Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                 ====                                                                                                <----                                                                                                =====                                      --------->ARR14(2)                                       <-----                                      <---------ARR14(2)                                       <-----        <---------ICU4          <---------ANAC58         <-----------GT1                       ------     --------->YAB1             <---------ANAC46    <---------YAB1                             <----- -------->TOE1(3)               <---------ANAC58  --------->YAB1             ---------->ID1    ------ -------->TOE2(3)            <---------MYB52(1)   ----------->GT1      <<<<<<<<<TBF1           <----- -------TOE2(3)        --------->ARR14(2)    <---------DAG2         <<<<<<<<<TBF1              ------ -------TOE1(3)        <---------ARR14(2)    <----------DOF2   <------------------------ANAC81<------   aacgtaaacatcatcaccgatttcgaattcggtttcgtcgaattcgactttattgtaataaactctcttcttcttcttcgtcttcttaatcgtctcagat  7461900                                                                                                 ----                                                                                                 <---   ----------->GT1                                                                               <--- <---------WOX13(1)                                                                       <------MYB46(1) -->ZmHOX2a(2)                                                                            <---------MYB46(3) ===================HOX2a_HOX2a                                                           <------MYB83 --ZmHOX2a(2)                                                                            <---------AtMYB61 ===================HOX2a_HOX2a                                                         <--------P ------ARR10                                                                          <---------MYB46(3) ----AGP1                                                                             --------->ATHB12 --->ARR11(3)                                   <---------HSFC1(2)                    --------->MYB55(2) ----ARR11(3)                                   --------->HSFB2a(1)               --------->ATHB12 --->AGP1 <-----------RAV1(2)              <---------LBD16                     --------->bZIP60(1) ----ARR14(2)          --------->GLK1(2)<<<<<<<<<TBF1                          <---------bZIP60(1)  < --->ARR14(2)   --------->ALFIN1     <<<<<<<<<TBF1--------->GLK1(2)         --------->ANAC58    <---- ---CCA1(2)  <------ZmHOX2a(1)    <<<<<<<<<TBF1 --------->HSFC1(2)          --------->ANAC58<<<<<<<<<MYB2   ctaattggtgaaacaggagtgaaggaatctatcttcttcttcttcttcggagtttctgttttcttcgacttcgatggaacgacatcagtggttggttttc  7462000      <-------MYC3      ------->PIF5      <-------MYC4      <-------PIF5      ------->MYC3      ------->MYC2      <-------MYC2     --------->ANAC58     <---------HSFB2a(1)     --------->HSFB2a(1)     --------->ANAC58    ------------>OsbHLH66                           ------>ZmHOX2a(1)  <------NtERF2                                     --------->LBD16                    <-----------GT1 ------>NtERF2                                      ===================================HOX2a_HOX2a ----->HSFB2a(2)                                    --------->HSFB2a(2)        --------->ARR14(2) ------HSFB2a(2)                                   <---------LBD16             <---------ARR14(2) --------RAV1(1)                     --------->ATHB12            --------->MYB59<------ZmHOX2a(2) ---------RAP2.3(3)              --------->TOE1(2)----------->RAV1(2)          --------->AGP1   <---- -----LBD16                <-------TEIL           <---------ANAC46         <---------LBD16      -----   tgggggcacgttctcgttttcgaattagattcattccttcgattgggtcatttcctggagcatcaattgggtcatttcccagatcgattttacgagaaac  7462100                     <---------ANAC46                    <------ZmHOX2a(1)             --------->ANAC46            <---------LBD16         ==================HOX2a_HOX2a         --------->CCA1(2)         <------ZmHOX2a(2)        --------->ARR14(2)        <---------ARR14(2)        <---------ARR11(3)        <-----------ARR10         --------->LBD16        --------->ARR11(3)      <---------LBD16                           <-------TEIL        --------->AGP1        --------->ARR14(2)                         --------->ARR14(1)        <---------AGP1 <---------ZAT6                                    --------->CCA1(2)       <---------CCA1(2)      --------->GLK1(2)--------->ALFIN1         --------->ARR11(1)      ----------->ARR10--------->ALFIN1      <---------ANAC46           --------->ARR14(2) -----ICU4=================HOX2a_HOX2a      <------ZmHOX2a(1)           <---------ARR14(2) ---->YAB1------>ZmHOX2a(2)   <---------ARR14(2) --------->ALFIN1     ----------->ARR10   atgacgagcagatctacggagaggagtgtgagtttctggggtttgaggagtgtgtgaggttgaagatggagatagatacgatttgcgatagatgttagac  7462200             --------->ARR14(2)             <---------ARR14(2)          <---------ANAC46         <------MYB46(1)         <------MYB83       <--------P  <---------TOE2(3)                      <---------ZAT2      <-------GAMYB<---------TOE1(3)                     --------->ANAC58      <---------ANAC58                               <---------REM1(1)      <---------ANAC58                               <---------ANAC46  <---------HSFB2a(2)     <---------MYB46(3)                         --------->YAB1        <---------LBD16    <---------AtMYB61                 <---------REM1(1)  --------->ANAC58                           <   ggagttttggttggggatttgaaggtttttgctcttggagttgaagccattgatggtgtaagctagggtttttctgggtgaagaatgaagagtgaatgaa  7462300                                                                  <---------SPL7                                                                 <---------ANAC58                                                                 <---------ANAC58                                                                 <---------ANAC46                                                                --------->ATERF1(1)                                                              --------->ALFIN1                                                              <---------DEAR3(1)                                                          --------->DAG2                                                         ---------->DOF2                                                      <------NtERF2<------NtERF2                                                     --------->LBD16                    <---------YAB1                  <---------ANAC46  <---------HSFC1(2)                    --------->ICU4                  <---------ANAC58  --------->HSFC1(2)                  --------->YAB1                    >>>>>>>>>>E2Fa----------->HVH21                <XXXXXXXXXXXXXXXXXXXXMIR414         <---------ANAC58 <---------ALFIN1               --------->YAB1                      <---------LBD16<---------ZAT18      --------->At4g35610              --------->ICU4                       <------NtERF2<------NtERF2  <<<<<<<<<TBF1    >>>>>>>>>TBF1<---------YAB1             ---------->DOF2--------->DAG2   <<<<<<<<<TBF1 ------ZmHOX2a(1)--------->ICU4<------ZmHOX2a(1) <---------DEAR3(1)------>NtERF2       <---------At4g35610   gaggaagaagaagacgatgatgatgatgaagaaggaggtagagagagaaagttggcgggaaaaggtggcggacacttcttcttcttcgcatcagacaaga  7462400                                                                               <---------ICU4                                                                               --------->YAB1                <-----------GT1                           <----------DOF2   --------->WOX13(1)           ----------->GT1                    <---------MYB59              --------->AHL20(2)       ---------->DOF2       --------->ARR14(2) ------>MYB46(1)            <---------AHL20(2)  <---------ANAC58           <---------ARR14(2) ------>MYB83       <-----------GT1              <----  <---------ANAC46         <------NtERF2     --------->ANAC46<---------TOE2(3)<---------ATHB12  -----  <---------ANAC58 <----------DOF2         <-----------GT1<---------DAG2  --------->AHL20(2)   <-----   gtttgcgagaaaagggtttaactttgggccgaatattgggcttattaacccaactcatcactttaggtttatccaaattaatcataacattttgggccga  7462500             <---------ATHB12                                                                     ---         ------------>CBF                                    ----------->GT1               ----------         <---------ATHB12                                  ---------->DOF2                 <---------    --------->ANAC58                                   --------->ZAT18                    -----------    --------->ANAC58     <----------DOF2            ---------->DOF2                      --------->ZAT18 -----ARR14(2)           ------>ZmHOX2a(1)      <---------------------WRI1               <---------ZAT18 ---->ARR14(2)--------->AHL20(2) ------------------------>ANAC81                 <-----------TBP*TSS ----RAP2.6(3)--------->YAB1    ---------->DOF2--------->MYB52(1)         <------------CBF-----------   tttgataagaaatcaataatataggtccttttgtgaaagaaaaaaaaaaaaacgaagagcacaaagtgaaatggggaattgttttttgtagagccctaaa  7462600                                                                                     ================                                                          --------->CCA1(2)          ------>ZmHOX2a(2)                                                         --------->ARR14(2)         <------ZmHOX2a(2)                                                   ------>ZmHOX2a(2)               <---------ARR11(3)                                                  <------ZmHOX2a(2)                <---------ARR14(2)                                                  --------->At4g35610              --------->ARR14(2)                                                  --------->CCA1(2)                --------->ARR11(3)                                                 <---------ARR14(2)    ----------->HVH21        >>>>>>>>>>AtWER                          --------->ARR14(2)   ------>ZmHOX2a(2)   --------->GLK1(2)                             --------->AGP1      <------ZmHOX2a(2)   --------->ARR11(3)                            <---------ARR11(3)  <---------At4g35610   <---------ARR11(3)                            <---------AGP1      --------->CCA1(2)   --------->ARR14(2)                            <---------ARR14(3) <---------ARR11(3)   <---------ARR14(2)                            --------->ARR11(3) --------->ARR14(2) -------->GT1                                   --------->GLK1(1)   --------->ARR11(3) ----->AGL15       ---------->DOF2              <---------GLK1(1)   <---------AGP1 --------->AGP1 ------AGL15     <---------ZAT6   >>>>>>>>>TBF1----------->ARR10    --------->AGP1 <---------AGP1 ------>AGL3 <---------ZAT14   >>>>>>>>>TBF1<---------ANAC46        <---------ARR14(2) ------>AGL2 --------->ZAT14>>>>>>>>>TBF1--------->ALFIN1<---------ARR14(2)       <---------CCA1(2)   tagaaaatctccaactgtagtgaaagtgaagaagaagaagaagatggtggagatctgaaaatatgcgatagatctgacgaatgcagatctaaaatggtct  7462700                                                       ------>ZmHOX2a(2)                                                     <---------ARR11(3)                                               --------->ZAT14        <---------ANAC46                                               <---------ZAT14       <------NtERF2                                               --------->ZAT18     <---------ANAC46               ------>ZmHOX2a(1)             <---------------AtSPL8<---------DEAR3(1)         ------>MYB46(1)                     <---------------AtSPL3<---------DREB2C(2)         ------>MYB83                       <------MYB46(1)       <---------ABI4(1)        <------ZmHOX2a(1)        --------->WOX13(1)                  <------MYB83      <-----------RAV1(1)     <---------HSFB2a(2) =====================HOX2a_HOX2a         <--------P --------->ARR11(3)               --------->HSFB2a(2)   aattctataccaatctcctctctcattgtttctactaagttcaagttggtgtactgatcttattttgtggcggtgtatatacagtcatctagaggaaggg  7462800  Previous    Next  AGI:  At4g12620.1    Description:  ATORC1B/ORC1B/UNE13 (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / protein binding. similar to ATORC1A/ORC1A (ORIGIN OF REPLICATION COMPLEX 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G14700.1); similar to putative origin recognition complex 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD72454.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21921.1); similar to origin recognition complex1 [Zea mays] (GB:NP_001105070.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain AAA+ ATPase, core; (InterP Range:  from: 7459643    to: 7462250    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g12640.1    Description:  RNA recognition motif (RRM)-containing protein. similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.3); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.4); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41111.1); contains InterPro domain Spen paralogue and orthologue C-terminal (InterPro:IPR012921); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 7462596    to: 7467859    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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