Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------At4g35610                   <---------PCF2     <---------ZAT2                        --------->TCP15(1)     --------->At4g35610                   <---------ARR14(2)                               <-------- ---------->HVH21                         <------MYB46(1)                                   ------->TEIL ------>O2                                <------MYB83                                   --------->ANAC58 -------O2                               <---------MYB46(3)                              --------->ANAC46 ------>ANAC46                          --------->ALFIN1                        --------->At4g35610 ->ANAC58                           <---------ANAC58                       <---------ETT(2) --------- ->ANAC46                  --------->MYB46(3)  ------>ZmHOX2a(1)           --------->ETT(2) --------- ->ANAC58          --------->CCA1(2)<---------ANAC58                     --------->ZAT14 --------->ANAC58   acgagacagctactatggaagacatgggaacaactcatgcgagtgggtcctgttttcgaactggagactagactctgtagacagatggaacacgaatctg  7266700                                                              <----------DOF2                                                      ------>ZmHOX2a(1)                                                   ------>MYB46(1)                                                   ------>MYB83  --------->YAB1                     -                                                <---------HSFC1(2)                               ----                                                --------->HSFB2a(1)                              ---- -ARR14(2)                  <----------DOF2     --------->HSFC1(2)            --------->ANAC46   <--- >ARR14(2)             <---------At4g35610      --------->MYB46(3)            ----------->HVH21  ---- >GLK1(2)              ------>ZmHOX2a(1)        <---------HSFB2a(1)          ------>ZmHOX2a(1) <-----   tttccatgttaaaactcttcaattcctctgctttcatgctccctagtcgaaccatcctcgattcctttgatgatgtctcctcgacatggacatactggta  7266800                  <---------WRKY12                 --------->WRKY18(1)            ------>NtERF2            --------->MYB52(1)           --------->DEAR3(1)         ------>NtERF2                                      <---------MYB46(3)        --------->ANAC58                                  ------>NtERF2        --------->ANAC58                                  <---------At4g35610        <---------bZIP60(1)                          <---------WOX13(1)        --------->bZIP60(1)                         <---------ANAC58     ----------->HVH21         <---------MYB52(1)   <---------ANAC58    <-----------HVH21      ------->GAMYB           --------->ATHB12 <------ZmHOX2a(2)  <------------AtMYB77    --------->ANAC46         <---------MYB46(3) <----------DOF2 -------->MYB52(1)<---------WRKY38(1)             --------->WRKY38(1)------>ZmHOX2a(2)       -------- ----->ANAC58  ------->GAMYB  <-------GAMYB     <-------GAMYB      <---------ARR11(3)       --------- ----->ANAC58 --------->MYB46(3)               <---------ANAC46    --------->ARR11(3)       --------- ------ANAC55(2)<-----------HVH21           --------->TOE2(2)      --------->AGP1         --------->MYB46(3) ----->ANAC55(2)--------->At5g28300        ----------->RAV1(2)   ----------->ARR10     --------->ZAT18 ---P----------->TGA1     --------->DEAR3(1)--------->TOE1(2) <---------MYB52(1)      ------>ZmHOX2a(2)   agtaactgtgacgccaacggtcaattcaacgccgttgttcataaaacctgcgttgattgcagccgttgagatctttgggactaagtgatcgcacaaccaa  7266900                                          <---------ANAC46                                          <---------AtMYB61                                          --------->ALFIN1                                       <---------AtMYB61                              --------->ATHB12   <------NtERF2             <---------YAB1                                                         - ->MYB46(3)                  --------->ICU4<---------MYB46(3)                              ---------- >ANAC58                   --------->MYB52(1)      --------->REM1(1)          ----------->GT1     <-- >ANAC58           ------>ZmHOX2a(2)   --------->ALFIN1                --------->ATHB12   <------ZmHOX2a(1)   ttgtcgtcgctatggagttgatcgtggagtaacgattggatgtggtggtgactacaactagggagactgaaattgatgggaagtgatttataggaaagcg  7267000                                                  ------>ZmHOX2a(1)                                                  ================================HOX2a_HOX2a                                                 --------->TOE1(3)                                           ==================================HOX2a_HOX2a                                           ==============HOX2a_HOX2a                                           ------>ZmHOX2a(2)                                          ===================================HOX2a_HOX2a                                          --------->GLK1(1)                                          ===============HOX2a_HOX2a                                          <---------GLK1(1)                                          <------ZmHOX2a(2)                                         <---------AGP1         <---------RAP2.6(2)             <---------ARR11(3)     <---------HSFC1(2)                  <-----------ARR10                 <------ZmHOX2a(2)     --------->HSFC1(2)                  --------->ARR11(3)               <---------ARR11(3) --------->ZAT18                         --------->ARR14(2)               --------->ARR11(3)       xx <---------ZAT18                        <------ZmHOX2a(1)                 <---------ARR14(2)      <-- -------->ALFIN1                      <---------TOE2(3)                   --------->ARR14(2)      --- >DOF2  --------->RAP2.6(3)   ----------->GT1    --------->TOE2(3)    <------ZmHOX2a(1)     <-------- -------ANAC46          ----------->HVH21<---------ARR14(2)   <---------TOE2(3)            <---------   gagtggacgtttcggctcgatggccagtgacagggtttataaggatctcatccttaatggtattgacgatgaggaagatcgagtttgtagagactttcac  7267100                                                                       <-------TEIL xxxxxxxxxxxxxx>smallRNA(s)                                    ---------->DOF2 -------ZAT2                                 --------->ATHB12<---------HSFB2a(2) ------>ZAT2                                <---------YAB1   --------->HSFB2a(2) ---HVH21                                 --------->YAB1--------->HSFC1(2)             <------------CBF -DOF2 ----------->HVH21             <------ZmHOX2a(2)  <---------HSFC1(2)        ----------->GT1   agcttggacctgaacgctcactatgggtttgggaatgggatcattcatgtttggaagaggcttctcaaagagattcacaagaagtcgtaaattgagagaa  7267200                           --------->MYB52(1)                           <---------DOF5.7(2)                    --------->CCA1(2)                                          <---------YAB1                   <---------ARR14(2)    <-----------TBP                       <---------TOE2(3) ----                <------ZmHOX2a(1)      --------->CCA1(2)                       <---------TOE1(3) <---           --------->CCA1(2)          --------->ARR11(3)                       ----------->ARR10<----          <---------ARR11(3) --------->ANAC55(2)                    --------->ARR11(3)        -------          --------->ARR11(3) <---------ANAC46                       <---------ARR11(3)     <---------ARR11(3) <------------CBF  --------->ARR14(2) <---------ARR11(3)           <---------CCA1(2)       --------->ARR11(3)   gagaattgtgaagatttaggagataggggtaacgtagtaagatatatataagcgtctgtgtgttcaactatatcttaggctaagattagcgaagatttat  7267300                                              --------->AHL20(2)                                              <---------AHL20(2)                                             --------->AHL20(2)                                             <---------AHL20(2)                                         --------->AHL20(2)                                 <--------                                <---------AHL20(1)                                          <--------                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             --------->ARR11(3)<---------AHL20(1)         --------->ARR11(3)     --------->AHL20(2)           <---------TOE1(3)             --------->ARR11(3)         <-----------ARR10      <---------AHL20(2)       <---------At4g35610     --------->TOE2(3)         <---------ARR11(3)     --------->AHL20(1)       --------->ZAT2  <---------ARR11(3)<---------ARR11(3)        --------->RVE1(1)      --------->AHL20(2)  ---------->DOF2     <---------TOE2(3) <---------TOE2(3)        --------->CCA1(1) <---------At4g35610--------->AHL20(1)    --------->At4g35610   ----------->ARR10 ----->ARR11(3)       --------->TOE2(3)  <---------AHL20(2)  <---------YAB1    --------->ARR11(3) ------ARR11(3)     <---------ARR11(3)  <---------AHL20(2)   <---------TOE2(3) <---------ARR11(3) -----CCA1(2)       --------->ARR11(3)  --------->AHL20(2)   ----------->ARR10<---------CCA1(2) -->AHL20(2)       <---------CCA1(2) --------->ATHB12    --------->At4g35610--------->AHL20(2)  <----   atcttaagaaatatctaagttatatcttagctaataaattgattaaatttaataaaagcagctaagattagctaagatttatatcttaactaagatattt  7267400                                         --------->ANAC58                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                         --------->ANAC58                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        <-------TEIL                                        --------->ZAT18                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                     <---------ANAC46                                     <---------ANAC58                                     <---------ANAC58                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                    <---------------AtSPL8                                    --------------->AtSPL8                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                 <------------CBF                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                --------->ATHB12                                <---------AHL20(2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               xxxxxxxxxxxxxxxxx>smallRNA(le3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               --------->ICU4                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <-----------TBP                        <---------ANAC46<---------ZAT14                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     --------->ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->ATHB12            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     >>>>>>>>>>>>>>>>>LFY           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  -           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             ----------->GT1            --------->AHL20(1)           ----------->GT1<---------ANAC46                 <---------TOE2(3)           <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------AHL20(2) -CCA1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2)     <<<<<<<<<<<<<<<<<LFY <---------AHL20(2) -RVE1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------->YAB1 <- -----AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2)   tcttaagtttaagaagtaaacaggtgttgtgtatttattgggtacacaaataaacaaaatgaaggaaaaaaaaaccattggagcataaataatttaaatt  7267500                                                              <-----------ARR10                                     --------->YAB1           <---------ARR11(3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  --------->YAB1--------->ARR14(2)                          --------->ATHB12      <---------ARR11(3)                         --------->MYB46(3)     --------->ARR11(3)                        >>>>>>>>>>>>>>>>>LFY  <---------TOE2(3)               --------->ANAC58            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->ARR11(3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------CCA1(1)            ----------->GT1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------RVE1(1)           --------->DAG2         --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ---------->DOF2         <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <----------DOF2 --------->ID1         <-----------GT1        ----------->ARR10 --------->TOE2(3)         ----------- ----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------CCA1(2)--------->ANAC58     --   ttttcccttaagaacttcttacttctaaccattggagcataataagttaagatattctctaacatatcttaactttgaaaaagcaaaattttaagtaaaa  7267600  Previous    Next  AGI:  At4g12140.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G12150.1); similar to hypothetical protein OsI_020156 [Oryza sativa (indica cultivar-group)] (GB:EAY98923.1); similar to Os05g0550000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056239.1); similar to hypothetical protein OsJ_018663 [Oryza sativa (japonica cultivar-group)] (GB:EAZ35180.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 7266540    to: 7267148    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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