Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->LBD16                    --------->ANAC58                    --------->ANAC58                 --------->ZAT18                 --------->ZAT14                 <---------ZAT14               --------->AtLEC2                 <---------ZAT18            <---------ATHB12                 <------NtERF2              --------->WRKY18(1)                    ---------->DOF2  --------->AtLEC2<---------ALFIN1         <-----------HVH21                     <---------YAB1 --HSFB2a(2)   --------->ZAT18        <-----------GT1                     --------->YAB1  --------->AHL20(2) ->HSFB2a(2)   <---------ZAT18      <---------ATHB12                  <---------ICU4    --------->TOE2(3)   agtcatacaaaatcaagtccgcactcatccagagtccaattatccagtcatgcatatttttcattagaaaaatcaatactaatatgaaagcattaatttc  7503200                                                                                                    <                                                                                                  ---                     ----------->GT1                                                             ----                     <---------ZAT6                                                           <------                  <---------AtMYB61                                                          --------                <----------DOF2                                                             ---------           ---------->DOF2                                     <-----------GT1     <---------REM1(1)-         <---------YAB1                    --------->GLK1(1)<---------YAB1<---------AHL20(2)=========   atagtcacattataaaagctttggtgttaatagtcaatttttcagaaaccctagccttcttcattatacaggtttttatattgcgatgtagcgataaagg  7503300              --------->ZAT2              <---------ZAT2            <---------ZAT18           <---------ANAC58   <-----------GT1 <---------GLK1(1)         <---------At4g35610 <----------TaMYB80   --------->TGA1a --------->CCA1(2)<-----------RAV1(2) ---------ARR14(2)<---------HSFB2a(2) -------->GT1 --------->At4g35610 ----->ALFIN1 <---------At4g35610 ---TOE2(3)<---------ANAC58--------->At4g35610             ------>MYB46(1)                        --- ->DAG2=========================bZIP_DOF       --------->ANAC58                                  <--- ->DOF2<----------DOF2<---------TGA1a          ------>MYB46(1)------>ZmHOX2a(1)                ------ -------->ARR14(2)--------->HSFB2a(2)          ------>MYB83------>MYB83                        ------ ===============================bZIP_DOF       --------->ANAC58          <----------DOF2   <---------REM1(1)   tggatatacctttgcgagctccagacgggagatgatcaaattcagaaccaagcgatggaccatcctttcgaaaaactttagccaaaatgtgtgatgaagg  7503400                                                                    <---------HSFB2a(2)          ====                                                                  --------->At4g35610            ----                                                                  <---------At4g35610           =====                      <---------ANAC46                           ------->TEIL         ------>ZmHOX2a(1)                      <---------ANAC58                        --------->ANAC46        ===============                      <---------ANAC58              --------->At4g35610      --------->ALFIN1   <----                 <---------ANAC58                   <---------At4g35610   --------->ARR11(3)   ------ -------->RAV1(1)<---------ANAC58                 --------->MYB46(3)--------->HSFB2a(2)        <----- -------ID1   ------->GAMYB   --------->ANAC46------>ZmHOX2a(1)  <---------ARR14(2)   =============== --->ANAC58 <---------At4g35610              --------->TOE2(3)--------->ANAC58   --------->GLK1(1) --->ANAC58 --------->At4g35610          <----------DOF2      --------->ANAC58   <---------GLK1(1)   caacaagttttgacaactggccttccttgttcccacaatacatctttcctcaacagctactccaacgcatctggaagatgtggaactcctcatgagggat  7503500                            --------->ANAC58                            >>>>>>>>>MYB98           <---------TOE2(3)-------->P <---------ANAC46           ------>MYB83                                                     ------->TEIL ===================HOX2a_HOX2a       --------->ANAC58                                    --------->ANAC58 -->ZmHOX2a(2)              ------>MYB46(1)                                               --------->ANAC46 ===================HOX2a_HOX2a       --------->ANAC58                                    --------->ANAC58 ==HOX2a_HOX2a--------->ARR14(2)      --------->ANAC46                                ------>MYB46(1) --ZmHOX2a(2) <---------GLK1(2)   --------->ATHB12      <----------DOF2               ------>MYB83 --->ARR11(3) <---------ARR14(2)  <---------ICU4       <---------DAG2              --------->MYB46(3) ----ARR11(3)<------ZmHOX2a(1)   <---------ATHB12   <-----------GT1         XXXXXXXXXXXXXXXXXXXX>MIR3440B-5P ===HOX2a_HOX2a             --------->ANAC58      <-----------GT1     ------>ZmHOX2a(1)  ------------   ctatcgtataactgaggattctttgctcccaacccatcattcgccatggattttacacctttccctctactccttcttctcttgaaccatccacgtactt  7503600                                                      <-------TEIL              ---------->DOF2                       <---------ARR14(2)           --------->TOE2(3)             ------>ZmHOX2a(1)                                 ----------          --------->ZAT6--------->LBD16 --------->TOE2(3)                     <---------YAB1     --------->YAB1    --------->HSFB2a(2)          --------->ARR14(2)     <---------ARR14(2)      --     --------->TOE2(3) <---------HSFB2a(2)   <------ZmHOX2a(1)             --------->ARR14(2)   ----- --->AtSPL8--------->TOE1(3)    ------>ZmHOX2a(1)<---------ANAC46  <----------DOF2     <---------YAB1   ccttcaatgttaaccctaaagacttccccaagtcctccatttccttaggagtcggatacatttgctctgctttcacaaatacgatagctatcagtgacag  7503700      <----------ID1                                       --------->AtMYB61      ----------->GT1                                      ----------->RAV1(1)      --------->ANAC58                                   -------->P             --------->ARR11(3)      --------->ANAC58                       --------->ARR14(2)            <---------HSFB2a(2)    --------->MYB52(1)            --------->DAG2    --------->DAG2         --------->HSFB2a(2) ->HVH21                    <-----------GT1  <---------ARR14(2) <------ZmHOX2a(1)<---------RVE1(1) -------->DOF2      ----------->GT1         <---------CCA1(2)<-----------RAV1(2)<---------ARR11(3) ---->At4g35610 ---------->DOF2  ---------->DOF2   ---------->DOF2  ------------>CBF         --------   caaaagaaacgaaaaaccaaaagagaaatataaccaaaagtaaaccatatccaaaaagctaccacaggaggccaattctagagatattcttacaaagatg  7503800                                                ----------->GT1                                                <----------ID1                                    ----------->TBP                                  <---------------AGL15                                  --------------->AGL15                                 <-----------------AGL3                                 ----------------->AGL2                                 <-----------------AGL2                                 ====================================================================                                 ----------------->AGL3            --------->AHL20(2)          --------->MYB52(1)  <<<<<<<<<MYB98  ---------->DOF2--------->ANAC58    --------->ARR11(3) ->YAB1 <---------MYB52(2) ------->TEIL  ----------->GT1     --------->ANAC58    <---------ARR11(3)   atcaacacaaactaacatatcatcttatgtatgttactacaaatagaaaaaagaaaaaatcgcacccaaataaaaaccctcaagagcttgaacttgtagt  7503900                 --------------->AGL15--------->ARR11(3)                                        -----       ------>ZmHOX2a(1)              --------->GLK1(2)             <-----------RAV1(2)   <---------ATERF1(1)  --------->GLK1(1)                   <---------ARR11(3)      --------->YAB1              <---------RAP2.6(3)  <---------GLK1(1)  --------->AHL20(2)--------->RVE1(1)<---------TOE1(3)           ---------->DOF2 ================================MADS_MADS              <---------TOE2(3)<-------TEIL    --------->RAP2.6(2)   ggcgatttcctcttcatttccacttaaataaacttcagaaaatctcttactctctcttaaggtatcaaaaccaggcgcataatagttaaagccgtctcca  7504000                         <---------ARR11(3)                         --------->ARR11(3)                     --------->WOX13(1)                    --------->AHL20(2)                  --------->ANAC58                  --------->ANAC58              --------->ANAC58              --------->ANAC46         <---------ICU4              --------->ANAC58      <--------HAHB4             --------->WOX13(1)     <---------ICU4            ---------->DOF2         --------->YAB1                              --------->AtMYB61         --------->REM1(1)       --------->YAB1                          <-----------HVH21       ----------->RAV1(1)       <---------ICU4                     --------->DAG2      =============    --------->HSFB2a(2) --------->YAB1<---------YAB1               ---------->DOF2      <------ZmHOX2a(1) --------->ARR14(2)<---------ATHB12--------->ICU4               --------->YAB1 ----------------->AGL1 ------>RAV1(1)  --------->WOX13(1)<---------YAB1            --------->YAB1--------->YAB1         <--   acatttctgcaacatcaagcaatcaattatcttcatcatcattatcccataaaaactgatcaaaaatcataaagctatcagaccacaagaggaagaagcg  7504100  Previous    Next  AGI:  At4g12750.1    Description:  sequence-specific DNA binding / transcription factor. similar to HB-1 (homeobox-1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G28420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47883.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81987.1); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 7497811    to: 7503640    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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