Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------------->AGL15              ----------------->AGL2                               <---------ZAT18            --------->ANAC58             --------->ZAT14     --------->TOE2(3)                      -            --------->ANAC58             --------->REM1(2)  <---------ICU4                          <        --------->ANAC58           -------->P               <--------HAHB4                     ------        --------->ANAC58   <-------TEIL  <---------ZAT14    --------->ATHB12                <-------- -------->ZAT6----------------->AGL3--------->MYB46(3)     <---------YAB1          <---------AHL20(2) -----DOF2 --------->WOX13(1)     --------->WOX13(1)       --------->ICU4         --------->AHL20(2)<   tagcactattaagcaatccacatttagcatacatatcaaccagtgaagacttaacaacttcatcattagcatactcagagactataaaatggcaatgaac  8105100                                 --------->ANAC46                                 --------->ANAC58                                --------->ZAT2                    --------->TOE2(3)                                     --------->ANAC58      --------->LBD16------>ZmHOX2a(1)                                    --------->ANAC58     <---------ANAC55(2)         --------->ANAC58                         -------->P     --------->ANAC55(2)    --------->At4g35610                       --------->ANAC58     ------>MYB46(1)  ------>NtERF2    ------>ZmHOX2a(2)                                  --------->ANAC46     ------>MYB83 --------->ARF1   <------ZmHOX2a(2)                                   --------->ANAC58  --------->DEAR3(2) ---------ANAC58 <---------ARR14(2)                                 <------ZmHOX2a(1)  --------->PCF2 ->TEIL          --------->ARR14(2)                              <---------ICU4  <---------ZAT2 -ATHB12         <---------ARR11(3) --------->TOE2(3)         --------->YAB1------->GAMYB--------->MYB46(3) ---------ANAC58 --------->ARR11(3) --------->TOE1(3)       <---------ARR11(3)--------->LBD16 -------   ttgcctcccgtgatcaatagatcctaagttagcacaagccttaacaagagccgagaacacaaaatcatcaggacgcaacccagagctcgaacccactgaa  8105200                 -------->P              <---------ANAC58            --------->At4g35610     <---------YAB1               --------->ATHB12                       ------>ZmHOX2a(2)        <--     <---------ZAT6            <---------ANAC46                        <---------ARR11(3)        ---- <---------ARR14(2)            <---------ANAC58             <-----------RAV1(2)         <---------ANAC46 -->ZAT14     <---------ANAC58 <---------ANAC58          ------>NtERF2 --------->ARR11(3)      <-----   gaaaatactgatagtgtcttaccagagagattggcttgattaagagctgtgagaaccgaggcccaggcgatgtgatctctatgaggcatttcgtcgaaca  8105300                         --------->GLK1(1)                         <---------GLK1(1)                     --------->DEAR3(1)                                           <---------ANAC58                    --------->ANAC58                                             --------->ZAT2                    --------->ANAC58                                             <---------ZAT2                  <---------ALFIN1                                            --------->LBD16                 <---------ABI4(2)                      ---------->DOF2    <------ZmHOX2a(2) -------LBD16    --------->ZAT2                  <-------GAMYB ----------->RAV1(1)<---------ANAC58 ------->RAV1(2) --------->At4g35610            --------->ALFIN1          --------->ARR14(2)    <---- ----ALFIN1   --------->At4g35610               <-----------RAV1(1)       <---------ARR14(2)---------   cctggagagcatgagaagcagcaccgcatttcccatagacattgacaagtgtgttggccaaagggcaacattgaacgatcccgagcttgacgatgtgggc  8105400                                               <---------At4g35610                                               --------->At4g35610                                           --------->ALFIN1                                         <---------ZAT2                                         --------->At4g35610                                         --------->ZAT2                                       -------                                         <---------At4g35610                                <--------                                        <---------ARR14(2)                                 <---------ANAC58                                        --------->ARR14(2)                         <-----------RAV1(1)                                      ----------->ARR10                            <---------MYB46(3)                                <-----------RAV1(1)                              --------->At4g35610                                ------>ZmHOX2a(1)                             <---------At4g35610                               <---------LBD16 <---------ZAT2   <---------ANAC46 <---------At4g35610                    <---------TOE1(3)<------NtERF2       <---------ARR11(3) --------->YAB1 <---------ANAC58      <----------DOF2         ----------->RAV1(2) --------->At4g35610 --------->ANAC58<-----------RAV1(1) -----AtLEC2   --------->MYB55(2)    <----------CDC5     --------->ARR11(3)<-------TEIL    <---------ANAC46 >ALFIN1       <---------MYB46(3)  <---------ANAC46    <---------YAB1 --------->ANAC58<---------MYB46(3)   atggagggctttagcagtggttagggttcgattcctggcgcagagctggagctgatgaagatagtgagggataagcattcatcagctgttgttgcttaag  8105500                    --------->ANAC58                  <---------DOF5.7(2)                *TSS--------->ANAC58               --------->YAB1              <---------YAB1              <---------TOE2(3)           --------->ICU4      ----------->GT1      <---------ZAT6--------->ZAT6   --------->HSFB2a(2)                  <-----------GT1                                            --   <---------HSFB2a(2)       >>>>>>>>>RAP2.2         ----------->TBP                               <- -->MYB52(1)--------->YAB1 <---------ARR11(3)<---------DAG2          <-----------GT1              --- --DOF2    <---------YAB1  --------->ARR11(3)<----------DOF2<------------CBF                  <------   ggcttctagagttattatggtaacgctaatatctaaattagtttacactttttctatatatgtattgaaattaacaaatttgaaaacaacatttcagtta  8105600                                                            <---------AHL20(2)                                                            <---------AHL20(1)                                                            --------->AHL20(2)                    ---                                                            --------->AHL20(1)                   ----                                                           --------->AHL20(2)                    ----                                                           <---------AHL20(2)                    <---                                                       <---------AHL20(2)                    --------                                                       --------->AHL20(2)  <---------AHL20(2)<-------                                                    <---------AHL20(2)  <---------AHL20(2)   <-------                                                   <---------AHL20(2)  --------->AHL20(2)    --------                                                   --------->AHL20(2)--------->TOE2(3)    --------->YAB1         ------------>CBF                      <---------AHL20(1)   <--------HAHB4       --------->ICU4 ------->AHL20(2)                              <---------AHL20(2)   --------->YAB1     --------->YAB1 --------AHL20(2)                              --------->AHL20(2)  <---------YAB1   --------->YAB1<-- ------>AHL20(2)        <---------AHL20(2)  <---------AHL20(2)   --------->YAB1   <---------YAB1 <--- ---MYB52(1)  ------------>CBF            <---------YAB1<---------AHL20(2) <---------ICU4<---------YAB1   tttaattcgtaaacaattcaatgtaataaatctacttattctctattattttatttattaattttatttatcattaaatatttcatgaataataataaat  8105700       ------->TEIL    --------->ANAC55(2) ------>AHL20(2) ----->AHL20(1) ----->AHL20(2)                                                        --------->ATHB12 ------AHL20(2)                                            --------->YAB1   <---------ANAC58      <-- ->AHL20(1)                                                <---------ICU4<---------WOX13(1)       --- --AHL20(2)                                     --------->AHL20(2)    <---------AHL20(2)          <-- --AHL20(1)                                     <---------AHL20(2)   <---------WOX13(1)        ------ ->AHL20(2)                                 <---------AHL20(2)  --------->TOE2(3)   ----------->GT1<- -------AHL20(2)                            --------->AHL20(2)<-----------GT1    ----------->RAV1(1) ------AHL20(1)        <---------YAB1 --------->AHL20(2)  --------->AHL20(2)<---------ANAC58---------   ttatttatgtatcactgatttagttattcttcttatacataaaaatttaaataaatgcaaataataacttaattgattgtttgcaacagtaatacagtaa  8105800                                                       <---------ANAC55(2)                                                       --------->ANAC58 -------AHL20(1)                                       --------->ANAC46 ------>AHL20(2)                                       --------->ANAC58                         <---- -------AHL20(2)                       --------->HSFB2a(2)                                 --------->YAB1 --->YAB1                      --------->ANAC55(2)     --------->ANAC55(2)                <---------ATHB51 --------AHL20(2)              <---------ANAC55(2)<---------ICU4 --------->HSFB2a(2)      <---------ATHB12 -->GT1                 <---------ANAC46          --------->YAB1 <---------HSFB2a(2)    --------->WOX13(1)   taaaattcaattttgtaaacaatttttcgtaaaacgtattactagaatcgaattatcacgaaattttctacaagactaaaattttaaaatcaattatgcg  8105900                                  <---------MYB46(3)                             <---------MYB52(1)                       --------->WOX13(1)                     <---------YAB1--------->At5g28300                                 <---------ANAC58 -------HVH21    <----------DOF2  ----------->GT1       <-------TEIL                   <---------ANAC58   tcaaaagtatatgttatctctttatcaatcccttggtggtaaatttgagaccatcagttacatttgagtaattctaagcatttgaaatttcttaccgatg  8106000  Previous    Next  AGI:  At4g14050.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G68930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63067.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16371.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8103640    to: 8105516    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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