Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                 <-----------GT1             <-----------GT1                      ---                                --------->KAN4(2)     --------->TOE2(3)  ---------->DOF2       ------                              <---------YAB1     --------->ANAC58    --------->TOE1(3)      ---------                           <---------YAB1        --------->ANAC58    --------->TOE2(3)     <---------GLK1(2)                       <----------DOF2   <----------DOF2    --------->AHL20(2)     --------->GLK1(1)   gagaaaaccatctccaagttttcaactttctgattatactcatctttagacaagaaccctaatttactaaaccctaaaaacccagatttcaaagaatccc  7686500          --------->TOE1(3) -------->HVH21 ------>ANAC58                                                                                    <-- ------>ANAC58                                                                                 ------ ------>ANAC46                                                                             --------->ANAC58 ------>MYB46(3)         <---------DAG2    <---------DAG2                                  --------->ANAC46 --->TOE1(2)             <----------DOF2   <----------DOF2    ------->TEIL                 --------->ANAC58 >GLK1(2) --------->TOE2(3)     <----------DOF2      <---------ALFIN1          <---------TOE1(2)  ---   acgacccatttcccttaaatttctcaacttttctctttctttcaacttttttctcacaccgatgcacataaaccctattactacgttctctacaagtcaa  7686600                   <------ZmHOX2a(2)                   <---------GLK1(1)                   --------->GLK1(1)                  <---------ARR11(3)                  <---------ARR14(2)                  <---------AGP1                  --------->ARR14(2)                  --------->ARR11(3)                 <---------ARR14(1)                 <---------CCA1(2)          <---------ANAC55(2)          --------->ANAC55(2)        <-----------------AGL1     ----------->HVH21                                          ------->TEIL     <---------ETT(1)                                          <---------CCA1(2) --------->YAB1    --------->MYB46(3)                                  --------->ZAT18         <---------ZAT6    --------->DEAR3(2)                                  <-------TEIL      <---------TOE2(3) <---------WRKY18(1)------>ZmHOX2a(2)                   <---------ZAT18  <---------DOF5.7(2) -------ICU4 <---------ARR14(2)      --------->ALFIN1   <---------ZAT14  ---------->DOF2 --->WOX13(1)--------->ARR14(2)   <---------DEAR3(1)<---------MYB46(3) --------->DOF5.7(2) ------>YAB1<---------CCA1(2)   --------->CCA1(2)  <---------ANAC46   --------->TOE2(3)   tcttgacccgacccgtatcggatctctgaagaagagacggtgctccaagacttgtgggtacacttgaatcttcgttaaagtagtcatagctatggaagaa  7686700                <----------DOF2                                    <----------DOF2         -------->HAHB4                                            <---------DAG2         --------->YAB1                                           <-----------------AGL3           <-        <---------YAB1                                         <------ZmHOX2a(1)          <---------GLK1(2)        --------->ICU4                                     --------->TOE1(2)      ---------->DOF2  <-     --------->ICU4                                   --------->CCA1(2)       --------->ANAC58    <--    --------->ARR11(3)          ---------->DOF2      <---------ARR11(3)       --------->ANAC58    ---   gagtgagataatgataagctttgaaactcatacaaaaagataacttagaaaacaagataaacgaaggagcttttttagggacccaaaagatagattgtta  7686800               <---------GLK1(2)               --------->ARR14(2)               <---------ARR14(2)           <---------LBD16          --------------------->WRI1        --------->ZAT2        <---------ZAT2        --------->At4g35610                                              ---------->DOF2        <---------At4g35610                         >>>>>>>>>TBF1       *TSS    <-----------GT1                        ======================HOX2a_HOX2a                  ======= --------RVE1(1)                        --------->ATHB12  <------ZmHOX2a(1)  ---------->DOF2  ------- --------CCA1(1)            ----------->GT1------>ZmHOX2a(2)      <------ZmHOX2a(1)       =========== -------ARR11(3)           ----------->GT1 ==============================HOX2a_HOX2a      ---------->DOF2 ------>ARR11(3) <-------TEIL--------->DOF5.7(2)<------ZmHOX2a(1)<----------ID1     --------->ALFIN1   gatatttttcagcttcggattcgtcgaagacgttaaatagagtgatcggaggaagaagaaggagattaggacgaagaaagaaagaggtgagggaaagaaa  7686900                                 ======================================MYC_MYB                                 -------->P                              <---------At4g35610             <-------MYC3                           ============================================bZIP_DOF                           ---------->DOF2                    ------->MYC2                        <-----------HVH21                     ------->MYC4                       --------->ANAC58                       <-------MYC2                       <---------O2                           ------->MYC3                       <---------TGA1a                        <-------MYC4                       --------->TGA1a                       <--------ABF1                       --------->O2--------->TOE2(3)         <---------ANAC55(2)                       --------->ANAC58                      --------->O2                       ===============bZIP_DOF               --------->ANAC55(2)                       --------->ANAC55(1)                   <---------TGA1a                       --------->ANAC55(2)                   =============================bZIP_DOF                       --------->ANAC46                      --------->TGA1a                       ===================MYC_MYB            <---------O2                    <------- ================================bZIP_DOF             <------------CBF                       <------- --->DOF2            <---------ALFIN1            <---------MYB59                    ---------->ID1 ================================bZIP_DOF   <---------MYB52(1)-------->ABF1    <----------DOF2   gaaggaagagaagtgtgatggccacacgttacagcaacctcatctcgttagcctaacattgacacgtgtcattttgtgtttcttttgtcccttcgcatgt  7687000                   <----------DOF2                                                 --------->ANAC58         <---------AHL20(2)                                                        --------->ANAC58     <---------RVE1(1)                                                           ---------->DOF2     <---------CCA1(1)                                                        --------->HSFC1(1)    <---------AHL20(1)              --------->ARR11(3)                        <---------HSFB2a(2)    <---------ARR11(3)    --------->At4g35610                                 <---------HSFC1(1)    --------->ARR11(3)    <---------At4g35610                             <---------ANAC58 --TOE1(2)    <-----------GT1       <---------GLK1(2)                     <---------ANAC58 --TOE2(2)  <-----------GT1    <----------DOF2               <---------YAB1   --------->HSFB2a(2)   tttcaagatatttttttctctctttgggagctactttagattttggttcacatgaacaaaattttgattcagttttgcttctagaaagccaaaatttgat  7687100                                                   <---------YAB1                                                 -------->ATHB1                                                 --------->ATHB51                                      ----------->RAV1(2)  >>>>>>>>>>>>>>>>>LFY                                     ------->TEIL--------->ATHB12                              <---------ANAC58  <---------AHL20(2)                              <---------ANAC58  --------->ICU4                              <---------ANAC55(2)<---------ICU4                           --------->ICU4                         <---------ICU4         <---------ATHB51 <-----------HVH21        <---------YAB1    <-----------GT1    <-----------TGA1         --------->AHL20(2)               <---------YAB1   ttcaaattacattttactcagacttcgtcattacttatgtacctgagtaaattattgtagtatccattgtcacatttgagtagatgatagagattattgt  7687200                                                  --------->AHL20(2)                                              <---------AHL20(2)                                              --------->AHL20(2)                                             <---------YAB1                        <---------YAB1     --------->AHL20(2)             ---------->DOF2                       <---------AHL20(2)  --------->YAB1 <---------AHL20(2)                      ---                     <---------AHL20(2)--------->AHL20(2)--------->AHL20(2)          --------->ICU4                 --------->AHL20(2)    <---------AHL20(2)<---------AHL20(2)          <---------YAB1 <           --------->ANAC55(2)      --------->AHL20(2)   --------->AHL20(1)--------->DAG2        <---   -------->P    <---------AHL20(2) --------->YAB1<---------AHL20(2) ---------->DOF2<---------TOE2(3)   caaactaccacttacttatttatattattttagaacaataaaaaattataaattaaaaatttaatatcaaacaaagaaaagttgataatgtttgtgttta  7687300                                                       <---------AHL20(2)                                                      --------->AHL20(2)                                                   --------->AHL20(1)                                                   <---------AHL20(1)                                                   --------->AHL20(2)                                                   <---------AHL20(2)                                          <---------MYB111(1)        --------------->AGL15      ---------->ID1 --------->AHL20(2)     <-----------GT1         <----------DOF2      <---------ATHB12                      <----------DOF2 ------>YAB1                 <---------DAG2 ------>MYB46(1)                        --------->AHL20(2) ---------YAB1        <----------DOF2     --------->AtMYB61                        <---------AHL20(2) ------YAB1<----------DOF2<---------TOE1(3) ------>MYB83                          --------->AHL20(2)   tgataattttctcctttgtgtaaactttaagctttttgtctctaccaactcaataaatttatagtccctgtacaaattttaaaaattaatctttttctaa  7687400  Previous    Next  AGI:  At4g13250.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04900.1); similar to Os01g0227100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042468.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65523.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 7684230    to: 7686872    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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