Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------ANAC46                    <------ZmHOX2a(1)             --------->ANAC46            <---------LBD16         --------->CCA1(2)         <------ZmHOX2a(2)         ==================HOX2a_HOX2a        <---------ARR11(3)        --------->ARR11(3)        --------->ARR14(2)        <---------AGP1            --------->LBD16        <-----------ARR10       <---------LBD16                           <-------TEIL        <---------ARR14(2)    --------->GLK1(2)                          --------->ARR14(1)        --------->AGP1 <---------ZAT6          --------->ALFIN1          --------->CCA1(2)       <---------CCA1(2)      --------->ARR14(2)                        --------->ARR11(1)      ----------->ARR10--------->ALFIN1      <---------ANAC46           <---------ARR14(2) ---->YAB1=================HOX2a_HOX2a      <------ZmHOX2a(1)           --------->ARR14(2) -----ICU4------>ZmHOX2a(2)   <---------ARR14(2) --------->ALFIN1     ----------->ARR10   atgacgagcagatctacggagaggagtgtgagtttctggggtttgaggagtgtgtgaggttgaagatggagatagatacgatttgcgatagatgttagac  7462200             --------->ARR14(2)             <---------ARR14(2)          <---------ANAC46         <------MYB83         <------MYB46(1)       <--------P  <---------TOE2(3)                      <---------ZAT2      <---------ANAC58                                   --------->ANAC58      <---------ANAC58                               <---------REM1(1)      <-------GAMYB<---------TOE1(3)                 <---------ANAC46  <---------HSFB2a(2)     <---------MYB46(3)                         --------->YAB1        <---------LBD16    <---------AtMYB61                 <---------REM1(1)  --------->ANAC58                           <   ggagttttggttggggatttgaaggtttttgctcttggagttgaagccattgatggtgtaagctagggtttttctgggtgaagaatgaagagtgaatgaa  7462300                                                                  <---------ZAT18                                                                 <---------ANAC46                                                                 <---------ANAC58                                                                 <---------ANAC58                                                                --------->ATERF1(1)                                                              <---------DEAR3(1)                                                              --------->ALFIN1                                                          --------->DAG2                                                         ---------->DOF2                                                      <------NtERF2<------NtERF2                                                     --------->LBD16                    <---------YAB1                  <---------ANAC46  <---------HSFC1(2)                    --------->ICU4                  <---------ANAC58  --------->HSFC1(2)                  --------->YAB1                    >>>>>>>>>>E2Fa<---------SPL7                <XXXXXXXXXXXXXXXXXXXXMIR414         <---------ANAC58 <---------ALFIN1               --------->YAB1                      <------NtERF2<------NtERF2  <<<<<<<<<TBF1              --------->ICU4                       <---------LBD16----------->HVH21    --------->At4g35610    >>>>>>>>>TBF1--------->ICU4             ---------->DOF2--------->DAG2   <<<<<<<<<TBF1 ------ZmHOX2a(1)<---------YAB1<------ZmHOX2a(1) <---------DEAR3(1)------>NtERF2       <---------At4g35610   gaggaagaagaagacgatgatgatgatgaagaaggaggtagagagagaaagttggcgggaaaaggtggcggacacttcttcttcttcgcatcagacaaga  7462400                                                                               --------->YAB1                                                                               <---------ICU4                <-----------GT1                           <----------DOF2   --------->WOX13(1)           ----------->GT1                    <---------MYB59              --------->AHL20(2)       ---------->DOF2       --------->ARR14(2) ------>MYB46(1)            <---------AHL20(2)  <---------ANAC58           <---------ARR14(2) ------>MYB83       <-----------GT1              -----  <---------ANAC58         <------NtERF2     --------->ANAC46<---------TOE2(3)<---------ATHB12  <----  <---------ANAC46 <----------DOF2         <-----------GT1<---------DAG2  --------->AHL20(2)   <-----   gtttgcgagaaaagggtttaactttgggccgaatattgggcttattaacccaactcatcactttaggtttatccaaattaatcataacattttgggccga  7462500             <---------ATHB12                                                                     ---         <---------ATHB12                                    ----------->GT1               ----------         ------------>CBF                                  ---------->DOF2                 <---------    --------->ANAC58                                   --------->ZAT18                    -----------    --------->ANAC58     <----------DOF2            ---------->DOF2                      <---------ZAT18 ---->ARR14(2)           ------>ZmHOX2a(1)      <---------------------WRI1               --------->ZAT18 -----ARR14(2)--------->AHL20(2) ------------------------>ANAC81                 <-----------TBP*TSS ----RAP2.6(3)--------->YAB1    ---------->DOF2--------->MYB52(1)         <------------CBF-----------   tttgataagaaatcaataatataggtccttttgtgaaagaaaaaaaaaaaaacgaagagcacaaagtgaaatggggaattgttttttgtagagccctaaa  7462600                                                                                     ------>ZmHOX2a(2)                                                          --------->CCA1(2)          ================                                                         <---------ARR14(2)         <------ZmHOX2a(2)                                                   ------>ZmHOX2a(2)               <---------AGP1                                                  <------ZmHOX2a(2)                --------->AGP1                                                  --------->CCA1(2)                --------->ARR11(3)                                                  --------->At4g35610              <---------ARR11(3)                                                 --------->ARR14(2)    ----------->HVH21        >>>>>>>>>>AtWER                          <---------AGP1       ------>ZmHOX2a(2)   --------->ARR14(2)                            --------->AGP1      --------->CCA1(2)   <---------ARR11(3)                            --------->ARR11(3)  <---------At4g35610   --------->GLK1(2)                             <---------ARR14(3)  <------ZmHOX2a(2)   --------->ARR11(3)                            <---------ARR14(2) --------->AGP1 <---------ARR14(2)   <---------ARR14(2)                            <---------ARR11(3) --------->ARR14(2) -------->GT1                                   <---------GLK1(1)   <---------AGP1 --------->ARR14(2) ----->AGL15       ---------->DOF2              --------->GLK1(1)   --------->ARR11(3) ------AGL15     <---------ZAT6   >>>>>>>>>TBF1----------->ARR10    <---------ARR14(2) ------>AGL3 <---------ZAT14   >>>>>>>>>TBF1<---------ANAC46        <---------ARR11(3) ------>AGL2 --------->ZAT14>>>>>>>>>TBF1--------->ALFIN1--------->ARR14(2)       <---------CCA1(2)   tagaaaatctccaactgtagtgaaagtgaagaagaagaagaagatggtggagatctgaaaatatgcgatagatctgacgaatgcagatctaaaatggtct  7462700                                                       ------>ZmHOX2a(2)                                                     <---------ARR11(3)                                               <---------ZAT14        <---------ANAC46                                               --------->ZAT18       <------NtERF2                                               --------->ZAT14     <---------DREB2C(2)               ------>ZmHOX2a(1)             <---------------AtSPL8<---------ANAC46         ------>MYB46(1)                     <---------------AtSPL3<---------DEAR3(1)         ------>MYB83                       <------MYB83          <---------ABI4(1)        <------ZmHOX2a(1)        --------->WOX13(1)                  <------MYB46(1)   <-----------RAV1(1)     <---------HSFB2a(2) =====================HOX2a_HOX2a         <--------P --------->ARR11(3)               --------->HSFB2a(2)   aattctataccaatctcctctctcattgtttctactaagttcaagttggtgtactgatcttattttgtggcggtgtatatacagtcatctagaggaaggg  7462800                                                           <------MYB46(1)                                                           <------MYB83                                                          --------->MYB46(2)                                                          --------->MYB111(1)                                                          <---------MYB46(3)                                                          --------->MYB59                                                <---------ARR11(3)    ------>ZmHOX2a(1)                                               --------->REM1(1)--------->HSFB2a(1)            <---------TOE2(3)           <-----------HVH21 --------->MYB111(2)         <---------YAB1                --------->DEAR3(1) <---------AtMYB61  --------->ARR14(2)         <---------REM1(1)           <---------At5g28300 <--------P------>MYB83      <---------YAB1               --------->MYB46(3)    <---------MYB55(1)  <---------ARR14(2)     <      --------->ICU4             --------->ARR14(2)     <-------GAMYB ===============================    --------->YAB1               <---------ARR14(2)<----------DOF2 ------>MYB46(1)                 -- <------ZmHOX2a(1)         <------ZmHOX2a(1)----------->HVH21   <---------HSFB2a(1)                <-   agaggatgatgatgaaggaagacggtagaggaaggaatccaccgtcgcgacatctttgggttggtaaccttcctcatgggatacttgaacgagaattagc  7462900                ----------->GT1                <------MYB83                <------MYB46(1)                                                                  ----             --------->CCA1(2)                           --------->ANAC58                     <------             --------->ARR14(1)                          --------->ANAC58                     -------            <---------ARR14(2)                         --------->CCA1(2)                     --------            --------->ARR11(3)                       <---------HSFC1(2)                 <-------TEIL            --------->ARR11(1)                       --------->HSFC1(2)               <---------ARR14(2)          <---------TOE2(3)                          --------->ZAT2                   --------->ARR14(2) ------>ZmHOX2a(2)                                   <---------ZAT2         --------->YAB1  --------- ------ZmHOX2a(2)                                   <-----------ARR10  --------->AHL20(2)<---------ANAC58 ======HOX2a_HOX2a                 <---------ANAC58 ----------->ARR10  <---------AHL20(2)<---------ANAC58 ------->ARR14(2)                  <---------ANAC58 ------->TEIL      --------->YAB1 <------ZmHOX2a(1) --------ARR14(2)         ---------->DOF2  ----------->RAV1(2) ----------->GT1     <---------TOE2(3)   cgatcggttcttaagatttggtgaattggaaagcttagcgtttcagcctggacgaagctacgcatttgttaattttaatcacgatgaggatgcgttcgct  7463000                                               ------>ZmHOX2a(2)    <---------ZAT6                                             <---------ARR14(2) <--------P                                          <---------TOE2(3)     <---------MYB52(1)                                      ------>MYB46(1)          <-------GAMYB                             <---------HSFB2a(2)               --------->At5g28300 -->NtERF2                   --------->HSFB2a(2)              <---------DEAR3(2) ---At4g35610         <---------ALFIN1------>MYB83            <---------MYB46(3) -->At4g35610    <---------ANAC58--------->GLK1(1)         ------------>MYB.PH3(1) ->MYB52(2)      <---------ANAC58<---------GLK1(1)        --------->DAG2         <---------DAG2 >SPL7    <----------DOF2   <---------LBD16 <------ZmHOX2a(1)<---------DEAR3(1)  <----------DOF2  <--   gcgattgagtcgcttcaaggcttcccactctctggaaacccacttaggatcgagtttgctaaggcggttagtgttgaaaactcctttttttttttttttt  7463100  Previous    Next  AGI:  At4g12620.1    Description:  ATORC1B/ORC1B/UNE13 (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / protein binding. similar to ATORC1A/ORC1A (ORIGIN OF REPLICATION COMPLEX 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G14700.1); similar to putative origin recognition complex 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD72454.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21921.1); similar to origin recognition complex1 [Zea mays] (GB:NP_001105070.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain AAA+ ATPase, core; (InterP Range:  from: 7459643    to: 7462250    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g12640.1    Description:  RNA recognition motif (RRM)-containing protein. similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.3); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.4); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41111.1); contains InterPro domain Spen paralogue and orthologue C-terminal (InterPro:IPR012921); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 7462596    to: 7467859    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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