Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <-----------HVH21   --------->ANAC46  -------->P ----->ZmHOX2a(2) ---------ARR10     <-----------GT1                                           <---------ARR11(3) ------>AGP1      <----------DOF2                                             --------->ARR11(3) -------ARR11(3) <---------ICU4                           --------------------->WRI1 ->ZmHOX2a(1)  ------->TEIL                  <---------At5g28300  --------->YAB1 -ARR14(2)    <---------CCA1(2)  --------->AHL20(2)  --------->ZAT6       ---------->DOF2      ------ >ARR14(2) ------>ZmHOX2a(1)--------->LBD16 <-----------GT1      <---------YAB1<------ZmHOX2a(2)   gatctaccccgtccttgaatctttactctccccaaaaaaattcaaattaccgataacactcgttgttatcatcgtctaaagatcatatacttcccaaaaa  7710700                                                <---------YAB1<-----------GT1                 -------                                               ------------>CBF  <----------DOF2          <---------TOE2(3)                                          ------>ZmHOX2a(1)  <---------CCA1(2)      <---------CCA1(2)                       *TSS           <---------SPL7      <----------DOF2      <-----------RAV1(1) --->YAB1         <---------WOX13(1) <---------ETT(2) <----------DOF2 <-----------GT1------->TEIL  <-   tactacttgctgtattttggattgaaagtttccatgcggtcgtcctcgttacaattctttcttttatctttttttctatttgtgttgtatctaatgtatc  7710800                                                                                             --------                                                                                             --------                                                                                    <---------DOF5.7(2)                   ----------->GT1                                                 <---------WRKY38(1)         --------->YAB1   --------->DAG2                                           <---------WRKY12  --------->ATHB12 <---------TOE2(3)  <---------ALFIN1                            --------->DOF5.7(2) >TEIL----------->GT1    ---------->DOF2          <-----------GT1  --------->ARR11(3)        <------- ---------DOF2 --------->TOE2(3)    <-----------GT1 --------->REM1(1)            <-----------HVH21   actttgatttgtaataacattaagaaaaaaaggagttttcacaccttgtaagttacaacttgtagagaagctctagtctctaccgtcaacgtcttctaga  7710900                                                                          --------->TOE2(3)                                                                          --------->TOE1(3)                                                                        <---------ARR11(3)                                                                   --------->AHL20(2)                                                                --------->YAB1                                                              <---------YAB1                                                           --------->AHL20(2)                                                           <---------AHL20(2)     <---------GLK1(2)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                      ------------>CBF  --------->ARR11(3)                                                   --------->AHL20(2)  --------->RVE1(1)                                                --------->AHL20(2) <---------AHL20(1)            <---                                           <---------YAB1  <---------AHL20(1)     xxxxxxxxxxxxxxxxxxx                                   --------->TOE2(3) <-----------GT1   --------->CCA1(1)         ---- ->HSFC1(1)                      >>>>>>>>>MYB98 <---------AHL20(2) --------->AHL20(1)         <------ ->HSFB2a(2)                 ----------->GT1   --------->AHL20(2)  <---------AHL20(2)    ------>ZmHOX2a(1) --HSFB2a(2)             <---------bZIP60(1) --------->YAB1--------->AHL20(1)     <------------CBF   caaaactagtaaatgaagaagtttatgaagtcagtaacataaactattaataaataaacaatttattaataaaataccttcaccgattgtcctatataac  7711000                                                                                              -------                                                                                         >>>>>>>>>>>>                                                                                       <---------CCA1(2)                              <---------ATHB12                                     <---------ANAC58                             ------>MYB46(1)                 ---------->DOF2       <---------ANAC46 ------ARR11(3)              ------>MYB83              <---------ICU4              <---------ANAC58 xxxx>smallRNA(se3)  --------->ANAC46              <---------AHL20(2)            <---------YAB1 ----->ARR11(3)    <-----------GT1                 --------->AHL20(2)            --------->ICU4    -- -----GT1  <----------DOF2------------>CBF       --------->YAB1               --------->WRKY18(1)  <x   atctcttgtttttcttttgtttcacatcaccaatcttacatccaaaaccaaaaataaatatggcaaagtctcttctcatggtcatgcttgtatccattgt  7711100                                                                                                -----                                                                                        --------->LBD16                                   --------->CCA1(2)  <---------ARR11(1)               --------->ANAC58           <---------ANAC58    <------ZmHOX2a(1)      --------->ARR14(2)               --------->ANAC58      <---------AtLEC2       --------->LBD16 <---------REM1(1)                         --------->ANAC46    <-----------GT1         --------->HSFB2a(2)       <---------ARR14(2)              <---------LBD16 -->YAB1   <---------ANAC58 <---------LBD16 --------->ARR11(3)                        --------->MYB46(3) >>>>>LFY  <---------ANAC46 <-----------RAV1(2)       --------->ARR11(3)             <xxxxxxxxxxxxxxx ------->ICU4               <---------HSFB2a(2)       <---------ARR11(3)             <--------------- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-------TEIL     <---------CCA1(2)             <-----------GT1   aatgttttacatggcttgtccaattttctcccaggagatacatgaagatgtagccatatctccaactccattcgaagaagctaattcacccgcaatggaa  7711200                                                                                                    -                                                                                                   --                                                                                                   --                                                                                             --------                                                                                             --------                                                                                <---------AtMYB61  <-                                                                                <---------DEAR3(1) <-         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <---------ZAT2            <-------        <---------HSFC1(2)                            --------->At4g35610     --------->LBD16<-------        <---------At4g35610                           <---------At4g35610   <---------LBD16 <--------        --------->HSFB2a(1) --------->DAG2           <---------ANAC46     ------->MYC3     <xxxxxxxxx        --------->HSFC1(2) ---------->DOF2       <---------ANAC58  --------->At4g35610 --------->ARR11(3) ----->TaMYB80        --------->ANAC58           <---------ANAC58  --------->GLK1(1)   <---------ARR11(3) xsmallRNA(s)         --------->ANAC46    <---------ANAC58         --------->ZAT2    ----------->ARR10 --AGL1------->TEIL   --------->ANAC58    <---------ANAC58 ---------->DOF2<-------MYC3 <---------GLK1(2)   tatgacatgaagcttccccattactcgcaaaaagtgttcgattttcttgagacttgcgctgaaaagccgagctccatatgcggaggtgagattttccaga  7711300    <---------MYB46(3) -------->ALFIN1 ----->MYC2                                          --------->ARR14(2) ----->MYC3          ----------->HVH21               <---------ARR14(2) ->HSFC1(1)          <---------ZAT6         --------->AHL20(1) ->HSFB2a(2)    --------->TOE2(3)           <---------AHL20(1) ------MYC3     --------->TOE1(3)           --------->ARR11(3)  <---------WOX13(1) ------MYC2  ------->GAMYB            <---------ANAC58        --------->ATHB12 --HSFC1(1) <---------MYB55(2)        <---------ANAC46       --------->ICU4           --------->ARR11(3) --HSFB2a(2)--------->MYB46(3)        <---------ANAC58<---------WOX13(1)              <---------ARR11(3) -LBD16     <---------MYB111(2) <-----------RAV1(1) --------->ATHB12               <---------AHL20(2) xxxxxxxxxxxxxxsmallRNA(se3)   <---------TOE2(3)   <---------YAB1                  --------->AHL20(2)   acgtgttggatgcaacaaccttagtgacagataaatgttgtcgtgatatattgaagattggcaaagattgccatcttggtttgattaaaatcttcttctc  7711400                                                                                           <---------MYB52(1)                                                                                        <---------LBD16                                                                         --------->ANAC58 --------->LBD16                                                                         --------->ANAC58xxxxxxxxxxxx              --------->AHL20(1)              --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->ARR11(3)              --------->ANAC58    <---------ZAT6  <------MYB46(1)              <---------AHL20(1)      --------->MYB52(1)      --------->LBD16     <------MYB83           <---------AHL20(2)     --------->ANAC58           <---------ANAC58     <xxxxxxxxxxxxxxxxxx           --------->AHL20(2)   ---------->DOF2              <---------ANAC46  xxxxxxxxxxxxxxxx>smallRNA(i)      ------->TEIL             --------->ANAC46              <---------ANAC58 --------->ATHB12  <---------TOE1(2)  ------->TEIL --------->ANAC58  --------->ATHB12xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   atcgtatgaatataaaaatattgcatctattccaagaagcaaacagacatggaacgattgtttccgtagagttggaagcaagattggtgttccggtctct  7711500                                       ------->TEIL                                   --------------->AtSPL3                                   --------------->AtSPL8                                   <---------------AtSPL3                                   --------->ZAT6                                           ---------                                 <-----------GT1                                           <---------AHL20(2)                                 ------->TEIL                                             --------->AHL20(2)                              <---------bZIP60(1)                                      --------->ICU4                              --------->bZIP60(1)                                      <---------YAB1    --------->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-----------GT1       <---------CCA1(2) - xxxxxxxxxxx>smallRNA(si3)    <---------REM1(1)      --------->AHL20(2)         --------->YAB1 <----- xxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)      <---------AHL20(2)    --------->At4g35610 ------   attgaataataaacttatattccatcgttctgatgtaactgtacgtttttgtaatttaaatgttacccttataaaacagctatcatatcatttttaataa  7711600  Previous    Next  AGI:  At4g13262.1    Description:  pseudogene, Phosphoribosylanthranilate transferase, similar to Phosphoribosylanthranilate transferase; blastp match of 28% identity and 1.1e-27 P-value to GP|1396054|dbj|BAA13032.1||D86180 phosphoribosylanthranilate transferase {Pisum sativum} Range:  from: 7709656    to: 7710723    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g13263.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13261.1); contains InterPro domain Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502) Range:  from: 7711060    to: 7711616    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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