Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <--------P                                                                    ----                   <---------WOX13(1)                                                          ------                 --------->ATHB12--------->AHL20(2)                                           -------                 ----------->GT1--------->AHL20(2)                                          <--------                 <---------MYB46(3)    <---------At5g28300                                  <--------            <---------YAB1      <---------AHL20(2)                             <------ZmHOX2a(1)----- ----ICU4 --------->YAB1      --------->YAB1                                   ----------->GT1------>MYB46(1) ---YAB1  <---------ICU4    --------->AHL20(2)     --------->ZAT6            <---------TOE2(3)------>MYB83 -->ICU4 --------->ICU4<---------WOX13(1)        <-----------GT1      <-------TEIL  ---------->DOF2 >YAB1 --------->YAB1--------->ATHB12 <-----------GT1     ---------->DOF2  ---------->DOF2  <--------   ttcgttcaagaattatgaatggttgattgaaaaaataattttaccatggattaactctctcaaaggcccaagtccattaaaggattaaaaggaacctaac  7441400                                                                         <---------GLK1(2)                                                                  <---------AHL20(2)                  <----------DOF2                                --------->AHL20(1)     --------->ANAC46                                            <---------AHL20(2)   <---------ALFIN1          <-------GAMYB                ----------->GT1--------->ARR11(3) --->GAMYB        <---------------AGL15                 ---------->DOF2<---------TOE2(3) ---->DOF2        --------------->AGL15      <---------ARR11(3)  --------->AHL20(2) -->MYB52(1)    ---------->ID1               --------->ARR11(3)  <---------AHL20(1)                 - -MYB59--------->ANAC46     <-----------RAV1(1) <---------AHL20(2)--------->AHL20(2)          ------- -MYB46(2) <---------DAG2   --------->ALFIN1<------ZmHOX2a(1)   --------->AHL20(2)   --------->AHL20(2) ---->MYB46(3) <-----------GT1            <---------TOE2(3) --------->AHL20(2)       <---------AHL20(2) -MYB111(1)<----------DOF2  <---------MYB46(3)<---------RVE1(1) <---------AHL20(2)  --------->AHL20(2)   agcccatacccgacttttttcttttttgggctgttgctcttacaaaggattttttttgtaaagtaaattaatttagattttggaaatttaaaaaaaaaaa  7441500      <---------ICU4      -------->HAHB4      --------->ATHB51      <--------ATHB1     --------->ICU4     <---------AHL20(2)                                <-------TEIL                          <-------     --------->AHL20(2)                   ---------->DOF2       <---------ICU4              <-------GAMYB     <---------ATHB51         <-----------GT1    --------->ANAC58          --------->DAG2  ---------- ---------->GT1              <<<<<<<<<<GT-3b<----------ID1     ------>ZmHOX2a(1)        <-----------GT1 --->DOF2       <-----------HVH21<----------DOF2 --------->ANAC58         ---------->DOF2<---------At5g28300   gagagaaataattgtttctgtcaaaccatatttttcttttctcaaaaagacaagaaatacatctcctaattacaaaaaaagtatgtttttttaccgttaa  7441600                                                             <------------CBF                                                           <---------AHL20(2)                                     ---------->DOF2      <---------AHL20(1)                                 >>>>>>>>>>WRKY43         --------->AHL20(2)                                 >>>>>>>>>>WRKY38         <---------AHL20(2)                                 >>>>>>>>>>WRKY26     <---------AHL20(2)                     --------->AHL20(2)               --------->AHL20(2)                           --        --------->DAG2      <---------AHL20(2)       <---------AHL20(2)                            --  <----------DOF2   --------->AHL20(2)               --------->AHL20(2)                            --  --------->TOE1(3) <---------AHL20(2)               --------->AHL20(1)     --------->AHL20(2)   ----  --------->TOE2(3) <---------AHL20(1)        --------->ANAC58             --------->AHL20(2)    <--- --MYB52(1)--------->ALFIN1--------->AHL20(2) --------->ANAC58      ----------->GT1    --------->At4g35610 ->GT1---------->DOF2<---------AHL20(2)     --------->MYB52(1)   <---------ANAC46  --------->TOE2(3)   aaaactttaaaaggtgtatcaatttaattttaaattgaccaaagacaaacgaaaatttaataaaattgtttggataaataaaaaacattatctgaaaaac  7441700   <---------DDF1   <---------ALFIN1  ------->GAMYB    --------->MYB46(3)                                                               -  --------->ANAC46------>MYB46(1)                                                               -----  --------->DREB2C(2)                                                                           ----- --------->DEAR3(2)<---------MYB55(2)                                                           <---- <------------AtMYB77    ----------->GT1                                 --------->LBD16 <---------ARR11(3) --------->MYB46(3)<---------ATHB12                <---------ARR11(3)   --------->LBD16  --------->ARR11(3) ------->MYB52(1) -------->P        --------->ANAC58         *TSS      --------->HSFB2a(2)     <----- ---->MYB83       >>>>>>>>>>>>>>>>>LFY     <-----------GT1  <-----------HVH21           --------->CCA1(1) ---->MYB46(1)    ------>MYB83---------->DOF2   <----------DOF2        <---------HSFB2a(2) --------->TOE2(3) ----->AtMYB61  <---------MYB111(2) --------->ANAC58       --------->ANAC46             --------->RVE1(1) ------MYB59  ------>ZmHOX2a(1)--------->DAG2   <---------DAG2        <---------LBD16 --------->AHL20(2)   ctaaccgacatctctcctccaaccactgtgtaaaaagcactcaaatcacactttatcttctccgtcacattttcccgagaaacaaaaaaaaaatctcaaa  7441800                                      ------->GAMYB                                      ----------->RAV1(1)                                  <---------WRKY12                                 <---------ZAT18                                  <---------WRKY45                                 --------->ZAT14                                  <---------WRKY38(1)                              <---------ZAT14                                 --------->DOF5.7(2)                            <---------ANAC58           <---------------------WRI1--------->ANAC46                           <---------ANAC46 ---------->GT1                 --------->TOE2(3)                               <---------ANAC58 ---->ARR14(2)          <---------ATHB12                  --------->ANAC58     --------------->AtSPL3 ---->GLK1(2)   --------->HSFB2a(1)<---------DOF5.7(2)    --------->ANAC46 <-------GAMYB     -------- -----ARR14(2)<------NtERF2 <---------GLK1(1)             --------->ANAC58<---------MYB46(3) -------- ----CCA1(2) ------>NtERF2  --------->GLK1(1)   ------>ZmHOX2a(1)         --------->MYB52(2) --------   tctggcaaaaaatggcgacgattccaatggatatcgtcaacgacatattcctccgattaccagcaaaaactctagttcgttgccgtgctctctctaagcc  7441900                                 ------->TEIL                                               ---------                        --------->GLK1(1)                                                   <--------                  <------ZmHOX2a(2)             <---------ANAC58                           --------->GLK1(1)                ------->GAMYB   <---------CCA1(2)                                          <---------GLK1(1)   <---------YAB1<---------ARR14(2)             <---------ANAC58            <---------GLK1(2) ->ANAC46      --------->MYB46(3)<-----------ARR10                        --------->ICU4 <------ZmHOX2a(1) ->ANAC58    --------->MYB52(1) <---------ARR14(1)                        <---------YAB1 ============ ->ANAC58  <---------ATHB12     <---------GLK1(2)             <---------MYB52(1)         ============   atgttatcatctaatcaacgatccagatttcatcgaatctcatcttcatcgcgttcttcaaaccggtgatcatctcatgattcttctcagaggagctctt  7442000               ------>ZmHOX2a(2)                                      ----------->HVH21              <------ZmHOX2a(2)                                      --------->SPL7             <---------AGP1                                      --------->ALFIN1             --------->ARR11(3)                  <---------ARR14(2) --------->PCF5             <---------ARR11(3)        ------>NtERF2          --------->ALFIN1             --------->ARR14(2) <---------ANAC58 --------->ARR14(2)<---------SPL7    <---------ZAT14     --------->ANAC55(2) --------->WRKY38(1)  <---------AtMYB61    --------->ZAT14   <-----------GT1 ----------->HVH21      ------->MYC3 >ARR11(3)   <---------ARR14(2) <---------ANAC55(2)          <-------MYC3 -ARR11(3)  <---------CCA1(2)   --------->ANAC55(2)  --------->At4g35610 ====================HOX2a_HOX2a<---------ANAC58 --------->GLK1(2)<---------MYB46(3)            ----- =====================HOX2a_HOX2a     --------->DEAR3(1)    <---------O2                     --------   cgtctctactctgtagatctcgattcacttgattccgtctccgacgttgagcatccgatgaaacgtggtggtccgaccgaagtttttggttcttccaacg  7442100                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                             <-------TEIL                         <--                                                     ----------->HVH21                          <----                       <---------At4g35610    ------>ZmHOX2a(1)                          ------>ZmHOX2a(2)                     >>>>>>>>>>AtWER         --------->TOE1(2)                          <---------GLK1(1) ------>GT1    --------->ARR14(2)            --------->TOE2(2)              ------>ZmHOX2a(1)-------- ->MYB52(1)    <---------ARR14(2)        <-----------GT1   <---------GLK1(2)====================HOX2a_HOX2a   gtttaatcgggttatcgaattctccaactgatttagcggtttttaatccttcgactcgacagattcatcgattacctccttcgtctatcgatctccccga  7442200                           --------->ANAC55(2)                           <---------ANAC55(2)                          ===========================================================================                          <---------LBD16                          <-----------------AG                          <-----------------AGL1                  <---------ANAC55(1)                  <---------bZIP60(2)                         --------->DAG2   <---------HSFB2a(2)   <-----------GT1                  --------->YAB1   --------->HSFB2a(2) <----------DOF2                   <---------YAB1 -------MYB46(3)  --------->ANAC55(2)        <---------YAB1  ---------->DOF2 -------HSFB2a(1) <---------ANAC55(2)  --------->ICU4  <---------ICU4                 <---------YAB1 ------>HSFC1(2)  <---------ANAC58     <---------YAB1 <---------YAB1       <---------MYB46(3) ------>HSFB2a(1) <---------ANAC46<------MYB46(1)     --------->ICU4       <------MYB46(1) -------HSFC1(2)  <---------ANAC58<------MYB83 <---------MYB52(1)          <------MYB83          <--- -----MYB52(1) <---------ARR14(2)<---------TOE2(3)  --------->YAB1      <------ZmHOX2a(1)     <------ ->LBD16     <---------MYB46(3)  --------->MYB59   <---------ZAT6   <---------ANAC46  <---------TOE2(3)   tggttcgagtactcgtggttacgtgttttacggattaggttatgattctgttagtgatgattataaagttgtgaggatggttcagtttaagatagattca  7442300  Previous    Next  AGI:  At4g12560.1    Description:  F-box family protein. Identical to F-box protein At4g12560 [Arabidopsis Thaliana] (GB:Q9SU30;GB:Q0WNU7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22390.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABD28492.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 7441761    to: 7443751    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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