----------->HVH21           --------->ANAC55(2)                  <----------DOF2   <---------GLK1(1)    <-----------HVH21      <-----------RAV1(2)                 <---------WOX13(1)       --------->GLK1(1) <---------ANAC58--------->GLK1(2)  --------->ARR14(2)       --------->ATHB12  ---------->DOF2  ----- <---------ANAC58--------->ARR14(2) <---------ARR14(2)      <---------YAB1   ----------->HVH21 ------   ttctcgtgtcaccgtgaagaatctgtgtctcagacgcgtattctctcctagttccatctctagtgattgggactttcatgtgaaagggggaaatctaacc  8135500                                                                    <---------ANAC46                                                                    <---------ANAC58                                                               ----------------------->TaNAC69(2)    <---------------AGL15                                   <---------ARR11(3)   <-----------------AGL3                                   --------->ARR11(3)   ----------------->AGL3                         <---------YAB1    <---------ANAC58  --------->At4g35610                          --------->ICU4  <----------DOF2 ---->TOE1(2)  <---------HSFB2a(1)        ----------->GT1 <---------TOE1(3) ---->TOE2(2)  --------->HSFB2a(1)        --------->YAB1  <---------TOE2(3) --->MYB46(3)<---------GLK1(2)    --------->ARR14(2)   <---------AHL20(2)                        <---   aaggagctaaatgtggaatctccttgcgatactccgaattctaatggtaattcttattttaaggtctttttcttgtacaagtttttctaagaaaatttag  8135600  Previous    Next  AGI:  At4g14110.1    Description:  COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9). Identical to COP9 signalosome complex subunit 8 (CSN8) [Arabidopsis Thaliana] (GB:P43255;GB:Q8GWZ4); similar to hypothetical protein [Vitis vinifera] (GB:CAN67908.1); contains InterPro domain Signal recognition particle, SRP19 subunit; (InterPro:IPR002778) Range:  from: 8132881    to: 8134915    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g14120.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23740.1) Range:  from: 8135119    to: 8136962    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version