Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ------>MYB83      ------>MYB46(1)    <---------MYB111(1)    <---------MYB46(2)    <---------------AGL15    --------------->AGL15    <---------MYB59   ----------------->AGL2   <-----------------AGL2              --------->MYB52(1)                        --------->YAB1   ----------------->AGL1             ------>ZmHOX2a(1)                          <---------ICU4   ----------------->AGL3           --------->YAB1                              --------->ICU4   <-----------------AGL1         <---------ARR14(2)                            <---------ATHB12   ----------------->AG           --------->ARR14(2)                       --------->ANAC58   <-----------------AG           --------->GLK1(2)                        --------->ANAC46   <-----------------AGL3        --------->GLK1(1)                         --------->ANAC58 -------------AtSPL3             <---------GLK1(1)               <---------TOE2(3) -------------AtSPL8         --------->HSFB2a(2)   <---------ZAT18     --------->ANAC58 ------------>AtSPL8        <---------LBD16        --------->ZAT18    --------->DAG2 ->CCA1(2)               <---------GLK1(1)--------->YAB1---------->DOF2--------->ANAC58 >ARR11(3)        ------->TEIL--------->LBD16  <---------AtMYB61 <---------TOE1(3) <---------YAB1 -ARR11(3)   <---------AtLEC2<---------HSFB2a(2)<---------MYB46(3)   ---------->DOF2  ------->TEIL   agagtacctaatttggcatgaagcttgaattctgggaatcctaatggtgatggtggacaaaagaattgaggtaaagcaagcaatgatgaatatgaagaag  7857800                                                              ------>NtERF2                                                           <---------At4g35610                                                      --------->HSFC1(2)                        -----                                                      --------->HSFB2a(1)                       <----                        <-----------RAV1(1)           <---------HSFB2a(1)              <---------YAB1           <------ZmHOX2a(1)              >>>>>>>>>TBF1    --------->At4g35610      ------->TEIL<----         <---------TOE2(3)             >>>>>>>>>TBF1  <---------HSFC1(2) --------->MYB46(3)     -----   atgatgaagttgaggaatcactagccctgtggctaaacgaagaagaagaaattcgaaatttcgctgccatttccaacaactatatggatgtgatagaata  7857900                                                                          <---------CCA1(2)                                                                      <---------ARR11(3)                                                                      <-----------ARR10<---------AHL20(1)       <---------AHL20(2)                                             --------->ARR11(3)       --------->AHL20(2)                                             --------->ARR14(2)       <---------AHL20(1)                            <---------AHL20(2) ------>ZmHOX2a(2) <-----------GT1                                  --------->AHL20(1)  <---------ARR14(2)     <------- ---->AHL20(1)                                    --------->ARR11(3)  --------->AGP1   <---------ARR11(3) -----ARR11(3)                                    <---------ARR11(3)  <---------AGP1   --------->AHL20(1) -----AHL20(1)               *TSS                 <---------AHL20(1) <---------CCA1(2) --------->AHL20(2) ---->ARR11(3)    <---------MYB52(1)     <---------YAB1 <-----------GT1<------ZmHOX2a(2)     --------   tttttacattttatttttctgttattcacttatacatttggatgtgatagaatatttttttctgaacacacagatcttatcttcaccgatatattagctg  7858000                                                                                          --------->AHL20(1)                                                                                          <---------ARR11(3)                        <---------AHL20(2)                                                <---------AHL20(1)                        --------->AHL20(2)                                                --------->ARR11(3)           <-----------GT1    <---------AHL20(2) --------->YAB1---------->DOF2       <---------ANAC46      <-------TEIL     <---------AHL20(2) <---------------AtSPL8                <---------ANAC58 --At4g35610       ------>ZmHOX2a(1)      ------->TEIL      --------->TOE2(3)   <---------ANAC58 <--- ->At4g35610      --------->TOE2(3)       --------------->AtSPL8     <----------DOF2 <---------YAB1   aagcctgatacatttacattccttatttattttttattcacatgtatgtactaataaacaaaacttaaagactttgtattatgcgttacgaatatttttc  7858100                             <---------At4g35610             <---------WRKY12--------->At4g35610        ---------->DOF2   <---------MYB52(1)   <------------CBF      <----------DOF2  <------ZmHOX2a(1)<---------STY1(1)         <---------AHL20(2) --------->ICU4    --------->STY1(1)       ----------->TBP                     *TSS <---------YAB1  ------->GAMYB           --------->AHL20(2)          <----------DOF2 --------TGA1<---------WRKY38(1)      <----------DOF2            <----------DOF2   gtcaggattgaaaagtcaaccctaggcctttagcttccttcttttatataaacagagaaacaaaacactttctttctcagcctctctgtttcatcttctt  7858200                                                                     ------>NtERF2                                                                     <------NtERF2                                                                    --------->RAP2.6(2)                                                                    ------>NtERF2                                                                    <---------ATERF1(1)                                                                   <---------ATERF1(2)                                                                   <---------RAP2.6(2)                                                                   --------->DEAR3(1)                                                                   <---------DEAR3(1)                                                                   <---------ANAC46                                                                   --------->ATERF1(2)                                                                  <---------At4g35610                                                                  --------->At4g35610                                                                  <------NtERF2                                                                  --------->ATERF1(1)                                                                  --------->DEAR4(2)                                                                  <---------DREB2C(1)                                                                  --------->DREB2C(1)                                                                  <---------ATERF1(1)                                                                  --------->RAP2.3(1)                                                                 <---------ORA47(2)                                                                 <---------ERF1                                                                 <---------RAP2.3(1)                                                                 <---------DEAR4(2)                                                                 <---------RRTF1(1)                                                                 ------>NtERF2                                                                 <---------RAP2.6(1)                                                                <---------RAP2.6(2)                                                                <---------RAP2.3(2)                                                                <---------RAP2.3(3)                                                                --------->DEAR3(1)                                                                <---------ATERF1(2)                                                <------MYB83 <---------TGA1a                      <--                                                <---------ANAC58<---------DEAR3(1)                ---                                 =================HOX2a_HOX2a--------->TGA1a                      ---                                 ------>ZmHOX2a(2)           <---------O2                         <--                                 ===========================HOX2a_HOX2a                           ===                                <------ZmHOX2a(2)            --------->O2                         ---                               --------->ARR14(2)            --------->ANAC46                     <--                               <---------ARR14(2)    ------>ZmHOX2a(1)                            <--                             --------->DEAR3(1) <---------ANAC58<---------DREB2C(2)              <---                            <------NtERF2       <------MYB46(1) <---------RRTF1(2)               <---                           ------>NtERF2       <---------MYB46(3)<---------ATERF1(1)            <----                          <---------ALFIN1     --------->MYB59  <---------RRTF1(3)              -----                        ------>NtERF2        <---------MYB52(1)<---------ABI4(1)            ---------                    <---------ANAC58       <-----------RAV1(1)<---------ATERF1(1)         <---------MYB52(1)                    <---------ANAC58       ------>ZmHOX2a(1)<---------LBD16      <-----------RAV1(1)                <---------ANAC58============================HOX2a_HOX2a      --------->REM1(1) ------ --------->ZAT14<---------ANAC58==================HOX2a_HOX2a<---------DEAR3(1)----------->RAV1(2)---   ctctaaactctcaacatgtcttgctcggccaccgatctcgctgtcctgttgggtcctaatgccacggcggcggccaactacatctgtggccagttaggcg  7858300     ----------->RAV1(1)    --------->MYB46(3) -------TGA1a ------>bZIP60(1) ------>TGA1a                                                    <---------ANAC58 -------O2                                                       <---------ANAC58 ===================================bZIP_DOF                   ------>MYB46(1) ------>O2                                                     ------>MYB83 -------bZIP60(1)                                              -------->P -------ANAC46                                               --------->DEAR3(1) --------STF1                                                <---------MYB111(2)        <---------ANAC58 ---NtERF2               <----------DOF2                     <---------MYB46(2)         <---------ANAC58 -----ATERF1(1)     ------>NtERF2                          --------->LBD16        <---------At4g35610 ->NtERF2       --------->ETT(2)                           ------>NtERF2          --------->At4g35610 >MYB46(2)    <-----------GT1                             --------->DEAR3(1)      <---------ZAT2 ----->HVH21<---------AHL20(2)                 --------------------->WRI1         --------->ZAT2 ------>bZIP60(2)  <---------ALFIN1          -------->P  <---------LBD16         ------->TEIL   acgtcaacaacaaatttatcgacaccgctttcgctatagacaacacttaccttctcttctccgcctaccttgtcttctctatgcagcttggcttcgctat  7858400                                                                         --------->ABI4(2)                                                                        <---------AtMYB61                   <---------------------WRI1                          <---------MYB52(1)             <-----------HVH21                                       <---------DEAR3(1)             --------->LBD16                                         <---------DREB2C(2)            --------->ANAC55(2)                                      <---------MYB46(3)            <---------ANAC46                                       ------>NtERF2            <---------ANAC55(2)                                    <---------At4g35610            <---------ANAC58                                    --------->ZAT2            <---------ANAC58                      ------>MYB83  --------->ZAT14            <---------ANAC55(1)            <---------ANAC58     <---------At4g35610                 -           <-----------------------TaNAC69(2)     ------>MYB46(1)  <---------ZAT2                  --         --------->ARR14(2)                <---------ANAC58     --------->At4g35610                --         <---------ARR14(2)               <---------ICU4 ----------->HVH21                       <---       <---------DEAR3(2)          ------->TEIL--------->MYB46(3)<-----------RAV1(2)  <-----------GT1     <---------LBD16     --------->YAB1  <---------YAB1 ------>ZmHOX2a(1)<---------MYB46(3)<---------MYB52(1)   gctctgtgccggttccgtgagagccaagaatactatgaacatcatgcttaccaacgtccttgacgctgcagccggtggtctcttctattatctgtttggc  7858500              --------->ARR11(3)              <---------ARR14(2)              <---------AGP1                                                  <---------At4g35610              <---------ARR11(3)                                              --------->At4g35610              --------->ARR14(2)                                              <---------ZAT2         <----------DOF2  <---------ATHB12                            --------->ANAC46   <----------DOF2  <-----------HVH21                                 --------->ANAC58 ----->NtERF2<---------CCA1(2)                                        --------->ANAC58 ------->ANAC58--------->GLK1(1)                <----------DOF2     <---------ALFIN1 ------->ANAC58<---------GLK1(1)                --------------------->WRI1    --------->ZAT2 <------- ------ATERF1(1)------>ZmHOX2a(2)         --------->ZAT6 ---------->DOF2   <---------At4g35610   tacgcctttgcctttggatctccgtccaatggtttcatcggtaaacactactttggtctcaaagacatccccacggcctctgctgactactccaactttc  7858600                                      --------->O2                                  --------->YAB1                           <---------ANAC46                          <---------At4g35610                         <---------RAP2.3(1)                                   ------>MYB46(1)                         ------>NtERF2<---------TGA1a                          ------>MYB83                        <---------RAP2.3(2)                                  <---------MYB59                        <---------RAP2.6(2)                                  <---------MYB46(2)                        <---------DEAR3(1)            --------->MYB52(1)    --------->ANAC55(2)                        <---------ANAC46--------->ALFIN1           --------->MYB52(2)                       <---------LBD16<---------O2  ----------->HVH21   <---------ANAC58                       ------>NtERF2  --------->TGA1a<---------SPL7<---------ANAC58           -------                       <---------At4g35610        --------->At4g35610   <---------ANAC58   <---------           <----------DOF2--------->At4g35610    ------>ZmHOX2a(2) <---------ANAC58      ------>ZmHOX2a(1) ---DOF2   =====================================bZIP_DOF ----------->HVH21  <---------ANAC55(2)    <-   tctaccaatgggcctttgcaatcgctgcggctggaatcacaagtggctcgatcgctgaacggacacagttcgtggcttacctaatctattcctctttctt  7858700  Previous    Next  AGI:  At4g13500.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41162.1) Range:  from: 7856763    to: 7857929    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g13505.1    Description:  other RNA Range:  from: 7857996    to: 7859687    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g13510.1    Description:  AMT1;1 (AMMONIUM TRANSPORT 1); ammonium transmembrane transporter. Identical to Ammonium transporter 1 member 1 precursor (AMT1.1) [Arabidopsis Thaliana] (GB:P54144); similar to AMT1,3/ATAMT1,3 (AMMONIUM TRANSPORTER 1,3), ammonium transmembrane transporter [Arabidopsis thaliana] (TAIR:AT3G24300.1); similar to ammonium transporter, putative [Arabidopsis thaliana] (TAIR:AT3G24290.1); similar to ammonium transporter, putative [Arabidopsis thaliana] (TAIR:AT4G28700.1); similar to high-affinity ammonium transporter AMT1;2 [Brassica napus] (GB:AAG28780.1); similar to putative ammonium transporter AMT1;1 [Lotus japonicus] (GB:AAG24944.1); similar t Range:  from: 7858179    to: 7859914    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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