Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------O2   <---------YAB1                                              <---------TGA1a --------AHL20(2)     <---------ZAT2                <---------ZAT6 ------->AHL20(2)     --------->STY1(2)            >>>>>>>>>TAC1                                    - ------->YAB1         --------->ZAT2          ----------->HVH21--------->TGA1a<---------At4g35610   < ---->YAB1           ------>MYB46(1)     --------->ANAC46      --------->bZIP60(2)                  < ----YAB1            ------>MYB83     <---------WRKY38(1)      --------->O2 <-----------RAV1(2) <---- ->YAB1         <---------ALFIN1      <---------WRKY12       <---------ALFIN1 --------->At4g35610   -   ataatatgcttcactctcacacctagctcgaattctttggtaaacgcagggacagtgttatggccacgtcgatgttcttcagatgatatatatgcattat  7620500                                                                                   ------>ZmHOX2a(2)           <---------MYB52(1)     <---------TOE1(2)                              <---------ARR11(3)          <-------GAMYB          <--------P                                      --------->ARR14(2)   --------->ANAC46         ------>MYB83                                         <---------ARR14(2) --------->ANAC58           -------->P                                  <---------GLK1(2) --------->ANAC58           ------>MYB46(1)                           <---------YAB1 ------>ZmHOX2a(1) --------->ANAC46         <---------MYB111(1)                         <---------ATHB12 -------->ZAT14           <---------MYB59                        --------->ANAC46--------->AGP1 ---------ZAT18      <--------ATHB1<------MYB46(1)              --------->MYB46(3)<------ZmHOX2a(2) ---------ZAT14      --------->YAB1<------MYB83              <-----------GT1     --------->ARR11(3) -----------AtSPL8  <---------ATHB51      --------->YAB1   <-----------GT1      <---------GLK1(1) -------->ZAT18     <---------ATHB12     <---------YAB1   <-----------GT1<---------YAB1        ------   agtacacaactccgttgatgcaataatacctacttgtaggtttatgatcagggctgttttttatcaccctccatgattcttgagatcctaatgtaagaat  7620600                                                                                 ------>ZmHOX2a(1)                                                                                --------->TOE2(3)                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                            <---------CCA1(2)                                                                          --------->YAB1<---------ARR11(3)                                                                         ===============HOX2a_HOX2a                                                                         <------ZmHOX2a(2)                              <---------AHL20(2)                        <---------ARR11(3)                              --------->AHL20(2)                        --------->ARR11(3)       <---------YAB1   <---------ANAC58                               <------ZmHOX2a(1)--------->ARR11(3)    <----------DOF2     <---------ANAC46 <------NtERF2             =============HOX2a_HOX2a        <- --->GLK1(2)            <---------ANAC58------>NtERF2              ------>ZmHOX2a(1)    <---------GLK1(2)   atgaggcttttgatagtcgtcccatagcgtatttaaatttgccaccgatagaagtttatatgtattctccttaggatcatatcctaaatagatttttagg  7620700                                                   --------->HSFB2a(2)                                                --------->ARR14(2)                       ----------->GT1          <---------ARR14(2)                  --------->ANAC58            <---------ANAC58                          ------>MYB83           <---------TOE2(3)                  <---------ANAC58                          ------>MYB46(1)           --------->MYB59                   <------NtERF2                            <---------MYB59           <---------TOE1(3)               <---------ANAC46                           --------->AtMYB61      --------->ARR11(3)                   --------->ALFIN1                   ---------->DOF2      <---------ARR11(3)              --------->YAB1--------->LBD16         --------->LBD16 --------ANAC46   --------->ANAC58 <----------DOF2 <---------HSFB2a(2)      ------>ZmHOX2a(1) -------   ggcttagagattttaggttgaagcaaggttatatgttctttcatggtggggttccagattacaatctctgtattgttcctgaaagtgaccaaaccattga  7620800       <---------ZAT14                                                          --------->ARR11(3)       --------->ZAT14  --------->WOX13(1)                                      <---------ARR11(3) --------->ANAC58 <---------ICU4                --------->YAB1               <---------TOE2(3) --------->ANAC58--------->ICU4                <---------YAB1           <----------DOF2 ---->HVH21 <---------REM1(1)          <------NtERF2        --------->ANAC46---------->DOF2   cagaagcactatagttgtagtaatggcaatcttctgtagggggcatgttatgaaaattgttcacatcagaataacttttaaagttctcatgaaatgacaa  7620900                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                              <------                                                          <---------WOX13(1)                  <------                                                         <------------CBF                     <------MYB46(1)                         <---------YAB1                 --------->ATHB12                      <------MYB83                 <---------At4g35610       --------->ANAC58                                   <------            <---------ANAC58               --------->ANAC58                                  --------            <---------ANAC46         ---------->DOF2   --------->ICU4       <------------CBF <-------            <---------ANAC58    ----------------->AGL1 <---------YAB1    <---------ATHB12<-----------RAV1(1)   catgtacaagacttgcttatgctgatcatccttggccataaaagtaagaaatttttgatgattgtcgaagcgcaaatgaattgatgaaattttgttgggt  7621000                                                                                  ------------>CBF                                                                                  <------ZmHOX2a(2)                                                                                 --------->AGP1                                                                                <---------At4g35610                                                                                --------->At4g35610 -----GAMYB                                                                 <-----------HVH21       - ------->GT1                                                                <-----------TGA1        < ---MYB83--------->MYB46(3)           <---------YAB1                       --------->bZIP60(2)    --- ---MYB46(1)                       --------->TOE1(2)                       --------->O2          <--- ----->MYB55(2)                 --------->ARR11(3)                         --------->TGA1a   -------- ------MYB46(3)        --------->ANAC58                            <-----------ARR10         -------- ---ANAC58             --------->ANAC46              <---------MYB52(1)    <---------TGA1a   <------- ---ANAC58--------->TOE2(3)  ------->GAMYB  <---------ARR11(3)     --------->ARR11(3)        <------- ---ANAC46--------->YAB1  --------->MYB52(1)--------->ARR11(3)     <---------ARR11(3)        -------- ->MYB55(2)            --------->ANAC58     <---------GLK1(2)      --------->ARR14(2)        <------- --MYB46(3)       <---------YAB1<---------ARR11(3)<---------AtLEC2 <---------ARR14(2)  --------->YAB1   ggttatagacaaccatagttttgatacacaacgaaatcttacgatagattttgcaggtagtctcattagtatctccctcgtcagatcaatgggaatatat  7621100       <---------ARR14(2)       <---------ARR11(3)       --------->ARR11(3)       <---------GLK1(2)       --------->ARR14(2)     ----------->ARR10 -------->At4g35610 ---------At4g35610 ------>YAB1 ----TEIL ->AHL20(2) ->AHL20(1) --AHL20(1)                                                                                         < --AHL20(2)                                                                  <---------AtLEC2 <------ ->ARR11(3)                                         <-----------GT1       <-----------GT1     <------ --ARR11(3)                             --------->ICU4 <----------DOF2<----------DOF2 ------>ZmHOX2a(1)   tcatcagaagatactccattacaagttgatgaagactttgtaattctttgtatttctcttttcttctcttctcttttttccatggctcctaattttgctt  7621200                                   <---------AHL20(2)                                   --------->AHL20(2)                                   <---------AHL20(1)                                   --------->ARR11(3) --------->CCA1(2)                                   --------->AHL20(1)--------->ARR11(3)           --------->ARR11(3)           <---------ARR14(2)--------->TOE2(3)       <---------ARR11(3)           --------->ARR14(2)           ------->TEIL ------------>CBF             --------->ARR14(2)           <---------ARR11(3)  <---------AHL20(2)   <-----------GT1<---------AHL20(2)   ------->TEIL           <---------ARR14(2) ----------DOF2    <----------DOF2 <---------ARR11(3)<---------ARR14(2)          --------->GLK1(1) ---ANAC58 --------->ARR14(2)--------->YAB1 <---------ETT(2)            <-------TEIL ---ANAC58<---------CCA1(2) ----------->GT1 --------->ETT(2)    <-----------GT1  <---------GLK1(1)  -   ctcttttattttgtatcttcacttttaacaatgttaatatattatgtagacagtagatatgtatgttcaccatattcatgtggatatctgtttgtattaa  7621300                       <-----------GT1                                 <---------RVE1(1)                  <---------RVE1(1)                                   <---------ARR11(3)                 <---------ARR11(3)                                   --------->ARR11(3)                 <---------GLK1(2)                                    <---------GLK1(2)                 --------->ARR11(3)       --------->YAB1        <---------YAB1           ----------->GT1            --------->AHL20(2)       <---------TOE2(3)          <---------TOE1(3)--------->TOE1(3)                  <---------ICU4               <---------AHL20(2)          --------->DAG2---------->ID1<---------AHL20(2)      --------->YAB1              --------->AHL20(2)          <---------TOE2(3)--------->TOE2(3)                 --------->ICU4     ---------->ID1 --------->DOF2----------->ARR10     --------->AHL20(2)    --------->YAB1<---------AHL20(2)--------->AHL20(2)   actaaagcacataaggttagatttttttcccttaaaacatttaattagaaaaactattgcataataatgttagattttttttgtcttaaacatttaatta  7621400  Previous    Next  AGI:  At4g13060.1    Description:  F-box family protein-related. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G21240.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60954.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 7619932    to: 7620939    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g13070.1    Description:  group II intron splicing factor CRS1-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G28480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46761.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 7621343    to: 7623357    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version