Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------------AGL15      --------------->AGL15   <-----------GT1                                <---------ARR11(3) -----TOE1(3)           --------->YAB1            --------->ARR11(3)                --------->At5g28300 -----TOE2(3)     --------->GLK1(2)      <---------YAB1                    ---------->DOF2 --->MYB52(1)----------->GT1           <----------DOF2            ----------->GT1  ----------->GT1---   gggttttacaaaatgtggataatctataagaaaaacccaaactttgattcaatatctcaaatcccaaatagtaaatccaaagaaacagtaaatagaaatc  7352700           >>>>>>>>>TBF1     <---------HSFC1(1)                                                                             -     <---------HSFB2a(2)                                                                          ---     --------->HSFB2a(2)                                                                         ----    ------>ZmHOX2a(2)                                                                            <---   --------->CCA1(2)                                                                            <----   <------ZmHOX2a(2)                                                                            -----  --------->AGP1                                                                                -----  <---------ARR14(2)                                                                            <----  <---------AGP1 >>>>>>>>>TBF1                                                                  -----  <---------ARR11(3)                                                                            <----  --------->ARR11(3)   >>>>>>>>>TBF1                                                      --------->GLK1(2)  --------->ARR14(2)>>>>>>>>>TBF1                                                 <---------HSFB2a(2) ------->DOF2 >>>>>>>>>TBF1                       <------ZmHOX2a(1)               --------->HSFB2a(2)   taaagatctagaagaagaagaagaagaagaaacctgttgagggacaccaagaggagaagcagtaatgtaagagacttcgaagttatagaaagaatatgga  7352800   <---------At4g35610                         ------>ZmHOX2a(2)   --------->At4g35610                        <------ZmHOX2a(2)                                   <-- -------->At4g35610                          <---------ARR14(2)                                   <-- --->ZmHOX2a(2)                              --------->GLK1(2)                               <------- ----->At4g35610                             --------->ARR14(3)                             <-------- ------At4g35610                             <---------ARR14(3)                             <-------- -----AGP1                                   --------->ARR11(3)                     --------->GLK1(2) -->TEIL--------->At4g35610                  --------->ARR14(2)                     --------->ARR11(3) ---->ARR14(2)                               <---------ARR11(3)               --------->ANAC58   <--- -----ARR11(3)                              <------ZmHOX2a(1)                 --------->ANAC58   <--- ---->ARR11(3)                             <---------HSFC1(2)           <-----------GT1<----------DOF2 -----ARR14(2)           --------->ANAC46  --------->HSFC1(2)     <----------DOF2   <---------ARR11(3)   tctgcagcgaagcagaaacttatgttcacgaagaacacaagaagaaggatcttgaacaaatccattttcttttttttctctcgcaaaatcttttgctttg  7352900                                                                                  ---------->DOF2                                                                              --------->LBD16                                                                             <---------HSFB2a(2)                                <---------ANAC58                             --------->HSFB2a(2)                                <---------ANAC58                           <-------TEIL                               <------MYB46(1)                            --------->CCA1(2)                               <---------MYB46(3)                         --------->ARR14(1)                          <---------YAB1                                  --------->GLK1(2) -------DAG2         <------MYB83 <---------MYB46(3)                     <---------GLK1(2) --------DOF2        <---------ANAC46                                    --------->ARR11(1) ---DOF2             <------MYB46(1)                                     <---------ARR14(2) -ANAC58   --------->ANAC58  <---------WOX13(1)              <-----------GT1<---------LBD16 -ANAC58   --------->ANAC58--------->ATHB12    --------->ARR14(2)        --------->ARR14(2) ------ANAC58   --------->ICU4 <------MYB83    <---------ARR14(2)      <---------YAB1          <----- ------ANAC58   <-----------RAV1(1)            <---------GLK1(2)     --------->YAB1--------->DAG2----   cttttttgttgagaagcaatgttgggttttgattggttgtttttaaacagatttgttgtgaatttacattatcaagattcgggaaaaaggaagtgagaag  7353000                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                        ------>ZmHOX2a(1)                                                                              <---------TOE2(2)  <---                                                                       *TSS   <---------TOE1(2) -----                                                             --------->RAP2.6(3)       --------->TOE2(3) ----O2                                                     --------->MYB52(1)<---------TOE2(3) <---- ----->ALFIN1         ---------->DOF2    ----------->GT1 <---------------AtSPL3  <--------P ---------   tgggagaaactagaagctatagaagaaagagaagagagccagagagtgatatagacataagagaacggctacaaaattcttaggttgctccttaattatt  7353100     <---------YAB1   --------->YAB1   <---------ICU4  <---------YAB1  --------->ICU4 -------->YAB1 ---------ICU4                                           <---------AHL20(2) --------YAB1                                    --------->ANAC58 --AHL20(2)                                   --------->ARR14(2)                         <---------AHL20(2) ->AHL20(2)                                ------------>CBF                              <---------AHL20(1) ->ATHB51<---------DAG2     --------->HSFB2a(2)  --------->ANAC46                        --------->AHL20(1) --ICU4  <----------DOF2    <---------HSFB2a(2)  --------->ANAC58                        --------->AHL20(2) ------AHL20(2)          <-----------GT1 --------->LBD16--------->AHL20(2)              <---------AHL20(2) ---->AHL20(2)        <---------YAB1    --------->DEAR3(1)                          --------->AHL20(2) -----AHL20(2)     <---------YAB1  ---------->DOF2     ----------->TBP        ---------->DOF2 >ICU4<-----------GT1<---------AHL20(2) --------->RAP2.6(2)    ----------------->AGL1   --------->AHL20(2)   tattattattactttttgactattattttaccagaaataaagccgcacaatacgcctataaatttgcctaaatatgagaaaaaagaataaataaattttg  7353200                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                  <--                                                                                                  <--                                                                                                 <xxx                                                                                                 <---                                                                                                 <xxx                                                                                                <----                                                                                               ------                                                                                          xxxxxxxxxxx                                                                                      --------->ZAT18                        <---------AHL20(1)                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->AHL20(1)                <------MYB83 <-----------RAV1(1)xxxxxxxxxxx                        --------->AHL20(2)                ----------->GT1             <---------ZAT18                        <---------AHL20(2)                <------MYB46(1)            --------->ALFIN1                       <---------AHL20(2)  <---------ANAC55(2)         <---------REM1(1)xxxxxxxxxxxxx                       --------->AHL20(2)--------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -                    --------->AHL20(2)<---------ICU4     --------->MYB59           ==================                    <---------AHL20(2)--------->YAB1     <---------TOE2(3)  <---------ANAC46---------                   --------->AHL20(2)<---------YAB1--------------->AGL15 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ARR11(3)    --------->ICU4<----------DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->ARR11(3)----------->GT1   <---------------AGL15xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             ----------->GT1   <---------TOE1(3)   <---------DAG2     <---------TOE2(3)<xxxxxxxxxxxxx           ---------->DOF2     <---------TOE2(3)<-----------GT1 <---------YAB1     <-----------RAV1(1)   tgtcaaaaaaaaaaaaagataataaataaatttaagggtataattacatataactttattaggtttaaaattgatgttgcgattagtgtgggctaatccg  7353300                                           --------->ZAT14                                           <---------At4g35610       ----------->GT1                     --------->At4g35610     --------->ZAT14                       <------NtERF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i) ---------At4g35610                     --------->At4g35610 -------->At4g35610                    <xxxxxxxxxxxxxxxxsmallRNA(i) ---------ZAT2                       <xxxxxxxxxxxxxxxxsmallRNA(i) ---------RAV1(2)                   --------->MYB52(1) -------WRKY12                     ------->GAMYB xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------MYB52(2) ------MYB52(1)                   <---------MYB55(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB46(3)                                  <----------DOF2 -------HVH21                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <--------------- --->ANAC46                     xxxxxxxxxxxxxxxx>smallRNA(se3)            <---------At4g35610 xxxxxxxxxxxx>smallRNA(si3)     ----------->RAV1(1)                       --------->ZAT14           - xxxxxx>smallRNA(le3)         --------->SPL7                              <------NtERF2 <---------AHL20(2) xxxxxxxxxx>smallRNA(si3)    ------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)    --------->At4g35610       < -------->ZAT2              --------->ZAT18<---------ZAT14           --------->MYB59<---------------- =========RAV          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) < >GLK1(2)              ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(se3)  <---------At4g35610        <---------WOX13(1)   <---------ZAT14    <-------   tcagctgtccagtatatagtatttttaaagcggacaacaaacggctgcagacttaattgacagtcttcaattaggctgcagtgattttcttttatttttt  7353400             <---------ANAC46             <---------ANAC55(2)          <---------YAB1        --------->ATHB51                         <---------LBD16        <---------ICU4                     --------->ANAC58               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <--------HAHB4                    --------->DAG2                 <---------MYB52(1)       --------->ICU4                    ---------->DOF2          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------YAB1                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           --------->YAB1    <---------YAB1                    --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---------ANAC81                   --------->AHL20(2)  <---------ANAC46  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------->ARR14(2)                 <---------AHL20(2) <-------TEILxxxxxxxxxxxxxxxx>smallRNA(s) ---------GLK1(2)                 --------->AHL20(2)<---------MYB52(1) --------->MYB52(2)          <- --------ANAC81                 --------->YAB1--------->WOX13(1) --------------------->WRI1   ------- ---------ARR14(2)             <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------GT1 --AHL20(2) <---------LBD16  --------->YAB1--------->ANAC58   xxxxxxxxxxxxxxxx>smallRNA(i) --------->AtLEC2   tggattctcattattacggacaatagttcataaataataaataaaaagcaatccggttcgtagacggttttgttcgtttggactgctataaccattcaaa  7353500                                                                                                    -                                                                                                    <                                <---------YAB1                                                   ----                              --------->YAB1                                                     ----                         --------->ARR11(3)                                                      ----                       <---------YAB1                                                         -------      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                              ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <---------AHL20(2) ----  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     --------->ANAC55(2)<----- ---------DOF2         <---------TOE2(3)                                  <---------AHL20(2) -------- --->DOF2 <---------AtLEC2   <---------YAB1                               <-----------GT1--------->DAG2   gctttagtctttgcatgaaatcactaagattatgatcaatgtaaatgtagtctcacattcttctacttgaagctatttacttaattttaaaaaagtagtt  7353600  Previous    Next  AGI:  At4g12420.1    Description:  SKU5 (skewed 5); copper ion binding. Identical to Putative monocopper oxidase precursor (SKU5) [Arabidopsis Thaliana] (GB:Q9SU40;GB:Q0WM56;GB:Q8H7C9); similar to SKS1 (SKU5 SIMILAR 1), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G25240.1); similar to SKS2 (SKU5 SIMILAR 2), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G51480.1); similar to SKS3 (SKU5 Similar 3), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G48450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70326.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42682.1); similar to hypothetical protein OsI_033112 [Oryza sativa (indica cultiva Range:  from: 7349659    to: 7353071    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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