Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------GLK1(2)                         --------->DOF5.7(2)                       --------------->AGL15                       <---------ANAC46                      ----------------->AGL3                      ----------------->AGL2                   <---------SPL7                  --------->ANAC55(2)                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58                                                   ---------->DOF2                 <---------------AtSPL3                                         <---------ANAC55(2)                 --------------->AtSPL8                                    ----------->GT1     ----------->GT1 --------->SPL7      <-----------RAV1(1)           --------->ETT(2)----------->GT1 -------YAB1     --------------->AtSPL3 <---------TOE2(3)      --------->LBD16 <-------TEIL      <---   ataatagatgttaaaagtttgcgtaccgtttacagaatgttttatgttgttttgtttaatatacccgagtatgtcgaaagttacatgaaaagaaaatttg  7602700                    <------MYB46(1)                    --------->ANAC55(2)                    <---------ANAC55(2)                                                             -                    <------MYB83                                                                 ----                   --------->MYB59                                                         --------->MYB46(3)                   --------->MYB111(1)                                                   ------>MYB46(1)                   --------->MYB46(2)                                                    ------>MYB83                  <---------MYB55(1)                                                   <---------MYB59         --------->YAB1                                                                --------->MYB46(3)     --------->AHL20(2)                                                               --------->ANAC58    <---------AHL20(2)                    <---------At4g35610                         --------->ANAC58    --------->AHL20(2)           <-----------GT1                              --------->AHL20(2)<---- ------AtLEC2    <---------MYB52(1)       --------->At4g35610    <---------AtLEC2     --------->ANAC46   gatgaaataaataatacttgttaggtattttagttttaccataccgctgaagttgaaccgaaactgagcatggaatcgaataaaacagacccaacaacat  7602800                                                                               --------->AHL20(2)                                                                         <---------MYB52(1)                                                                         --------->At5g28300                                                                        ----------->GT1                                                                        --------->LBD16                                                                       --------->HSFB2a(2)                                                                       <---------HSFB2a(2)                                                                      <---------LBD16                                                                  --------->HSFC1(2)                                                                  <---------HSFC1(2)                                                                  --------->HSFB2a(1)                                                                  <---------HSFB2a(1)                                                                 --------->GLK1(2)        ---------->DOF2                                          --------->ARR14(2) --------->DAG2                          --------->TOE2(3)       <-----------ARR10 --------->DOF2            --------->TOE2(3)  ---------->DOF2    --------->ARR11(3)                -- ----->YAB1       <---------DOF5.7(2)    --------->YAB1          <---------ARR14(2)                <- -----YAB1        --------->MYB52(1)  <---------CCA1(2)         <---------GLK1(2)              <-----   cataaagcccaatagcccattaacgacttcgtcaattcccctatcttaaaaagactttctccagtagaatcttccggtaaataaaacaatagtcgaagga  7602900                                                                                      <---------ATHB12                                                                                      --------->MYB46(3)                                                                                     ------>MYB46(1)                                                                                     -------->P                                                                                     ------>MYB83                                                                                   --------->AtMYB61                                                                                   <---------MYB111(1)                                                                                  <---------MYB55(2)                                                                                  <---------MYB52(2)                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                                               --------->MYB46(3)                                                                          <---------ALFIN1                                                                          --------->ANAC46     <---------MYB52(1)                                            <---------ANAC58--------->MYB46(3)    <-----------TGA1                                               <---------ANAC58------->GAMYB    <-----------HVH21                                           <---------MYB52(1)--------->MYB46(3)    --------->LBD16                        <-----------GT1     <-------GAMYB --------->AtMYB61   --------->ANAC55(2)           <---------AHL20(2)        --------->AtMYB61 <---------ALFIN1   --------->ANAC46              --------->ATHB51          <---------ALFIN1------>NtERF2 ------->GLK1(1)    --------->ANAC58 <---------AHL20(2)   <---------ABI4(2)----------->RAV1(1) --------GLK1(1)    --------->ANAC58--------->AHL20(2)    --------->MYB46(3)--------->MYB46(3) ------ -ZmHOX2a(1)    ----------->GT1  --------->AHL20(2)     <---------PCF5   --------->MYB46(3) <--------   gatttccgtcatttcaaatggtaagaaaaccagaattatttaatatcactctcttaagggaccaccgttgccttccccaccacaaccaaccattttcctc  7603000                                                                                --------->AHL20(2)                                                                                <---------AHL20(2)                              <---------ICU4                                    <---------AHL20(1)                           --------->YAB1                                       --------->AHL20(1)                          <---------YAB1            <-----------GT1         --------->AHL20(1)                      --------->AHL20(2)            <---------ARR11(3)      <---------AHL20(1)                      --------->AHL20(1)            --------->ARR11(3)      --------->AHL20(2)                      <---------AHL20(2)           --------->YAB1           <---------AHL20(2)                    <---------TOE2(3)           <---------ICU4          --------->AHL20(2)                 <---------YAB1  -------->HAHB4 --------->YAB1          <---------AHL20(2)              ------>ZmHOX2a(1) <---------YAB1  --------->ATHB51       <---------AHL20(1)           ---------->ID1--------->AHL20(2)     <--------ATHB1         --------->AHL20(2)       <----------DOF2<---------AHL20(1)        <--------HAHB4         <---------AHL20(2)    <-------     ---------->ID1--------->YAB1--------->YAB1--------->AHL20(2)  --------->AHL20(2)        <-------    <-----------GT1--------->AHL20(2)          --------->ICU4      <---------AHL20(2)    ------->TEIL <---------AHL20(2)<---------AHL20(2)          <---------ATHB51   --------->AHL20(2)  <---------ANAC55(2) >ZmHOX2a(1) --------->TOE2(3)--------->YAB1   <---------ATHB12--------->AHL20(2)     --------->ANAC55(2) ----------------ANAC81  <---------AHL20(2)------------>CBF    <---------AHL20(2)  --------->ICU4  <<   catttttttctttttccttattaatattttaataataatacaaaaatcaataattatcttcttaaatatttaatttaattaattaattatgtatttcgtt  7603100        *TSS        <<<<<<<<<TBF1     <<<<<<<<<TBF1                              --------->GLK1(2)  <<<<<<<<<TBF1                           ------>ZmHOX2a(1) --ANAC58                                --------->TOE2(3)                                 <--------- --ANAC58             <----------DOF2<---------ANAC58                                     <----------DOF2 <<<<<<<TBF1    <---------ARR11(3)   <---------ANAC58       ------>ZmHOX2a(1)        <-----------GT1   cttcttcttcttcttcaatttcttctttcttctcccatggcttcctaaacaatctgctattcctctctctcttcttcacctatagtttatctcttttttt  7603200                                                                    --------->AHL20(2)                                                                  <----------DOF2                                                                  ------>ZmHOX2a(1)                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              --------->ARR14(2)                                                              <---------GLK1(2)                                                              <---------ARR11(3)                                                              --------->AGP1                      ---                   <-----------GT1                            <---------ARR14(2)                 ----      <---------ANAC58                                        --------->ARR11(3)              ------>ZmHOX2a(1)      <---------ANAC58<---------DAG2           <---------TOE2(3)=====================================HOX2a_HOX2a ---------------ANAC81<----------DOF2  --------->ANAC46   <---------At4g35610        <---------YAB1   ttgttttggcttctcttaaattcactttctctaaaacataaacgacattgatgtttcttcatcagatcctttaattcttctccaattctcattctcctta  7603300                                                                <------------------------ANAC81                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           <---------AHL20(2)                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                        <---------ANAC58 <---------RVE1(1)           --------->GLK1(2) <---------YAB1              <---------CCA1(1)                   --------    --------->YAB1       <---------GLK1(2)              --------->ARR11(3)         <---------AHL20(2) ------>TOE2(3)    <---------YAB1       <---------ANAC58<---------ARR11(3)        <----------DOF2 ----->REM1(1)<---------AHL20(2)   <---------AHL20(2)   <---------GLK1(2) <------------------------ANAC81   catcaatggtgagaatttttttttatagattatgtttttaattcttgtgttcatgtaagatttttttttttttttttttttgtgttttattgttttctta  7603400                                                <---------ANAC58        --------->ZAT6                                                <---------ANAC58      <-----------GT1             <--                                    <---------AHL20(2)         ------>ZmHOX2a(2)      ---------->DOF2                                   --------->AHL20(2)        --------->ARR11(3)   --------->AHL20(2) <---------YAB1              <-----------GT1    <---------ANAC46<----------DOF2  --------->AHL20(2) ->TOE2(3)            <---------AHL20(2)--------->TOE2(3)    <---------ARR11(3)  <---------AHL20(2)   attccgattggatttgttttttgtttatttttctcaattttatctcaatttcttggacaaattgatctttttttactctacaaataaataaagtttgaga  7603500                                                                                   XXXXXXXXXXXXXXXXXX                                                                              <---------ICU4                                                                              --------->ATHB51                                                                              --------->ATHB12                                                                             --------->ICU4                                                                             <---------YAB1                                                                           <---------ICU4           --------->YAB1                                                  <--------HAHB4         --------->GLK1(2)                 <----------DOF2                 --------->YAB1         <---------ARR11(3)             <-----------GT1                   <---------YAB1         --------->ARR14(2)        <---------AHL20(2)                   --------->YAB1         <---------ARR14(2)      <---------RVE1(1)                      <---------ICU4       <-------         <-----------ARR10       <---------CCA1(1)                     <---------ATHB12      --------        <---------GLK1(2)       <---------GLK1(2)                   <---------AHL20(2)       <------- ---------->DOF2                --------->ARR11(3)                 --------->AHL20(2)    ---------->DOF2 --------DOF2                   <---------ARR11(3)      <------ZmHOX2a(2) --------->ICU4 <XXXXXXXXXXX   ctttatagcagaatcttcatatgtagcaattgaagatttttttttcttttctaaaccgatctaaatagattaaatcatcattattgaaaacaaaagattt  7603600  Previous    Next  AGI:  At4g13010.1    Description:  oxidoreductase, zinc-binding dehydrogenase family protein. Identical to Putative chloroplastic quinone-oxidoreductase homolog [Arabidopsis Thaliana] (GB:Q9SV68); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G23740.1); similar to unknown [Populus trichocarpa] (GB:ABK96194.1); contains InterPro domain Alcohol dehydrogenase GroES-like (InterPro:IPR013154); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149); contains InterPro domain Alcohol Range:  from: 7600548    to: 7602726    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g13020.1    Description:  MHK; kinase. Identical to Serine/threonine-protein kinase MHK (MHK) [Arabidopsis Thaliana] (GB:P43294;GB:Q9C5D4;GB:Q9SV67); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G19110.2); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G19110.1); similar to putative Cdc2-related protein kinase CRK2 [Beta vulgaris] (GB:CAB90209.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active Range:  from: 7603108    to: 7607108    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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