Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                       --------->CCA1(2)                                                                      <---------AGP1                                                                      <---------ARR14(3)                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)      ===========================HOX2a_HOX2a                          <---------ARR14(2)      ------>ZmHOX2a(2)         <---------At4g35610                   --------->ARR14(3)    <---------ARR11(3)          --------->At4g35610                   --------->ARR14(2)    --------->ARR11(3)    <------ZmHOX2a(1)                           --------->AGP1 ----ANAC46              <------MYB46(1)                             --------->RVE1(1)            <-- ----->GT1               <------MYB83                               ----------->ARR10      <---------TOE2(3) --ANAC46              <--------P            --------->At4g35610  ---------->DOF2         <---------- -MYB52(1)         <---------WOX13(1)     ---------->DOF2    <---------ANAC46    --------->MYB52(1) -RAV1(1)        --------->ATHB12     ----------->RAV1(1) <----------DOF2   ----------->RAV1(1) <----   taaaatgatcttgtaagagtaattggtaggagtaagcagacaacaaaagctgaaacatcccttttgtgtaaagatctgcaacaaaaccgaattaacattt  8126500                                                                                       <---------AHL20(2)                                                                                    <---------AHL20(1)                                                                                    --------->AHL20(1)                                                                                    --------->AHL20(2)                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                                    <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                               <---------AHL20(2)                                                  --------->ICU4               --------->AHL20(2)                      --------->YAB1         <---------ANAC55(2)        <---------ARR11(3)    <---------ATHB12  <---------ICU4         --------->ANAC55(2)        --------->ARR14(2) ---------GT1         --------->ATHB51       --------->ANAC58           <---------ARR14(2)  <-------- -GT1                --------->ICU4          --------->ANAC58          <---------CCA1(2) <---------AHL20(2) -----AHL20(2)--------->AHL20(2)      <---------ICU4         <---------At4g35610<---------AHL20(2)---   tatctaatcaaacaaataaaacaattatcgctaaatcaaattatgtcaagtaatgtttttgtaagatgctagtatatctgattaaatatattattttatc  8126600                       --------->ARR11(3)             --------->ARR11(3)             <---------ARR11(3)     <----------DOF2   --------->ANAC58             --------->ARR14(2)  --------->ARR11(3)   --------->ANAC46            --------->RVE1(1)    --------->GLK1(2)<------ZmHOX2a(1)    <---------At4g35610--------->GLK1(2)         <----------ID1                <------ZmHOX2a(1)<----    --------->At4g35610<---------ARR11(3)   <----------DOF2        --------->DAG2       <---------GLK1(1) -AHL20(2)  --------->CCA1(1)    <---------ARR11(3)   --------->ANAC58     --------->TOE1(2) <------- ------>MYB52(1)   --------->HSFB2a(2)  <-----------GT1          ---------->DOF2      <------ZmHOX2a(1)   taatggagctcaaaatatcttccaaaatcttacaaaatcttttagccttttaggacaagacactaaaaaaaggctagcctaggaagtaggaactcacact  8126700                           ------->GAMYB                                           <---------DAG2   -    --------->ZAT14   ------------>CBF                                             <----------DOF2  - <<<<<<<<<TBF1   ----------->TBP                ------------>CBF        --------->At4g35610         - ------DOF2  <---------ANAC58        --------->TOE1(3)                  <---------At4g35610  <------- --ALFIN1    <---------ANAC58        --------->TOE2(3)         --------->ICU4--------->YAB1 ---------   ttcttcttcactcttgcctacaaatacaatcgccaaaaaccctaaatttctacaatagttgagtcattttggtgagctatcttcactttagcctacaaat  8126800                                        <---------ANAC58                                  --------->ANAC46                                  --------->ANAC46                                  --------->ANAC58                                  <---------ANAC55(2)                                  --------->ANAC58                            <------MYB83                              <-----------GT1                                 <------MYB46(1)                            <---------AHL20(2)                              <--------P -------->ANAC58    <----------DOF2     <---------ANAC46                   <-------GAMYB -------->ANAC46   ------>ZmHOX2a(2)    <---------ANAC58                   ========================== -------->ANAC58 <---------ARR11(3)<---------STY1(2)                      <---------MYB46(3)   <----- --------AGL15   --------->ARR11(3)--------->STY1(2)                <---------GLK1(2)      <------ZmHOX2a(1) -->TBP ------------>CBF<---------AHL20(2)   <------------------------ANAC81=========================   acaagtaagtttcaatatcgatctttttattttttcaagctagcgtgtttgtttgtttgtttgattcttagcttctcggttggaacacgtagaggaagat  8126900                   <<<<<<<<<MYB2          <---------CCA1(2)        <---------ANAC58        =================bZIP_DOF        =============================MYC_MYB            <---------HSFC1(1)        <---------TGA1a                      ------>ZmHOX2a(2)        ============================MYC_MYB--------->ARR11(3)        --------->O2                       <---------ARR14(2)        <---------ANAC58              ==============HOX2a_HOX2a        =================bZIP_DOF ---------->DOF2       <---------HSFB2a(2)                        <-        <---------ANAC46    <---------MYB46(3)          --------->HSFC1(1)                         --        <---------O2    <---------TOE1(3)  <---------AGP1                                          <-        --------->TGA1a <---------TOE2(3)  --------->ARR14(2)                   --------->LBD16    <-    <-----------HVH21  <-----------RAV1(2) <---------ARR11(3)       <---------ICU4                 -- =================MYC_MYB   --------->MYB111(2)    <---------MYB46(3)         <---------LBD16      <- -------CBF   <----------DOF2<-------GAMYB ------->TEIL >>>>>>>ZML2--------->ICU4  ----------->HVH21 =================MYC_MYB  <--------P <------ZmHOX2a(1) --------->HSFB2a(2) <-----------GT1       <--   tgaatcggtctcgtgtctttggttttcaggttgttgaaaaggatggatcttagtggttctagagatgtaatcagtagtttaccggatgacattagttccc  8127000             --------->ANAC46            ------>ZmHOX2a(1)        ------>ZmHOX2a(1)     ---------->ID1 <---------ANAC58 <---------ANAC58                 <---------ALFIN1 --------ARR14(2)            --------->At4g35610 ------->ARR11(3)         --------->At4g35610                            <----------DOF2 --------ARR11(1)         <---------At4g35610                           <---------ANAC58 --------ARR11(3)         <---------HSFC1(2)                            <---------ANAC58 --------->ATHB12 ------->ARR14(2)         --------->HSFC1(2)                        <----------DOF2   <---------ICU4 ----------ARR10         --------->GLK1(2)                   --------->At5g28300      --------->YAB1 -------CCA1(2)     ---------->DOF2          <----------DOF2 <------NtERF2    ---------->ID1   <-----   atatcttgtccttcctccccactaaagaagctgcttccacttcggttctttcgaaaaaatggcggtatctctttgcttttgtccctaatcttgatttgga  8127100                                       --------->HSFB2a(2)                              ----------->GT1                             --------->ANAC58                             --------->ANAC58     <---------TOE2(3)               ----------->GT1                  ------>ZmHOX2a(1)    <---------HSFB2a(2)                     <---------AtLEC2  ----                  --------->LBD16 <---------HSFB2a(1)                      <----------DOF2      -----                 --------->TOE1(2)--------->HSFB2a(1)                     <---------ANAC58      <----              --------->ARR14(2)  --------->HSFC1(2)                --------->ALFIN1            <---- ----AtLEC2   <---------ARR14(2)  <---------HSFC1(2)     <---------ANAC46 <---------ANAC58   ------>ZmHOX2a(1)   tgactctgtttatctgaatcctgagaatgagacggaaatttctacaagttttatggattttgtggatagagtgttggctttgcaaggtaattctcctcta  8127200                                                                                                   <-                                                                                       ------>ZmHOX2a(2)                                                 <---------ANAC46                     <------ZmHOX2a(2)                                                 <---------ANAC58                    <---------ARR14(2)                                                 <---------ANAC58                    --------->ARR14(2)                                           <---------YAB1                       <---------ARR14(2)---                                          <---------ARR11(1)                    --------->ARR14(2)<--                                         <---------CCA1(2)                     <---------CCA1(2)  ---   <---------ARR11(3)                  <---------ANAC55(2)                    ---------->TaMYB80<---- ----->ANAC46                          <---------ANAC58                    <---------ANAC46<---------ARR11(3) ---->ZAT14                            <---------ANAC58         <-----------RAV1(1)  --------->ARR11(3) -----ZAT14---------->DOF2             --------->ANAC55(2)      --------->ALFIN1------->TEIL    ----- -----REM1(2) --------->ATHB12   ------>ZmHOX2a(2)         <---------AHL20(2)--------->ALFIN1------>ZmHOX2a(2)   cacaagttctctctaaagattggagatggcattgatccagtccgtatcattccttggataaataatgtgttggaacggggtgtatccgatcttgatctac  8127300 ----------------AGL3 <---------At4g35610                                                       <---- -------->RAV1(2)     --------->At4g35610       --------->ANAC46                   <---------CCA1(2) -------At4g35610 --------->ARR14(2)            --------->ANAC58          --------->ALFIN1   <------- ------>At4g35610 <---------ARR14(2)            --------->ANAC58       <---------TOE1(3)   --------->ATHB12 -----ALFIN1--------->YAB1                    <---------AtLEC2     <---------At4g35610 --------->TOE1(2) ---->REM1(1)  <---------GLK1(2)   ----------------------->TaNAC69(2)  <---------TOE2(3) <---------TOE1(2)   acctgaatttggaatcagaatttctgcttccttcacaagtctacttgtgcaagacactggtttggctgaagctaaggtttgggctatatcccacgattga  8127400  Previous    Next  AGI:  At4g14096.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At4g14096 [Arabidopsis Thaliana] (GB:Q94B46;GB:O23269); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14103.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 8124410    to: 8126509    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g14103.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At4g14103 [Arabidopsis Thaliana] (GB:Q8L7H1;GB:O23269); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14096.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 8126943    to: 8128331    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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