Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------RAP2.6(2)               --------->YAB1   --------->ANAC46               --------->TOE2(3)--------->ANAC55(2)             --------->GLK1(2)  <---------ANAC55(2)             <---------ARR11(3)<---------LBD16     <---------YAB1            --------->RAP2.6(3)     <----------ID1    ------>ZmHOX2a(1)     <---------ANAC55(2)  --------->AHL20(2)                 --------->ARR11(3) ----->ANAC46--------->ARR11(3)<---------At5g28300           <---------ARR11(3)                  <--- -->GAMYB   --------->RVE1(1) <-----------GT1            ---------->DOF2                        <---- ----ALFIN1 --------->CCA1(1) --------->MYB52(1)         XXXXXXXXXXXXXXXXXXXXXXX>MIR163     <--------   cactattacgaaaaaaatcttaatcctataaattacggcatgaacagattaatacattgtaaagaacttggaattcgaatcaaatggtgagacaactaat  8025200                                                       <---------LBD16                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                    <---------GLK1(1)                                                    --------->GLK1(1)                              <-             --------->ANAC58                      --------->ARR11(3)                              -- ------AHL20(2)   ---------->DOF2                  <---------ARR11(3)                   ------->GAMYB -----ATHB12 --------->ANAC58    ----------->GT1   <---------AGP1                  <------NtERF2 <--- -MYB52(2) ---------->DOF2      ----------->GT1---------->DOF2           <-------TEIL--------->MYB52(1)   gaattgacattttcaaagcaaaaagaagttgaaattggaaaatagaacagaaagatctctgggatttgaagaagtttcatacctcggcaacgggagagag  8025300                                                      --------->ATHB51                                                      --------->ATHB12                                                     <---------AHL20(2)                                                     <---------YAB1                                                   <---------RVE1(1)                                                  <---------ARR14(2)             --------->O2                                                  --------->ARR14(2)         ------>ZmHOX2a(1)                                               <---------ANAC46            ------>ZmHOX2a(2)             <---------REM1(1)                --------->ATERF1(1)         <------ZmHOX2a(2)            --------->ARR11(3)                <------NtERF2               =============HOX2a_HOX2a  ----------->GT1                            ------>NtERF2<---------LBD16--------->ARR14(2)         < --------GLK1(1)                            --------->ETT(2)             <---------ARR14(2)       <-- ------->GLK1(1)                            ----------->HVH21 --------->ARR14(2) <---------O2   <---- ---ZmHOX2a(1)          --------->ALFIN1    <---------DEAR3(1)<---------ARR14(2)------>ZmHOX2a(1)<---   gaaatcgtttataagatgtagaagaagtgatggaacgaggcaattggcgacggatattattggggatttgatttggatcctcctcgtggccatggacgga  8025400                      <---------At4g35610                   --------->At4g35610                   <---------ZAT2                   --------->ZAT2                                            --------->ETT(2)                   <---------At4g35610                                      <------NtERF2          --------->SPL7 --------->At4g35610                              <---------ANAC58        <---------SPL7--------->At4g35610                                 <---------ANAC58      <---------------AtSPL3<------ZmHOX2a(1)                             <---------ANAC46     <---------ANAC46 --------->ZAT2                            <---------HSFB2a(1)     <---------ANAC58 <---------ZAT2                            <---------At4g35610     <---------ANAC58----------->RAV1(1)    --------->MYB52(1)  --------->At4g35610     <------------------SPL14               <---------ARR14(2)  --------->HSFB2a(1)              ---- ---------REM1(1)<------NtERF2           >>>>>>>>>TBF1          <---------ZAT2                   ==== -----GAMYB    <---------DEAR3(1)     >>>>>>>>>TBF1             <---------HSFC1(2)        --------->ARR11(3) -----TOE2(2)<-----------HVH21     >>>>>>>>>TBF1             <------ZmHOX2a(1)            <---------ARR11(3) ------MYB46(3)--------->ETT(1) >>>>>>>>>TBF1   ----------->GT1 --------->HSFC1(2)      ----------->ARR10   ggttgtagcttgtacggtcggagcagcagaggaagaagaagaagaagaacgggagaaattgtaggaagcttcgatggcgtcgatagcgagaagctcttcc  8025500                                                                                             <-------                                                                                           <------NtERF2                                                                                          ------>NtERF2                                                                                        <------NtERF2                                                                                        --------->ATERF1(1)                                                                                       <---------RAP2.3(1)                                                                                       <---------DEAR3(2)                                                                                       <---------ATERF1(1)                <------ZmHOX2a(2)                                     <----------DOF2  ------>NtERF2            <------NtERF2                                             =======================bZIP_DOF          <---------DEAR3(1)                                      <---------TOE2(3)   <---------DEAR3(1)          --------->DEAR3(1)                                    <---------AHL20(2)  <-----------HVH21          <---------ANAC46                                     --------->AHL20(2)  <---------O2        <-----------HVH21                                   --------->ICU4         <---------TGA1a   ---------->DOF2       <---------TOE2(3)                --------->YAB1           --------->O2------ -->ZmHOX2a(1) <---------ARR14(2)                        --------->AHL20(2)        ================== ======================HOX2a_HOX2a    <----------DOF2--------->AHL20(2)  *TSS      --------->TGA1a   tctgtaaaagcgtcgtcgatccaatttgacgatgacatttcttttactgaaacaaaaaaataaaaattaatgctttggacgagtctcgtcggccccttta  8025600                                                                                    <-----------GT1                                                      <---------ANAC46       --------->ANAC58                                        <---------ZAT14                      --------->ANAC58                                  <---------ALFIN1    <---------ANAC58  ----------->HVH21      <------------CBF    <-----------GT1 ------------>CBF            --------->LBD16 ---DOF2                 <-----------GT1--------->ZAT14         <------------CBF<---------DAG2 --->AHL20(2)     <---------AHL20(2)  --------------->AtSPL8  <---------AHL20(2)<----------DOF2    -- ===bZIP_DOF      --------->AHL20(2)<---------ALFIN1  <---------ANAC58--------->ANAC46           <---   aatgtttgtattgtttgtttttaattttaaacgttcccacactgtacaatatagttgtgtgttttaaattgcccgagacacgctttatacaatttttgta  8025700                <---------bZIP60(1)                --------->O2                --------->bZIP60(1)                --------->ANAC58                <---------ANAC55(2)                --------->ANAC55(1)                --------->ANAC55(2)                --------->ANAC46                                <------------CBF                --------->ANAC58 <---------ANAC58      <-----------HVH21           <---------ICU4        <---------ANAC58    <---------TOE2(2)                <------ZmHOX2a(2)      <---------YAB1  --------->YAB1                 <---------TOE1(2)               <---------ARR11(3)   <---------YAB1     --------->TOE2(3)    <---------YAB1  <---------TOE1(3)         --------->ARR11(3) ------->ARR11(3)     --------->TOE1(3) <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)--------->MYB52(1) ------YAB1--------->YAB1   --------->TOE2(3)<------------CBF --------->ARR11(3)------->TEIL        *TSS   tgattttgattattcatcacgtaaccataacctttgcttcacattagaattgtcccatgttagggatattggcataacgatgtatcagatcatgtcgatg  8025800                                                     <----------DOF2                                                  <---------ALFIN1                                                --------->AtMYB61                                                <---------ALFIN1                  ------>ZmHOX2a(1)                                                ------->GAMYB                 --------->ARR14(2)                 --------->HSFB2a(2)           --------->MYB46(3)         --------->MYB46(3)            <---------ATHB12                  -------->P                 --------->ANAC58     ------>MYB83<---------HSFB2a(2)        --------->MYB46(3)           --------->ANAC58         ---     ------>MYB46(1)<---------GLK1(2)     --------->ANAC46               -------->P       <---------YAB1   agaaaccaaattcaatctttcagaaacttaaacccatcccatacaaacaaccacacttttgttgacaaatggagcaaccaattcctcttattttcattca  8025900                                                                               --------->ICU4                                                                   --------->ANAC58                                                                   --------->ANAC58                                                                   --------->ANAC46      <---------YAB1                                      --------->WRKY12  --------->ETT(2)       <---------YAB1          <----------DOF2             --------->WRKY45  <---------ETT(2)     --------->YAB1    ------  --------->ZAT14                     --------->WRKY38(1)        <---------ALFIN1 <---------YAB1 ---- ------>ZAT6                        <----------DOF2 <------------AtMYB77    --------->ICU4   <-------   acagtagacactctttcattttcaacaaaaaaacactcctttgactaagtagaaactgtcgatggccacacgcgaaaaatgatgatgaattcttataaca  8026000                                                                                       <------ZmHOX2a(1)                                                                                    <-----------RAV1(2)                                       --------->ICU4           <---------LBD16     <---------HSFB2a(2)                                ------>ZmHOX2a(2)              <-----------RAV1(1)  <---------LBD16                               <------ZmHOX2a(2)   <---------RVE1(1)                --------->HSFB2a(2)                              --------->ARR11(3)   --------->GLK1(1)         <---------YAB1                              <---------ARR14(2)  --------->ARR11(3)        <-----------GT1       <<<   <---------ALFIN1           <---------AGP1      <---------ARR11(3)       --------->YAB1         ---   ----------->RAV1(1)        --------->GLK1(2)   <---------GLK1(2)       --------->ICU4      <------ ------>ZmHOX2a(1)            --------->ARR14(2)  --------->ARR14(2)    --------->WOX13(1) <---------ANAC58 =====================================HOX2a_HOX2a <---------ARR14(2) --------->ANAC58  ============== --->ZAT6                     <---------ARR11(3)----------->ARR10    --------->ANAC58--------->LBD16- ----->ANAC46      <-----------HVH21 --------->WOX13(1)<---------AHL20(2) <---------ATHB12 <---------ANAC58 ----GT1 <---------REM1(1) <---------TOE1(2) <-----------HVH21 <---------ANAC46 ------>ZmHOX2a(1) ---   ctcctccacagatgtagtaagtgtcatccaaggatctagcaattaagagtcagatattcaattttctgtggaagcaattatccttcccaggagacttgtc  8026100  Previous    Next  AGI:  At4g13870.1    Description:  WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3'-5' exonuclease/ nucleic acid binding / protein binding. similar to 3'-5' exonuclease-related [Arabidopsis thaliana] (TAIR:AT4G13885.1); similar to PREDICTED: similar to FFA-1 protein [Danio rerio] (GB:XP_697980.2); similar to Os04g0129200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052089.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain 3' (InterPro:IPR002562) Range:  from: 8023315    to: 8025573    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g13880.1    Description:  leucine-rich repeat family protein. similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13810.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13820.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41175.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype (InterPro Range:  from: 8025800    to: 8028610    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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