Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <---------ANAC58                                          --------->ANAC46                                <---------ANAC58                                          --------->ANAC58                       <---------MYB46(3)                                          --------->ANAC58                       <------MYB46(1)                                      --------->YAB1                             <------MYB83                                     <---------YAB1                             <---------AtMYB61                                    --------->AHL20(2)                          <---------DEAR3(1)                                   <---------------AGL15                        --------->ALFIN1                                  <---------TOE2(3)                            <---------ABI4(1)                                  <---------YAB1                              <---------ANAC58                                 --------->AHL20(2)                           <---------ANAC46             <----------DOF2     <---------AHL20(2)             --------->AHL20(2)        <---------ANAC46          --------->ARR11(3)     --------->YAB1                 <---------AHL20(2)       <-----------          <---------ARR11(3)   <---------YAB1           --------->YAB1        <---------ANAC58     <---------YAB1    <---------------AtSPL8    --------->AHL20(2)      <---------At4g35610 ------TEIL<---------YAB1    --------------->AGL15  <---------MYB52(2)   --------->At4g35610   gttcattcttattatctttagtaatcaagtactattaatattataagcaaattaactaacatgagtttaatttgcagatggggtggtggaatgcgttgag  7812300                   <-------GAMYB                                                                 <---                  <---------MYB46(3)              <---------ANAC55(2)                          ------              ------->PIF5          <----------DOF2            <----------DOF2                 <-----              <-------PIF5          <---------DAG2<---------ANAC46        --------->ANAC46    <------ ----------WRI1   <-----------RAV1(1)          <---------MYB52(1)      <---------ZAT18     <---------AHL20(2)   agcaatggaagttgcacttgctgttggacatctcgctgctttttgcaccattatgtgaatgctcactttctagttcacatcacatttacacattttatca  7812400                                                                                 <---------MYB52(2)                                                                            --------->ANAC46                               <---------ANAC58                             --------->ANAC58                               <---------ANAC58 <---------AHL20(2)          --------->ANAC58<--------  --------->ANAC58         <---------ANAC58 --------->AHL20(2)             <---------------------WRI1  --------->ANAC58         <---------ANAC58 <---------AHL20(2)         <---------------AtSPL8     <-- ------YAB1            ---------->DOF2     <---------AHL20(2)          <---------------AtSPL3    <--- --->YAB1           --------->TOE2(3)   <---------AHL20(2)      <---------AHL20(2)         <---------DAG2 ----ICU4          <---------ICU4   <---------DAG2     --------->YAB1  --------------->AtSPL8    <--- ---YAB1       <---------AHL20(2)   <----------DOF2   <---------YAB1  <---------ANAC46---------->DOF2   tgatactcaattcttatataaacattaaagcttgcttactttttatttatttagttatgaaaacatatatttatgtgtacgaaacaaacaaagccttttg  7812500                                                           <---------ANAC58                                                           <---------ANAC46                                                           <---------ANAC58                                                 --------->MYB46(2)                                                 --------->MYB59                       --------->YAB1              <-------TEIL                       --------->MYB52(2)               <---------GLK1(2)    ---------->DOF2                              ----------->GT1              <---------LBD16 --DOF2   <---------------AtSPL3               <---------MYB52(1)<---------YAB1 --------->LBD16 -----GAMYB  --------->ARR14(2)   <---------AtLEC2  <---------AHL20(2)    <-------TEIL----------->GT1 ------ANAC58--------->ALFIN1<---------ICU4<---------MYB52(1)    <---------AHL20(2)   <---------YAB1 ------ANAC58<---------ARR14(2)  <-------TEIL ------------>MYB.PH3(2)<---------AHL20(2)--------->TOE2(3)   cgttgcaaaagagaggttcggcaattcttcataaatgcatggttcgatagttagttaattttcgtgtataattaagttcatccggattatgttaattcta  7812600                                           <---------AHL20(2)                                       ----------->GT1                                       -------->HAHB4                                       --------->ATHB12                                      --------->ICU4                        <---------AHL20(2)                                      <---------YAB1         <---------TOE1(3)                                    <---------ICU4 <---------ARR14(2)  <---------ATHB12             <           <---------ICU4         <---------AHL20(2)     <----------DOF2    --------->AHL20(2)      -          --------->ICU4         --------->YAB1    --------->ARR14(2)--------->WOX13(1)      <-------     <------MYB83          ----------->GT1--------->AHL20(2) <---------TOE2(3)  --------->YAB1     <-     <------MYB46(1)     ---------->DOF2  <---------AHL20(2)---------->DOF2<---------ATHB12  <-------    --------->MYB59   --------->YAB1--------->YAB1 <-----------GT1 ------------>CBF    ------->TEIL--   tgttatttggtaatctttgtctaaaaataaagaaataaaaatgattaaatgtgtaacctctttaaagttaacaatcaataaatcatatgaacttggcatg  7812700                 ---------->DOF2               --------->ANAC46       ----------->GT1   <---------ARR14(2)   --------->GLK1(2)   --------->ARR11(3)   <---------ARR11(3)                <------------CBF   --------->ARR14(2)               <---------ICU4 ---------------AGL15        <---------ARR11(3) -------------->AGL15        --------->ARR11(3) --ANAC58      --------->ANAC58     --------->ATHB51                                     <---------YAB1 ----------------AGL1     --------->DAG2                                              <---------AHL20(2) --ANAC58      --------->ANAC58    <---------YAB1         --------->ZAT6  --------->HSFB2a(2) --------------->AGL1    ---------->DOF2 *TSS     <-------GAMYB           <---------HSFB2a(2)     ---   ttcaaaatctggtaaatacgaaagtcaaaaaggtcttataattgctccagtctgttatcaacagtaccatcaacttctggacttctattttcttattgcc  7812800                                                                                                  <--             ------>NtERF2              <---------AtMYB61           ------->PIF5                  ---            --------->WRKY38(1)     <---------DAG2                  <-------PIF5   <---------ANAC58            ----------->HVH21       <----------DOF2          <---------At4g35610   <---------ANAC58            --------->WRKY12<-----------RAV1(1)          --------->TOE2(3)         <---------ANAC46          <---------At4g35610  <---------ANAC46 <---------------AtSPL8     <----------DOF2     <----- ------>MYB52(1)         <---------MYB52(1)     <---------------AtSPL3 <------NtERF2           <-----   aaaccgatgtctcgctgaccttgaacagttgtgttgtgctttttggtggaatggtactgcctcaactgctcgtggcgctatagttgcttgggaagttgtt  7812900                                            <---------WOX13(1)                                      -                                          --------->ATHB12                                         <-        <---------ARR11(3)     ---------->DOF2                                                    ---        --------->ARR11(3)<---------At4g35610                                                     <--       <---------CCA1(2)  --------->At4g35610                                                     --- -------At4g35610    <---------ANAC58  <---------At4g35610                        <---------DAG2  <-- ------>At4g35610    <---------ANAC58  --------->At4g35610          <---------At4g35610           --- ----ANAC58       <---------ZAT18  <---------GLK1(2)                --------->At4g35610        xxxxxx ----ANAC58   <-----------RAV1(1)--------->ICU4              <<<<<<<<<<MYB80      <----------DOF2 <--   tgctcccctaaatcttctggtgggcttgggctgaaaagattagctgattggaatcagttttttggtttgaagctgatttggctacttttttctcaagacg  7813000            <---------ANAC46            <---------ANAC58            <---------ANAC58            <---------O2            <---------bZIP60(2)         --------->ALFIN1       <---------ANAC58       <---------ANAC58      <---------MYB46(3)     <---------ANAC46   <-----------RAV1(1) <----------DOF2                                                                         <---------ANAC46 ----->ZmHOX2a(2)                                                                        <---------ANAC58 -----ZmHOX2a(2)                               <----------DOF2                           <---------ANAC58 ------>ARR14(2)                              <---------ANAC58                     --------->ARR14(2) -------ARR14(2)                          <---------At4g35610                      <---------ARR14(2) ------>ARR11(3) ----------->GT1        <--------P--------->HSFB2a(2)         <------NtERF2<------NtERF2 ---------ARR10  <---------ANAC46   --------->LBD16                           <---------At4g35610 ---->TEIL <------NtERF2           <---------ANAC58                           --------->ZAT2        - xxxxxxxxxx>smallRNA(i)     --------->ANAC46  <---------ANAC58                <---------ZAT2     ---- -------ARR11(3) <---------ZAT6    <---------ANAC58       <---------YAB1      --------->At4g35610----   gatctttgtgggtgtcgtggtgtaaaacacacttcatccgtggtagatgcttttggaatgctgatttcagagccactggcagctggatttggcgtagtct  7813100                                                                                --------->ZAT14                                                                                <---------ZAT14                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                   --------->HSFB2a(2)                                                                   <---------HSFB2a(2)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      ----------->HVH21  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxx                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      -----                                                    <---------MYB46(3)  --------->ANAC58      xxxxxxx                                                    <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                    <---------ANAC58    --------->ANAC58      xxxxxxx                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxx                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxx                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxx                                                  <---------MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <----------DOF2         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->MYB59                       <---------DAG2          <---------LBD16<----------DOF2   --------->ZAT18 <----                   --------->ANAC58          <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->DOF2    --------->ANAC58        xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->ANAC58    <---------ANAC58 <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)xxxxxxxxxxxxxxx ----->ANAC58    <---------ANAC58 ----------->GT1--------->LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   cgcaaagctccattctcttgctcgcccttttgtgttctgtgaaattgtttccggtcgtgacgctcttttctggcacgataactggactgatttaggtcct  7813200  Previous    Next  AGI:  At4g13442.1    Description:  pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 37% identity and 9.1e-67 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus} Range:  from: 7812741    to: 7813963    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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