Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->HSFB2a(2)           --------------->AGL15          ----------------->AGL2          ----------------->AGL3                         --------->GLK1(1)          <-----------------AGL3                         <---------GLK1(1)    --------->AHL20(2)          <-----------------AGL1                     <-------MYC3     --------->TOE1(1)      --------->HSFB2a(1)      <---------HSFB2a(2)   ------->MYC3     --------->TOE2(1)            <-     ------->TEIL ----------->GT1               ------->GAMYB ------>ZmHOX2a(1)                    <- -----YAB1<-----------------AGL2             ----------->RAV1(1) <---------ALFIN1                  -- -At5g28300<---------------AGL15 <---------At4g35610----------->GT1 <---------ALFIN1               --   gaatacgaaccctctatatatggcaataaacttccagcaaacatttgcaacagcatgtgaaatccttccacctcgtccaaatatttatcgctaattcaat  7563400                         <<<<<<<<<MYB98                        ----------->GT1                       ----------->GT1                     --------->CCA1(2)              ------>MYB46(1)              ------>MYB83            --------->AtMYB61           --------->MYB46(3)        --------->MYB46(3)                                                    --------->ANAC58 ---------->DOF2    <---------ARR11(3)                             <---------ALFIN1 --------ANAC55(2)  --------->ARR11(3)                            --------->MYB46(3)              <-- --------YAB1----------->RAV1(1)                      --------->At5g28300     --------->ANAC46 <----- ------->ANAC58     --------->ARR11(1)                <-----------HVH21       --------->ANAC58<------ ------->ANAC58 ---------->DOF2        <---------GLK1(2)      --------->AtMYB61               <------   tacgaaagtgaccaccaacaaagatatgttaaaaaaacacagaaactcatgaacacggtcacaacctcaccaccttgtacaagacatacttcatccagct  7563500                                              ------>ZmHOX2a(2)                 ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                 --------->GLK1(1)                                            <---------ARR11(3)                 <------ZmHOX2a(2)                                            --------->ARR11(3)                 <---------GLK1(1)                                           --------->GLK1(1)                   --------->At4g35610                                           <---------GLK1(1)                   <---------At4g35610                                        --------->LBD16                       <---------ARR11(3)       --------->ARR11(3)              <---------ANAC46                       --------->ARR11(3)       <---------ARR11(3)             <---------LBD16                         <-----------ARR10      --------->YAB1                  <---------At4g35610               --------->ALFIN1   ---------->DOF2                    --------->At4g35610              <-----------HVH21 -------ANAC46                     --------->ZAT2    <---------ANAC58 --------->ALFIN1 ----GLK1(2)                       --------->At4g35610               --------->TOE1(2) ---ZAT2                           <---------At4g35610               ------->MYC3 ---At4g35610                      <---------ZAT2    <---------ANAC58<-------MYC3   tcttgtaaagataatcaagaacatgaacaacaatctcagcagcggagatcgtttagcttgagtcaaaaaaacgtgtgagggatctcaccatgtacaactt  7563600              <---------At4g35610              --------->At4g35610              ----------->RAV1(2)             ------>NtERF2                       >>>>>>>>>TBF1            <---------ALFIN1              ---------->DOF2         --------->ANAC46            ---------->DOF2            --------->AHL20(2)     --------->CCA1(2)            --------->ANAC46         <---------MYB52(1)    <---------ARR11(3)            --------->ANAC58        <-------GAMYB    --------->ARR11(3)            --------->ANAC58       ----------->GT1                           <-   gtaagagatattcggcacctgaacaaagacttgtacaaggaaagaaaagaagaagaataccgttaaataaaaacatgaacacagagtttggcatttgata  7563700                                                                       --------->LBD16                                                                       ------>NtERF2                                                                      --------->ANAC58                                                                      --------->ANAC46                                                                      --------->ANAC58                                                                      --------->DEAR3(1)                                                                     <---------LBD16                                                              ------->TEIL                                                          --------------->AtSPL3             >>>>>>>>>TBF1                                <---------------AtSPL3      ---------->DOF2       --------->AHL20(2)            <---------------AtSPL8            <-------- ---------->DOF2     <---------ZAT6           <---------TOE1(2)     ------>ZmHOX2a(1) ----------->RAV1(1) --------AHL20(2)    ----------->GT1   ------->TEIL       --------------->AtSPL8 <---------MYB52(1)   tataaaagaaaagaagaagaatactgttaaataaaaacatgaacatcgcagtttttcaaaaacgtacttcctccgccattacagttggccacagattgaa  7563800                                               --------->HSFC1(2)                                               <---------HSFB2a(1)                                               <---------HSFC1(2)                                               --------->HSFB2a(1)                                              ----------->ARR10                                            *TSS                                    --------->DAG2        <XXXXXXXXXXXXXXXXXXXXMIR846---------->DOF2                                          ---------       <---------AHL20(2)     --------------->AGL15                                         <--------   --------->AHL20(2)         <---------------AGL15                                  ----------->GT1 -WOX13(1)            --------->ATHB12 <-----------RAV1(2)                <---------At4g35610   acccataaatttatgtgtttcaattcattgttcttcaaaaagcaggggaagtttctcaagtttgttttgtaatctcatctgttcaaactgttaatatccg  7563900                                                                                     <---------MYB52(1)                                                                                  ------>ZmHOX2a(2)                  --------->MYB46(3)                                           --------->ATHB12   <--                <---------ICU4                                                 -------->HAHB4   <----                <-----------GT1                                               --------->ICU4    -----       <----------DOF2<---------ATHB12                   <-----------GT1      <---------ATHB12 ------ >ARR14(2)--------->YAB1         --------->YAB1    <---------YAB1             <---------YAB1   <----- -ARR14(2)--------->TOE2(3) --------->AHL20(2)  <---------MYB52(1)   ------>ZmHOX2a(2)      <--------   actgccttcctttcttaataaccactcattttaaatcgtaagtgataactgttatttttaaaccaatttgatcgaaactaatgatcggtttggagtgata  7564000                                                                                       ---------->DOF2                                                                                  <---------YAB1   --                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xx                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xx                                                     <---------HSFB2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     --------->HSFB2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ICU4   xx -------LBD16                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->YAB1 <----- -----ARR14(2)                <----------DOF2 --------->MYB52(1)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---->ARR11(3)                ------>ZmHOX2a(1)    ---------->DOF2   ---------->DOF2   xxxxxxxxxxxxxx --->GLK1(1)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)- ----GLK1(1)               ---------->ID1  --------->YAB1       <---------ZAT6 <xxxxxxxxxxxxxxxxxxxxx -ZAT6           ----------->GT1  <-----------GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx   tctgggattgaatttgagagggtatatttgtcctttttactccaaaaataagggaaagtgcctctagttttaaaagtgtctataatgcttaaagtttttc  7564100                   --------->KAN4(2)                            <-----------GT1                  <---------KAN4(1)                       <---------ICU4                  <----------TaMYB80                     <---------YAB1       <---------------AGL15                            <---------ARR11(3)       ============================================================================MADS_MADS       --------------->AGL15                           -------->HAHB4      <-----------------AGL1                           <---------ICU4  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  --------->YAB1 <---------HSFB2a(1)                                  --------->ICU4 --------->HSFB2a(1)                                 <---------TOE2(3) -------->DOF2    --------->KAN4(1)                 --------->YAB1 --------------->AGL15 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           --------->AHL20(2)  <---------------AGL15 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->AHL20(2)   <---------At5g28300                -- ----LBD16       ---------->TaMYB80        <---------AHL20(2)  <-----------GT1         <xxxxxxxxxxxxx xxxxxxxxx>smallRNA(se3)    <---------AHL20(2) <---------AHL20(2) ----------------->AGL2  xxxxxxxxxxx -------->DAG2----------->GT1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------TOE2(3) xxsmallRNA(fl3) <---------KAN4(2)<-----------GT1 <---------AHL20(2)                  --------->MYB59 xxxxxxxx>smallRNA(le3) <----------DOF2  <----------DOF2--------->ARR11(3)            <---------TOE1(3)   ggaaagtgcctcaatatggtatattcctttttatttataccctctttaattttttaatgatcattttacccctatttagaaattgttttaggttaacaaa  7564200                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                              >>>>>>>>>E2Fc          --------->AHL20(1)                  >>>>>>>>>E2Fd          <---------AHL20(1)                 --------->LBD16        <---------TOE2(3)                    ------>NtERF2                  --------->LBD16       --------->AHL20(2)           --------->AHL20(1)                     --------->ANAC46       <---------AHL20(2)           <---------AHL20(2)                     --------->ANAC58       --------->YAB1               --------->AHL20(2)                     --------->ANAC58     <----     <---------YAB1                 <---------AHL20(1)                     --------->LBD16     ------     --------->AHL20(2)            --------->AHL20(2)                     <---------LBD16     <------     <---------AHL20(2) --------->ARR11(3)  --------->ANAC46       <---------ARR11(3)         <------    --------->TOE2(3)   <---------AHL20(1)  --------->ANAC58       <---------AHL20(1)         >>>>>>>   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <<<<<<<<<<E2Fa         --------->AHL20(1)         <------   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ANAC58     <---------ARR11(3)          <-------   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------GT1          <---------AHL20(1)          <<<<<<<<  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)--------->ARR11(3)        <<<<<<<< ------->AHL20(2)       --------->AHL20(1) <---------LBD16       --------->ARR11(3)       <xxxxxxxxxx xxxxxxxxxxsmallRNA(le3)<---------ARR11(3)>>>>>>>>>>E2Fb         --------->AHL20(1) <----------DOF2 xxxxxxxxxxxx>smallRNA(se3)        <---------AHL20(2)         --------->AHL20(2)    <---------DAG2   atgaaatattaatattttttgcctaaaatattccaaaataaatttcccgccaaaaattttcgaaaaaaatatttttcccgcaaaaacttttttttggcgg  7564300  Previous    Next  AGI:  At4g12917.1    Description:  other RNA Range:  from: 7563154    to: 7563844    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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