Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------AHL20(2)                                      <---------YAB1                                     <---------AHL20(2)                                   <---------YAB1                                 <---------AHL20(2)                                 --------->AHL20(2)                                --------->AHL20(1)        --------->YAB1          --------->AHL20(2)                                               <---        <---------ICU4          <---------AHL20(2)                                             <-----       <---------YAB1           <---------AHL20(1)         <-----------GT1                   --------       <---------ATHB12--------->At4g35610   <-----------GT1                                <--------  --------->TOE2(3)    <---------At4g35610 <---------AHL20(2)      --------->TOE2(3)  <---------AHL20(2) ----TEIL <---------YAB1      --------->GLK1(2)      <---------AHL20(2)       <---------AtLEC2 ------   acatccctaatcataagtgatatatagctgagaatttatttttattttaactgattttttttttctatacattagataatgcatgaaatttatagatata  7528500            --------->AHL20(1)            <---------AHL20(2)           <---------AHL20(2)           --------->AHL20(2)                                                                --------           --------->ATHB51                                                                 <--------       --------->AHL20(1)                                                            --------->GLK1(1)       --------->AHL20(2)                                                            <---------GLK1(1)       <---------AHL20(2)                                                           <---------ARR11(3) ------AHL20(2)                                                            <---------YAB1   <-------- ----AHL20(2)                                                 <---------ARR14(2)    --------->ARR11(3) ->CCA1(2) <---------ICU4                                 <---------ZAT18--------->YAB1     <-------- -ARR11(3)--------->ICU4                    <-----------HVH21 --------->ARR14(2)---------->DOF2 --->AHL20(2)                 <-----------HVH21 <---------ALFIN1        <---------YAB1--------->ARR11(3)   aatttagaattaattattttgaaattggactgtgtcactgacttactgtcacacatttagtgcatatatgagctatgatgctaaaagatatcatccgtga  7528600       <---------At5g28300      <-----------GT1  --------->DAG2                                      --------->DAG2 ---------->DOF2                      --------->ARR14(2) ->LBD16                              <---------ARR14(2)             <-----------HVH21         ------ -ANAC58                              --------->GLK1(2)----------->GT1                  --------->ANAC58 -ANAC58              ---------->DOF2<---------GLK1(2)<---------TOE2(3)                 --------->ANAC58 -ANAC46      --------->YAB1     ---------->DOF2      <---------TOE1(3)                 --------->AtLEC2   atgaaaagttacagtctcataagtcaaagaacataaaaagaatctgaaaatagtataaggtaaaacaaaattgtcatatgtatagtactcatgcaaaaaa  7528700                                              <---------AHL20(2)                                             --------->AHL20(2)                                             <---------AHL20(2)                                      <----------DOF2                                   <---------ARR11(3)                                   <---------AHL20(1)                                   --------->ARR11(3)                                  --------->RVE1(1)                        --------->ANAC58 <---------YAB1                        --------->ANAC58 --------->AHL20(2)              --------->MYB52(1)  --------->CCA1(1)  <---------ARR14(2) <---------ZAT2--------->AHL20(1)                          ----------->GT1  --------->ARR14(2) --------->At4g35610 <---------AHL20(2)    --------->STY1(2) ---->DOF2<---------ARR11(3)  --------->AHL20(2) --------->YAB1<---------STY1(2)   agagtatttgaagaactatcggaagctcgaaatcaaatatctttttattaattagaaaactaagtagctagaagaagagaatggtgaagagaatgttaga  7528800                                                                                         <-----------GT1                                                              <---------ANAC46  <------NtERF2--------                                                          --------->At4g35610  ------>NtERF2 --------                 <---------ARR11(3)   <---------ICU4      <---------At4g35610 --------->ANAC58                 --------->ARR11(3)  <---------YAB1       <---------ZAT2     --------->RAP2.3(1)           <-------TEIL              --------->ICU4       --------->ZAT2     --------->ATERF1(1)        --------->CCA1(2)          --------->YAB1       <-----------RAV1(2) <---------ATERF1(1) <----        --------->At4g35610  --------->LBD16<---------GLK1(2) <---------ANAC58--------->RAP2.3(2) <---------ANAC55(2)       --------->DEAR3(2)    <<<<<<<<<TBF1<---------ANAC58--------->ANAC58<------   atcacatgagagatgcataaatcttggaaaccggcattgataattagattcttcttctccagctgcttgagagttgagaggcgccattttttcacatgtc  7528900                                                          <---------YAB1                                                        <---------ICU4   <---------YAB1            <-       ----------->GT1                                  --------->YAB1 <---------AHL20(2)       ----- ->ANAC46                       --------->ANAC58       <---------YAB1 <---------YAB1            <---- ->bZIP60(2)                    --------->ANAC58     <---------ICU4<---------RVE1(1)          ------- -------GT1                     --------->ANAC46    --------->ICU4<---------GLK1(2)          <------- -----HVH21              ---------->DOF2         <-------TEIL     --------->ARR11(3)         --------   actgcccaaatgtgaatttagacttggaaaagaaacgccactagtttctggttcattatcatgactcagatttttatttttgtttactcagtctagatat  7529000                                                                                      <---------YAB1                                                                             <-----------GT1                                       <---------AHL20(2)                --------->AHL20(1)          --------->YAB1  <---------AHL20(2)        <-----------TBP     <---------AHL20(2)         >>>>>>>>>MYB98  <---------AHL20(1)   ---------->ID1            --------->AHL20(2) ----------GT1           --------->AHL20(1)  <-----------GT1           --------->AHL20(2)   <-------- ---->ANAC55(2)    ------>MYB46(1)  <---------GLK1(2)                  <---------AHL20(1) <---------AHL20(2) -----ANAC55(2)    ------>MYB83     <---------ARR11(3)                 <---------AHL20(2) --------->AHL20(2) -->CCA1(2)       ----------->RAV1(1)<---------RVE1(1)      <-----------GT1 <---------AHL20(2) --ARR11(3)     --------->MYB46(3)  --------->ARR11(3)      <---------AHL20(2)       ------------>CBF ->ARR14(2)--------->TOE2(3)  ----------->HVH21 <----------DOF2<----------DOF2 <---------YAB1 -------   gtaacccatttaacataaaccaacatatatatttgacagattttttttttctttttttatatttactttacaaattattttatcatttacaattaatgtt  7529100                                                                                      --------->YAB1                                                                                  <---------YAB1                                                                                <-----------GT1                                                                             --------->YAB1                                                                             <---------ICU4                                                                            <---------AHL20(2)                                                                            --------->AHL20(2)    <--                                                                            --------->ICU4      -----                                                                            <---------ATHB51 --------                                                                        --------->AHL20(2) ----------  --------->ARR11(3)                                              --------->ANAC55(2)----------->TBP  <---------ARR11(3)                                          --------->AHL20(2)--------->YAB1 <----- -TOE2(3)      <----------DOF2                <---------------AtSPL8 <-----------GT1 --------->AHL20(2) -->ATHB12     <---------DAG2                 --------------->AtSPL8 ------->TEIL------------>CBF ---   tgaagattttaaaaacactttttcatatcaactttctacatagattagtatgtacaaatccaaaatatatgtaactaaataattacaataaatatcaatc  7529200                                                   <---------ANAC55(2)                                                   --------->At4g35610                                          <------------CBF                                         -------->ATHB1                                         -------->HAHB4                                         --------->ATHB51                                         <---------AHL20(2)                    <---------AHL20(2)   <---------ICU4                --------->YAB1          --------->ICU4      <----------DOF2     <-----------GT1--------->ATHB12   <-----------GT1  <---------AHL20(1)  <---------YAB1                 --------->AHL20(2) -------ANAC55(2)  --------->YAB1       <---------ATHB51            ----------->GT1 ---->YAB1    <-----------TBP         --------->YAB1 <---------------AGL15     ---------->DOF2 ->WOX13(1) --------->AHL20(2)       <---------AHL20(2)    --------->DAG2   --------->AHL20(2) -->CBF     <---------AHL20(2)       --------->AHL20(2)   ---------->DOF2  --------->AHL20(2) ----ATHB12<---------AHL20(2)      --------->TOE2(3)--------->TOE2(3)----------->GT1   ---------->DOF2 ------>ANAC55(2) <---------YAB1 <---------YAB1<-----------HVH21  ---------->DOF2<----------ID1    <-   acgtttttctttatttatttataatatttcacattttcattaattattgtgtcacctaaataaagcacaaaagttaaataaaaaagacaaaaagacacta  7529300                                                   --------->ARR11(3)                                                   <---------ARR11(1)                                                   <---------ARR11(3)               --------->TOE2(3)                                                   --------->ARR14(2)        ----------->TBP                                                   <-----------ARR10       --------->AHL20(2)                                                   <---------ARR14(2)      <---------AHL20(2)                                                  <---------CCA1(2)      <-----------TBP       ------                                       <---------ICU4       <---------At4g35610     --------->TOE1(3) ---------DOF2                <------------CBF  <---------ALFIN1 <---------YAB1  <-----------GT1   gcttttacaaaaaaaaaaaaaaaaaccttgcctattgcaaaacattacccccatatctcttcatatgaccatagcatttatatataccttcacttagaac  7529400  Previous    Next  AGI:  At4g12820.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G12810.1); similar to At3g03730-like protein [Arabidopsis lyrata] (GB:ABY60296.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174) Range:  from: 7527045    to: 7528887    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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