Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ANAC46                                                               ======================================                                                               <---------ANAC46     --------->ANAC58                                           ----------->GT1     <---------ANAC58     --------->ANAC58             <---------LBD16        --------->ANAC58           <---------ANAC58  --------->ZAT18    <             --------->TOE1(2)      --------->ANAC58           <---------TGA1a   <---------ZAT18  ---           ------->TEIL             --------->ANAC46   ------>ZmHOX2a(1)  --------->ANAC46        <--           --------->GLK1(2)      <---------ALFIN1    --------->TOE2(3) <---------ALFIN1         <---          --------->ARR11(3)     <---------ZAT18    <---------YAB1  <-----------HVH21          <-----      ---------->DOF2        ------>ZmHOX2a(1)    --------->YAB1 <---------ANAC46--------->ZAT14<----   taaactcaaaaagaacctggaaatagcaatcctcgcacactcaagaagaaaatcatccttatcagtcgtgtgtcacacactagtccacacaatgtttgca  7998100            <---------ICU4         --------->WOX13(1)  --------->LBD16 <---------ANAC58 <---------ANAC58                 --------->ARR11(3) <---------ANAC46                 --------->ARR14(2) ======bZIP_DOF                   <---------GLK1(2) ---------LBD16       <---------AHL20(2)                                                           -- ------>ARR14(2)      <---------AHL20(1)          ----------->GT1                                  <- -------ARR14(2)      --------->ARR11(3)          --------->ANAC58                                --- ------GLK1(1)        --------->AHL20(1)          --------->ANAC58            ---------->DOF2 <------ ----AtLEC2 --------------->AtSPL8<---------ARR14(2)             <---------YAB1            <---------GLK1(1) ------DOF2 --------->YAB1   ----------->RAV1(1)  --------->ANAC46   --------->YAB1      --------->ATHB12   tttccgtagattaatcagtactaaaatattgcaacagattttgaaaaatgaaacgcaaaattagattacgatgacaatttcaaagctaaattgatttctg  7998200       <---------HSFB2a(2)       --------->HSFB2a(2)       --------->HSFC1(1)       <---------HSFC1(1)       >>>>>>>ZML2 --------->RAV1(2)                --------->ANAC58 --------At4g35610  --------->YAB1--------->ANAC55(2) ---->TEIL<<<<<<<ZML2             --------->ANAC58                                          <------ZmHOX2a(1) -----------AGL2   <-------TEIL   --------->ANAC46 --------->At4g35610              ---------->DOF2<-   catctggttctagaacagaaattcataaacgaacacacgcgattacatgtattagcagagaagacgaagacatgaaatgatacagataaagagaggagag  7998300                                                --------->DAG2                                               ---------->DOF2                                               --------->SPL7                                             <---------SPL7                                 ---------                                            --------->ANAC55(2)                             ---------                                            <---------ANAC55(2)                         <---------ARR14(2)                                            <---------ANAC46                <-----------GT1----------                                            --------->bZIP60(1)           <-----------GT1 ------>ZmHOX2a(2)                                           <---------TOE2(3)          <---------AHL20(1)--------->ARR14(2)                                   <---------HSFB2a(1)         --------->ATHB12     <---------LBD16                                   --------->HSFB2a(1)         <---------MYB46(3)   --------->LBD16     <-----------GT1    --------->LBD16    <---------------AtSPL3--------->ICU4<----------DOF2 ------TEIL      <---------YAB1 <------ZmHOX2a(1)   ---------->DOF2----------->GT1 <---------LBD16---   attcaaattacatccgatgatgtttccgagatgaggaacgttgttgacgtaaggcaaagcactggtgattagtatatttctctttccagggatcggtaac  7998400     <---------At4g35610   <---------DEAR3(1)  <---------At4g35610  <---------AtLEC2                                 <-----------HVH21 >DOF5.7(2)    --------->ATERF1(1)                               <---------HSFB2a(2) >At5g28300    <------NtERF2                             <---------TOE1(3) ->GT1        ------>NtERF2 <---------ANAC46  ---------->DOF2    --------->HSFB2a(2)    ---------->DOF2 ------>ALFIN1<---------RAP2.6(3) <----------ID1         <---------TOE2(3)           <------ZmHOX2a(1)   ttggggctgctcttgccgtcgtcttccatggcgaaaacaacaagaccacaaagctaattagggttttcgcgaagagtcagagacagaggagaaagacgaa  7998500                                                                  --------->ARR14(1)                                                                  --------->CCA1(2)                                                                 --------->ARR11(1)                                                                 <---------AGP1                                                         <------NtERF2                                                      ------>NtERF2  ----------->GT1                                                      <------NtERF2<---------LBD16                                                      <---------ATERF1(1)                                                      --------->ATERF1(1)                                                     --------->RAP2.6(2)                                                     <---------ATERF1(1)                                                     <---------RAP2.3(1)                                                     ------>NtERF2<------ZmHOX2a(2)                                                    <---------DEAR3(1)                                                    --------->DEAR3(1)    <---------TOE1(3)                                                    <---------RAP2.6(2)   <---------TOE2(3)                                                   --------->ATERF1(1) <---------MYB52(1)                                                  ------->GAMYB  <---------ARR14(2)                                                  <---------RAP2.3(1)--------->LBD16            ---------->DOF2                  <---------MYB52(2)  --------->AGP1           *TSS             --------->At4g35610 <---------At5g28300------>ZmHOX2a(2)     <---------At4g35610    <---------At4g35610--------->MYB52(1)--------->ARR11(3)     --------->ZAT2  --------->ARR11(3)  --------->TOE2(2)       --------->ARR14(2)             <----     --------->At4g35610<----------DOF2  --------->TOE2(3)     ----------->ARR10                <----    --------->GLK1(2)<---------ARR11(3)  --------->TOE1(2)<-----------RAV1(2)             ---------->DOF2   tcagagaagctgagaaaagagaagctctttagctgatggtaaacctaagtaacggcggcctcagatagatccggttaagtttagaccagacagaaagttg  7998600                                           ------>ZmHOX2a(2)                                         --------->ARR11(3)                                         <---------ARR11(3)                                   <---------ARR11(3)                                   --------->ARR11(3)                                   <---------ARR14(3)                                   <---------ARR14(2)                                   <---------AHL20(1)       --------->LBD16             --------->ARR14(3)                                           <----     <---------LBD16               --------->ARR14(2)                   --------->GLK1(2)       -----  <----------DOF2                  --------->AHL20(1)                  <---------GLK1(2)      <------  <---------DAG2                 --------->ANAC58                    --------->LBD16          ------- --MYB83                         --------->ANAC58                  <---------LBD16     <---------YAB1 --MYB46(1) --------->YAB1     <---------AtLEC2                --------->AHL20(2)  <----------DOF2   gtcactttccggtttgataactgaattgcatttgcaagatattgatcttactggtatggatggaattaaaccggaatctaaatagctttactatagttta  7998700     <---------YAB1   -------->ATHB1                         <---------AHL20(2)   <--------HAHB4                        <---------AHL20(2)                                  ------>ZmHOX2a(1)   --------->ATHB51                     <---------AHL20(2)                               <-------PIF5   <---------ICU4             ----------->GT1                                           --------->ANAC46  --------->ICU4             --------->DAG2            <---------YAB1                   --------->bZIP60(2) -----ANAC46                ---------->DOF2     <------ZmHOX2a(1)                       --------->ANAC58 ------>GT1             <---------TOE2(3)--------->AHL20(2)                             --------->ANAC58 ---ZAT14              ---------->DOF2 --------->YAB1<-----------GT1                  <---------ALFIN1 -->ZAT14  <----------DOF2  <---------ZAT14   --------->MYB59          --------->AHL20(2)------->PIF5   gtgaattattaaacttttgtgaaactaaagtaaagtgactatattaattaggaaattaccattaacaaaaaaaaaaaatacaacatgaccacgtcctata  7998800                                                           <---------GLK1(2)                                                  <-------PIF5                                                  ------->PIF5                                                 --------->bZIP60(2)                           <<<<<<                                                 --------->ANAC58                            <-------                            <----------DOF2      --------->ANAC46         ----------->HVH21 <--------                     <---------ICU4              --------->ANAC58       <------MYB46(1) =============                    <---------ATHB12           <---------ALFIN1  <----------DOF2        <----------DOF2                ------>ZmHOX2a(1)   <-----------GT1   ------>ZmHOX2a(1) <------MYB83<---------CCA1(2)   ttacatggaaactttctcctaaatcattttcttttgttttacaacatgaccacgtcctatagaaactctttgctaggtgactaggtctatcttttatgtt  7998900                    --------->WOX13(1)                --------->TGA1a                ==============================bZIP_DOF                --------->O2                <---------O2              <---------ALFIN1                                                                -------   --------->MYB52(1)    --------->At4g35610<----------DOF2                        <---------AHL20(2) <<<MYB98   <---------At5g28300             <---------DAG2                        --------->YAB1 --YAB1 --------->ARR14(2)              --------->ZAT18                          <---------YAB1------ -TOE2(3)  <-----------GT1              <---------ZAT18<-----------RAV1(1)    <---------MYB52(1) =========================bZIP_DOF ---------->DOF2--------->YAB1        <----------DOF2     <--------   aaacaaaacagatttaccacgtctatcagcccaaacttgaagcgaacttttttcatattgttggacttcttcatctttctgttattatatcatttcacaa  7999000  Previous    Next  AGI:  At4g13780.1    Description:  methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative. Identical to Probable methionyl-tRNA synthetase [Arabidopsis Thaliana] (GB:Q9SVN5); similar to tRNA-binding region domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50078.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65767.1); similar to methionyl-tRNA synthetase [Oryza sativa] (GB:AAC99620.1); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain tRNA-binding region; (InterPro:IPR00254 Range:  from: 7993151    to: 7998511    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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