Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------GLK1(2) <--------ATHB1 <---------ICU4          <-----------GT1                ---------->DOF2 -------->HAHB4       --------->YAB1                  --------->ANAC46 -------->ICU4     ------>ZmHOX2a(1)            ----------->RAV1(1) ---------YAB1 <---------ALFIN1            <---------ANAC58 ------>YAB1   --------->AtMYB61           <---------ANAC58 <---------ARR11(3) -------ICU4--------->AtMYB61         --------->At4g35610   --------->ARR11(3) ----->ICU4 --------->DEAR3(1)     <---------At4g35610--------->ANAC58        <---------YAB1 ------YAB1 <---------ALFIN1       --------->At4g35610--------->ANAC58  <---------YAB1        <------ --->YAB1  --------->MYB46(3) <----------DOF2--------->AtLEC2        <---------ANAC46         -------   taatgattcttccaccacctcctctcataacccttttagctgcttccttgcaacacaagaaagaccctcttgtgtttattgtgaatgtgttatcgaaatc  7657800                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)           <---------ANAC46                --------->At4g35610             --------->CCA1(2)      <---------ANAC58             ------>ZmHOX2a(2)                      --------->AGP1      <---------ANAC58            <------ZmHOX2a(2)                       --------->ARR14(2)      <---------ANAC46           --------->ARR14(2)                       <---------ARR14(2) ---ARR11(3)          ----------->GT1      ----------->RAV1(2)       <----------DOF2 -->ARR11(3)    ---------->DOF2  <---------ARR14(2)     --------->ANAC46----------->ARR10 <---------YAB1   ttctagtgtcgtctcggataaagatggatactttggatccaaaacacctgcacaattcacgacgatgtgaactttagatccgaactcttgttctgtttga  7657900                                                           <---------AHL20(2)                                                           <---------YAB1                       <---------ARR14(2)                <----------DOF2                       --------->ARR14(2)          --------->At4g35610                     --------->LBD16               <---------At4g35610                   <---------LBD16                ------>ZmHOX2a(2)              ------>ZmHOX2a(2)           <---------At5g28300     <---------At4g35610            --------->ARR11(3)        <----------DOF2 ------>NtERF2                <---------HSFB2a(2)            <---------AGP1       <---------At4g35610 --------->WRKY12              --------->HSFB2a(2)       <---------MYB46(3) ----------->HVH21      <------ZmHOX2a(2)--------->At4g35610              <-   tcaaacaagttgttgatctggtccgggtctgacacatctgctttaactgcgatcgctgactttaattgagatgagtcgtttagttctgaaaccaagagtt  7658000                                                                                                   <-                                                                                               <-----                                                                                              -------                                                                                            <--------                                                                                            <------NtERF2                                                                                          --------->ARR14(2)                                                                                   <-----------RAV1(2)                                                                        --------->DEAR3(1)<---------ARR14(2)                       <---------WOX13(1)                              --------->ANAC46   <---------PCF2                     --------->ATHB12                                  --------->ANAC58  --------->ATERF1(1)                     --------->ATHB51                                  --------->ANAC58 <---------MYB46(3)          --------->At4g35610                         ----------->GT1<-----------GT1    <---------ATERF1(1) <----------DOF2    <---------YAB1                   <---------AtMYB61<---------At5g28300<------NtERF2 --------At4g35610  --------->ICU4                --------->ALFIN1 <-----------HVH21<-----------RAV1(1)   cagcttttgatgagctcgagacataattgatggtgactcttgcaccaagagagtggaggtgaatcgcgatttcacggcccatgcctctggtggctccggt  7658100          --------->ANAC46                                                                     ------          --------->ANAC58                         <-----------GT1             ------>ZmHOX2a(1)        <---------ALFIN1                        --------->KAN4(2)          <-----------GT1   *TSS --------YAB1  --------->LBD16                 <---------KAN4(1) =====================HOX2a_HOX2a ------HVH21 <---------LBD16                   --------->KAN4(1) ------>ZmHOX2a(2)       <---------YAB1 -->LBD16 --------->ANAC58              <---------ANAC46    <---------HSFB2a(2)--------->At4g35610 -LBD16<---------REM1(2)              <----------DOF2       --------->HSFB2a(2)<---------At4g35610   cactatagctacacgcccggctagagggagagacgatgagcttcttggattattctccatttctcgatcgtgttttttttcctctgaatttttgattaaa  7658200                                                              <-------MYC3                                                              ------->MYC3                                                             <---------O2  <---------WRKY38(1)                                                             <---------PIF3(3)                                                             <---------TGA1a--------->MYB52(1)                                                             --------->O2  <---------WRKY12                                                             --------->TGA1a<---------DOF5.7(2)                                                             --------->PIF3(3)                                                           ----------->RAV1(1) ------->GAMYB                                                      <-------TEIL         <---------WRKY45                                                      ---------->DOF2<------NtERF2                                                ----------->HVH21    <---------MYB52(1)                                              <---------ANAC55(2)   <-----------HVH21  ----------->GT1   <-----------TBP        <------ZmHOX2a(2) ==========================MYC_MYB ----------->GT1<---------ALFIN1    <---------MYB46(3)=================bZIP_DOF====================== ---->DOF2--------------->AtSPL8<---------YAB1--------->ANAC55(2)   <---------RAP2.6(3)   agcagggaaaaatatggaccacatttatagacttatagttgttggatcacttgacatacagccacatggccgtcgagtcaacggtcttattttgagacat  7658300                     --------->ALFIN1                   <---------bZIP60(2)                   <---------TGA1a                   --------->ANAC55(2)                   <---------ANAC55(2)                   <---------ANAC46                   <---------ANAC58                   <---------ANAC58                   <---------ANAC55(1)                   <---------O2                   --------->O2                                            ------>ZmHOX2a(2)                   --------->TGA1a                                        <------ZmHOX2a(2)                  ----------->STF1                                        <---------GLK1(1)                  <-----------------------TaNAC69(2)                      --------->GLK1(1)                ----------->TGA1                                         --------->ARR11(3)                ----------->HVH21                                        <---------ARR11(3)           --------->ANAC58                                             --------->GLK1(1)           --------->ANAC58                                             <---------GLK1(1)       <---------ANAC58                                           ----------->RAV1(1)   --------->TOE2(3)       <---------ANAC46 <---------ZAT18                          --------->ANAC46     -------->P       <---------ANAC55(2)     --------->ZAT14                  --------->MYB46(3)   ------->GAMYB       --------->ANAC55(2)--------->ZAT18                     <---------ARR14(2)    --------->MYB46(3)       <---------ANAC58 --------->ZAT18                       --------->ARR14(2)    <---------MYB111(2) ============================MYC_MYB                         <---------CCA1(2)----------->HVH21   gtttttgtttcgtaagcagtgacgtgtgcgcattacactcttttgacatacttgtgtcttcttgtatccaccagagatctctgacaacaacctctatcag  7658400                                             =========================RAV                                             ----------->RAV1(2)                                            ------>MYB46(1)        <---------ICU4                                            ------>MYB83          <---------YAB1                                         =============================RAV                                         ----------->RAV1(2)      <------ZmHOX2a(2)                                         --------->ZAT2          --------->ARR11(3)                                        -------->P           ---------->DOF2                                        ------>MYB46(1)   ----------->RAV1(1)                                       ------>MYB83       --------->RAP2.6(2)                 --------->YAB1        ------>MYB46(1)  ------>NtERF2   <---------YAB1              --------->AtMYB61      <---------MYB59   --------->DEAR3(1)             --------->MYB46(3)      --------->MYB46(3)--------->RAP2.3(2)           <---------ALFIN1         --------->ANAC58   --------->RAP2.3(3)  <-----------RAV1(1)        ---------->ID1              --------->ANAC58  --------->ERF1 <---------YAB1      <----------DOF2        ---------->ARF1        <------ZmHOX2a(1)---------->DOF2  <---------ARR11(3)     <---------DAG2        --------->PCF2   <---------------AGL15 ----------->HVH21--------->YAB1  <-----------HVH21       <-----------HVH21 <----------DOF2------>MYB83  --------->RAP2.3(1)  <---------TOE2(3)   gctccaacttgtcccaccatcatactgcttttaggagaacccaacctgcctgaagcgcagccacaaagatcattactaatgttgtcatacccttttgttg  7658500                   <---------ICU4                            <------ZmHOX2a(2)                --------->YAB1                              --------->AGP1                <---------ICU4                              <---------ARR11(3)                <--------HAHB4                              --------->ARR14(2)               <---------YAB1                               <---------ARR14(2)               --------->ICU4                         <-----------GT1             <---------ICU4                   ------>ZmHOX2a(2)             --------->YAB1                  <------ZmHOX2a(2)            <---------YAB1                  <---------ARR14(3)          --------->YAB1                    --------->ARR11(3)         <---------YAB1                     --------->AGP1  <---------AGP1       --------->YAB1                       <---------ARR14(2)      <---------YAB1                        --------->ARR14(2)    -------->ATHB1 --------->ATHB51         <---------AGP1----------->ARR10                     <----    <---------ICU4 <--------HAHB4           --------->ARR14(3)                                  <----    --------->YAB1 --------->ATHB12         <---------ARR11(3)------>ZmHOX2a(2)         <---------ANAC46   --------->AHL20(2)                      <---------CCA1(2)--------->ARR11(3)          <---------ANAC58   <---------AHL20(2)                    <---------HSFB2a(2)--------->ARR14(3)          <---------ANAC58   --------->ICU4 <---------YAB1         --------->HSFC1(1)<---------CCA1(2)         <---------MYB52(1)   <---------YAB1 --------->ICU4   <---------ARR11(3)--------->AHL20(2)             <-------GAMYB   --------->AHL20(1)    --------->YAB1  --------->HSFB2a(2)<---------ARR14(3)     <---------MYB46(3)   acaaaattattatcatcatcattattagcatcatctagttcttctagatcttcatttaactagatcttcaaatgagttcttaagacggttgtgtgtttaa  7658600                                                                                     <-----------GT1                                                                                  <---------ICU4                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                                  --------->ATHB51                                                                                 --------->ICU4                                                     <---------ICU4            --------->YAB1                                                    --------->ICU4             <---------ICU4                                                    <---------MYB52(1)        <---------AHL20(2)                                                <---------------------WRI1    --------->AHL20(2)                                            --------->ARR14(2)               <---------AHL20(2)                                            --------->MYB52(1)            --------->AHL20(1)                                         --------->ANAC58                 <---------AHL20(2)                             --------->REM1(1) --------->ANAC46           <---------ARR11(3)                            ------>MYB46(1) <---------ARR14(2)            --------->ARR11(3)      --------->GLK1(2)     ------>MYB83 --------->ANAC58                 --------->AHL20(2) -----TOE1(3)       --------->TOE2(3)    --------->ANAC55(2)              <---------AHL20(1) -----TOE2(3)       --------->TOE1(3)    <---------ANAC55(2)           --------->AHL20(2)          --   ggtcgaagaatcaagttttgaacattaacctacatttgatgacaagtatcggccattagtacaaaaatccaaataatatattaattatttcaattttcaa  7658700  Previous    Next  AGI:  At4g13180.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23493.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 7657192    to: 7658193    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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