Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 ----                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              <------                                                                           --------->At4g35610<------                                                                           <---------At4g35610-------                                                                       --------->REM1(2)     --------                                                                     --------->LBD16         <-------                                 --------->ANAC58                   <---------ANAC46       <------NtERF2                    ----------->HVH21                               <---------ANAC58      --------->LBD16                  --------->At4g35610      --------->CCA1(2)   ---------->DOF2           <---------ANAC46                  ----------->RAV1(2)   <---------YAB1      --------->ANAC58             --------->ETT(1)                <---------ALFIN1 --------->ANAC58           --------->ANAC58  --------->At4g35610<---          --------->At4g35610  ---------->DOF2   ------>ZmHOX2a(2)  <---------ANAC58    <---------LBD16 --->YAB1 <---------At4g35610 <---------ATHB12  <------ZmHOX2a(2)  <-----------------------TaNAC69(2)   taaccatgagtcaaatgaccacctgaaggcaaatcaagccccatgatacgatcgtgaggctgaagcaaagccgtgtaagcagcgaaatttgccggagatc  8049700                             --------->At4g35610      <---------At4g35610    <---------At4g35610      --------->At4g35610    <---------ZAT2    <---------RAP2.6(2)      --------->ZAT2 --------->ARR14(2)      --------->ANAC58 <---------ARR14(2)      --------->ANAC46 ------>LBD16            --------->ANAC58                                 --------->GLK1(2) ----->HSFB2a(2)       <---------ALFIN1                                  <---------ARR14(2) -ZmHOX2a(2)        --------->ANAC46                                     <---------ARR11(3) --->CCA1(2)       ------->GAMYB                                         --------->ARR14(2) -->ARR14(2)      --------->ANAC58                                       <---------GLK1(2) -->ARR11(3)      --------->ANAC46                       --------->ARR11(3)  <---------HSFB2a(2) ---ARR11(3)      --------->ANAC58                  <---------HSFB2a(2)  --------->ARR11(3) ---ARR14(2)    <---------DOF5.7(2)            <---------HSFB2a(1)     ----------->ARR10 -->AGP1      --------->DOF5.7(2)              <---------HSFC1(2)    ---------->DOF2 ->GLK1(1)   --------->TOE2(3)                 --------->HSFC1(2)--------->ANAC58                 <-- --GLK1(1)   --------->TOE1(3)              ---------->DOF2      --------->ANAC58 ------>ZmHOX2a(2) ------HSFB2a(2)---------->DOF2    <------ZmHOX2a(2)--------->HSFB2a(2)--------->ICU4             ---   cagaatacggctgaacattaacgccccacgctgctggatcacaatggaaagcttcgagagctcttgaacggcaaagattctcgatctcatcgatgaattc  8049800              <---------ICU4             <---------YAB1             --------->ICU4                         <---------ZAT18            <---------TOE2(3)                     <---------TOE1(3)         <------NtERF2           --------->YAB1                         <---------TOE2(3)       <---------RAP2.3(3)           --------->MYB52(1)                <------MYB83                 <---------ANAC46           <-----------GT1               <---------MYB46(3)               <---------DEAR3(1)          --------->ICU4                 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->LBD16          <---------LBD16<-------GAMYB              --------->RAP2.6(3)  <------     --------->ANAC55(2)   --------->ARR11(3)<---------MYB46(3)        ----------->HVH21      <------     --------->ANAC46      <---------ARR11(3)<------MYB46(1)           ----------->TGA1       -------  --------->TOE2(2)    <------ZmHOX2a(1) <-----------RAV1(1)   <---------ARR11(3)   ----------->GT1 -------MYB52(1)     --------->ANAC46 <---------ARR14(2)    --------->LBD16------>NtERF2   --------->GLK1(2) ------>DOF5.7(2)   <---------LBD16   --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   gttacctccgtaataacgattaccaggaataccttcggagtatttgttggttaaggcacttccgagagcttcgatgacggcgaaggaagtgaaattctcg  8049900                                                                   ------>ZmHOX2a(2)                                                           ------>ZmHOX2a(2)                                                          <---------GLK1(1)                                                          --------->GLK1(1)                                                         <---------AGP1                                                         <---------ARR11(3)                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                         --------->ARR11(3)                                                    <---------ANAC58                                       ------>ZmHOX2a(1)<---------CCA1(2)   <---------TGA1a                                       ===========================HOX2a_HOX2a                              --------->O2          <---------ANAC46  --------->ANAC46                              <---------O2--------->HSFB2a(2)     <---------GLK1(1)                             <------NtERF2<---------HSFB2a(2)    --------->ARR14(2)                            <---------RAP2.6(3)  <------MYB83<---------LBD16<---------O2                            ------>NtERF2<-----------------AGL1  <---------ARR11(3)                           --------->DEAR3(1)   --------->MYB59  <---------ARR14(2)        <--------- ---LBD16         --------->ANAC46     ===================================HOX2a_HOX2a      ---------- ---HSFB2a(2)    ------>ZmHOX2a(1) <-----------GT1  <---------ANAC58 <---------LBD16    <-----------GT1 -->HSFB2a(2)--------->ARR14(2)--------->HSFC1(2)<------MYB46(1) <---------AGP1      --------->ALFIN1   gaagcgataagttcgattcctcgacattgccgacgtttctccttctcgattaggtcgtggatctctggatctacggagacgagagaggtgttaccccatg  8050000                                                                          <------ZmHOX2a(2)                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   --------->CCA1(2)                                             ------>ZmHOX2a(2)    --------->ARR11(3)                                      ------>ZmHOX2a(2)           <---------ARR11(3)                                     <---------At4g35610          --------->ARR14(2)                                    --------->ARR14(2)            <---------ARR14(2)                                    <---------ARR14(2)            <---------AGP1                                    <---------AGP1                --------->AGP1                               <---------AtLEC2                  --------->GLK1(1) ------AGL15              <---------MYB46(3)<------ZmHOX2a(2)   ----------->ARR10        --------->ALFIN1 ----->AGL15     <----------DOF2    ------->TEIL  ---------->DOF2<---------GLK1(1)     <---------O2--   aagagactggttccatcttctttgtagattgttgaatggatctgagatcggagaaagagggagggagagatctgagatcagagagtgagaagtgggaaga  8050100                                                                                      <---------ANAC58                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                      --------->ALFIN1                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                  <---------ANAC55(1)                                                                                  <------MYB46(1)                                                                                  <------MYB83                                                                                 --------->MYB46(2)                                                                                 --------->MYB111(1)                                                                                <---------MYB55(1)                                                                               <---------MYB52(1)                                                                              <-------GAMYB             ---------->DOF2                                                 <---------MYB46(3)       <------MYB83                                                          <------MYB83 <---------AtMYB61       ----------->GT1                                                       <------MYB46(1)       <---------ANAC46                      --------->GLK1(1)            <-------GAMYB --------->ALFIN1       <------MYB46(1)                      --------->ARR14(2)           --------->MYB111(2)      <------MYB83                          <---------ARR14(2)           --------->MYB46(2)    <---------MYB52(1)                   <---------ANAC55(2)             --------->MYB52(2)    <--------P                           --------->ANAC55(2)             --------->MYB111(1)   <-----   <-------GAMYB                         <---------TOE2(3)  --------------->AGL15<---------AtMYB61  <---------MYB46(3)                     <---------ANAC46   <---------------AGL15--------->MYB111(2)  --------->MYB55(2)                    <---------LBD16    <-----------------AGL3--------->MYB59<----  <---------DEAR3(2)             --------->At5g28300       <-----------------AGL2--------->MYB52(2) *TSS <------MYB46(1)           <---------ANAC46    ------>ZmHOX2a(1)    <---------MYB46(3)    <----- <---------DEAR3(1)             ----------->GT1  ---------->ID1      <---------ZAT6 --------->ALFIN1 <---------RAP2.6(2)----------->GT1    --------->MYB52(1)  ========================================== ---------->AtMYB77<------ZmHOX2a(1)   <-----------GT1 <----------DOF2   --------->MYB55(2)  <-------   gaggcggttgggtttaaaagaggagtagaaaatggggtaaattacggatttgtcctcctttgctaattttggtgttagttggttaggtgtgtgtggtagg  8050200                                                                --------->YAB1                                                                --------->ATHB12                                                               <---------YAB1                                                             <---------ICU4                                                             --------->YAB1                                                             -------->HAHB4                                                         --------->AHL20(1)                                                         <---------AHL20(1)                                                         --------->AHL20(2)                                     --------------->AGL15  <---------ATHB51 -MYB83                    <-----------GT1               <---------AHL20(2) --ZmHOX2a(1)              <---------At5g28300      <---------MYB52(1) -MYB46(1)                <-----------GT1          --------->TOE2(3)    ----------->GT1 ====================================================MADS_MADS --------->ICU4   ---------->DOF2   <-- -P               <-----------GT1   ----------------->AGL3  --------->ICU4   <---------ANAC55(2)  <--   agaacaagcttagtgtgttttgactattttaccctcttaccaatatttgtttcccttaattaattatgattagatggatacttaaggcccaattgcattt  8050300         <------MYB83         <------MYB46(1)         <---------ANAC46         ----------->GT1        <---------MYB46(3)        --------->MYB59                       --------->bZIP60(1)               ----------->GT1       <---------ANAC46            <---------AHL20(2)                          --------->DAG2      --    <-----------RAV1(1)           <---------YAB1                           --------->AHL20(2)      <-    <---------ANAC46             <---------AHL20(2)               <---------MYB46(3)               -- -------TOE1(3)                <---------YAB1 <---------bZIP60(1) <------MYB46(1) --------->AHL20(2)< -------TOE2(3)        <---------LBD16 <---------AHL20(2)         <------MYB83---------->DOF2   -----   aaggttgtgttgggtaaatctctctctcggattatttttatttttttgacatcagaaattgaatttgttggtagaaaataaaaagtaattacaaacaaaa  8050400                                                                                                <----                                                                                              =======                                                                        --------->DAG2      ---------                                                                       ---------->DOF2      <--------                                                                  ----------->GT1    <---------ZAT18                                                              <---------YAB1         --------->ZAT18 ------->AHL20(1)                                            --------->AHL20(2)      --------->PCF2 --------AHL20(1)                                            <---------AHL20(2)      <---------PCF5 ------->AHL20(2)                                           --------->AHL20(2)       --------->PCF5 ---------AHL20(2)                                          --------->YAB1           <---------PCF2 ---->AHL20(2)                  ----------->GT1         <------ZmHOX2a(1)     <----------DOF2 ------>ZmHOX2a(2)   atataatctattgattccaaaaaaaaaaaaaaaactgtataaatccctataaatcggaggaattaaaattggaaaaagggctttgagggcccatgatctt  8050500                                    --------->YAB1     --------->ZAT14              <---------AHL20(2)     <---------ZAT14              --------->AHL20(2)   <---------At4g35610      <-----------GT1   --------->At4g35610   <---------ICU4                                                            <- -----YAB1            ----------->GT1                                                              -- ===========================HOX2a_HOX2a                           <-----------GT1                ---- >ARR11(3)           <------ZmHOX2a(1) --------->YAB1     --------->YAB1                      ------- -ARR11(3)        --------->CCA1(2)<---------YAB1        <---------YAB1                  <---------SPL7   gattcagcccagtgttttagataggagtaattacattttaataagaaactctatagtttttcatagtttaacctttcaaaactcaaatggtcgtacatct  8050600  Previous    Next  AGI:  At4g13930.1    Description:  SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase. similar to SHM5 (SERINE HYDROXYMETHYLTRANSFERASE 5), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT4G13890.1); similar to unknown [Populus trichocarpa] (GB:ABK94226.1); similar to serine hydroxymethyltransferase [Populus tremuloides] (GB:ABO61376.1); similar to unknown [Populus trichocarpa] (GB:ABK92558.1); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region, subdomain 1; (InterPro:IPR015421); contains InterPro domain Gl Range:  from: 8047687    to: 8050101    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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