Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------REM1(1)                                                  <---------MYB46(3)                               --------->ANAC58 <---------ANAC58                               --------->ANAC58 <---------ANAC46                             <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxsmallRNA(le3)     --------->YAB1     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       ---  <----------DOF2    --------->ANAC55(2)  --------->ATHB12                                 <-------TEIL ->TOE2(3)           <---------ANAC55(2) <---------YAB1                          <---------ANAC55(2) ->TOE1(3)  <---------YAB1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->ANAC55(2)- --MYB59    <---------TOE2(3)--------->MYB46(3) <---------ANAC58            ----------->HVH21     ---   aatactttgatattaagactgataagtatcaacaagcgaagttttgatttgcttgttgaagctagtctcggacttcaaatgacacttgatatgttcatac  7884100                                                                                    <------ZmHOX2a(2)                                                                                    <---------RVE1(1)                                                                                   --------->AGP1                                                                                   <---------ARR14(2)                                                                                   --------->ARR11(3)                                                                                   --------->ARR14(2)                                                                                   --------->ARR14(3)                                                                                   <---------ARR14(3)                                                                                   <---------ARR11(3)                                ---------->DOF2                                  ----------->ARR10                             --------->ANAC58                       <---------KAN4(2)                  --------------->AGL15                             --------->GLK1(2)------>ZmHOX2a(2)               <---------ARR11(3)                                   --------->ARR14(2)     <---------ANAC58            >>>>>>>>>TBF1    --------->ANAC58                       <---------ARR14(2)   <-----------GT1 ------>ANAC55(1) <---------------AGL15                             ---------->TaMYB80<----------DOF2 ---------->HVH21<-----------------AGL3                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>ANAC46 --------->ARR11(3)   <-----------------------TaNAC69(2)       --------->YAB1<---------ANAC58   atgtaacatgtgaagaagaacttattttggaacccaaagacatgaatagtttgaaaacctttctcatgagaatatgcaatgttaagatcttttacttgtc  7884200                                          <---------YAB1                xxxxxxxxxxxxxxxx>smallRNA(i)    ------------>CBF               xxxxxxxxxxxxxxxx>smallRNA(i) <------------CBF         ----------->GT1             <-----------HVH21     <---------TOE1(3)             --------->ARR11(3)           -------       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ANAC58     --------->ANAC58              <---------TOE2(3)           <---------YAB1              --------->ANAC46     --------->ANAC58    <----------DOF2 ------------>CBF    --------->YAB1                --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(s)    ---------->DOF2           <---------ZAT6               <-----------GT1   ttatgacactctataggtcagtcccatcttttttgttaaagtttacaattgacaattagttagtgatgatatagttaacttggtttttgtttcacgaact  7884300                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                  <--                                                                                                -----                                                                                                <----                                                        =============================================                                                        <---------------AGL15                   -----                                                        =============================================                                                        --------------->AGL15                   <----                                             <-----------GT1                                   <xxxxx                                           <---------MYB52(1)                           --------->ANAC46             ------------>CBF    ----------->RAV1(2)   ----------------->AGL3      <-----------ARR10<            <-----------GT1     -------->P<---------At4g35610                      <---------ARR11(1)     <---------ZAT14           ------->GAMYB--------->ZAT14                        <---------ARR14(2) --------->ATHB12             <---------MYB111(2)      ============================================== >TEIL ----------->GT1        --------->MYB46(3)     <-----------GT1               --------->ARR14(2)   taatgactgaagttaaacaatacaggtattcaacaacctgattcagttaactattttgccatgtatagagagggaatcactgccaaatctactcaagaat  7884400             <---------HSFB2a(1)           <-----------GT1       --------->HSFB2a(2)       <---------HSFB2a(2)    --------->GLK1(2)    --------->ARR14(2)    <---------ARR11(1)    <---------ARR14(2) --------------->AGL15 <---------------AGL15 ---------------->AG ---------------->AGL3 ---------------->AGL2 ---------------->AGL1 -----------------AGL2 ---------GT1--------->HSFB2a(1) ---->HSFC1(2)                                                 <---------ARR11(3) -----HSFC1(2)                                               <---------YAB1   <---------AHL20(2) ================MADS_MADS                                   --------->ICU4   --------->AHL20(2) ---->HSFB2a(1)                                         ------->GAMYB         <---------AHL20(1) =================MADS_MADS                             ----------->HVH21     --------->AHL20(1) -----HSFB2a(1)                       <---------GLK1(2)<---------MYB52(2)  --------->YAB1 xxxxxxxxxxxsmallRNA(i)           <-------TEIL        --------->At4g35610--------->At5g28300 -----------------AGL3    ----------->GT1           --------->MYB46(3)  ----------->GT1 =================MADS_MADS   >>>>>>>>>MYB98      <-----------GT1  <-----------GT1                 <-   tttccaaatctagaaaccttcttctatgaagtaacatacacattcttgatattaacaactgacatgattttacacagtaataaattttgaaacggtctca  7884500                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <---------KAN4(2)                        ---------->TaMYB80                     --------->ANAC58                                                  <---------ANAC46                     --------->ANAC58                                               --------->ALFIN1            <---------ANAC46              --------->ETT(2)                       <-----------RAV1(1)            <---------ANAC58              <---------ETT(2)                       <---------YAB1            <---------ANAC58    ---------->DOF2           <----------DOF2     <---------YAB1  <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------ANAC58     --------->ICU4 --------AHL20(2)----------->RAV1(1)   --------->ALFIN1  <---------ANAC58  <---------YAB1   ttttatgtttcatggtgtgcaacacgaatatactaaaagatgtgtcgacgaagataagtgcttttgaaaatgttcggatgattatggtggagggagagat  7884600                                             --------->ZAT14                                         --------->ZAT6   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       --------->MYB52(1)<-----------GT1       <------ZmHOX2a(1)         <---------ANAC58      <----------DOF2                            <--  --------->YAB1     <---------------AGL15   <---------ZAT18                                  -------  --------->ATHB12   --------------->AGL15   <---------ZAT14                               <---------TOE2(3) <---------YAB1<----------DOF2   <---------ANAC58<---------ICU4   <-----------RAV1(1)--------->AHL20(2)   ggtatgataggagaagtcttttgctcatagaagtagagtgctaacagttcacaatgactttacaatctatgtggctccttgaaacaataaactatggatg  7884700                                         <---------ARR11(3)                                         --------->AHL20(1)                                         --------->ARR11(3)                 ------>MYB83                                         <-----------ARR10                  ------>MYB46(1)                                        --------->RVE1(1)            <-----------HVH21                            <------ZmHOX2a(1)                     --------->TGA1a                --------->YAB1          --------->CCA1(1)         --------->O2 <-----------GT1     <- -----TEIL    --------->GLK1(2)--------->ICU4       --------->ICU4<---------TGA1a       --------->ANAC46 >TEIL--------->MYB52(1)  <---------TOE2(3)--------->TOE2(3)      <---------O2 --------->YAB1  <-----   tgcataactaatggacaatcttcatatttaggaatgactaaaatatcttaactaatgcttaaacactcatgtgtcaccaaataacaatacatggaacatg  7884800      --------->YAB1      <---------ICU4            <---------TOE2(2)     <---------ATHB51           <---------TOE1(2)           --------->MYB52(1)     --------->ICU4          <---------DEAR3(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <     <---------ATHB12      <-----------HVH21     <---------HSFB2a(2)                          <------ --------ZAT6      --------->YAB1             <---------ARR14(2)                      ----------->GT1 ----YAB1 --------->ARR11(3) <---------MYB46(3)  --------->HSFB2a(2)        <----------DOF2  <-------   agtgtcaataatgaccttgtattgtaatgggtcgctggtttagttgaagttccagtagcacataccgaaactacattccttttttatggagtaattctgt  7884900            <---------TOE2(3)            <---------TOE1(3)    <---------RVE1(1)    <---------CCA1(1)   --------->ARR11(3)                                                                    <---------AHL20(2)   <---------ARR11(3)                                                               <---------YAB1  <------ZmHOX2a(1)                                             <---------MYB59   --------->YAB1 ---------TOE2(3)                                         --------->ANAC58      xxxxxxxxxxxxxxxxxxxxx ---------AGL15                                           --------->ANAC58   <-----------GT1 ----------AGL2                 <----------ID1     --------->YAB1     ----------->GT1    --------->AHL20(2)   tttaggatatttttagggtttttggattttgtataagacaaaaaaaaacacaaacacaataagctacttaactagaaaataacatcatcatataatttga  7885000  Previous    Next  AGI:  At4g13570.1    Description:  HTA4; DNA binding. Identical to Putative histone H2A.8 [Arabidopsis Thaliana] (GB:Q9T0H7); similar to HTA8, DNA binding [Arabidopsis thaliana] (TAIR:AT2G38810.2); similar to HTA11, DNA binding [Arabidopsis thaliana] (TAIR:AT3G54560.1); similar to HTA8, DNA binding [Arabidopsis thaliana] (TAIR:AT2G38810.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO22612.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 7884512    to: 7885660    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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