Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <-----------ARR10       --------->GLK1(2)       --------->ARR11(3)   --------->AHL20(2)            <---------YAB1       --------->ARR14(2)   <---------AHL20(2)     <----------DOF2       <---------ARR11(3) --------->AHL20(2)      <---------ANAC58      --------->At4g35610       <---------ARR14(2) <---------AHL20(2)<---------ARR11(3)          <---------At4g35610 -----ZmHOX2a(2)      --------->AHL20(2)    --------->ARR11(3)      <-----------HVH21 ---ZmHOX2a(1)     <----------DOF2 <---------LBD16<---------ANAC58--------->MYB46(3)   gatcaagagtatctcaatgtgcttttatatatatatacctggataagaacttgctttaatgtcattgaaccatcagctaaaattccactctctgattcca  7185200                                                                                <---------YAB1               ------>ZmHOX2a(1)                ------->GAMYB                 <---------ICU4              --------->TOE2(3)              ----------->RAV1(1)             <---------YAB1   ------>ZmHOX2a(1)                        --------->ANAC46               --------->YAB1  --------->TOE2(3)            --------->WOX13(1)     <-------TEIL         <---------ICU4  --------->TOE1(3)         ------->TEIL    --------->REM1(1)<---------ATHB12--------->ICU4   aattccttagccaattcctaaacagagatgaatcaatcgcatccctacaacacacatacacaaatgaattcgactactcattattttcgaaattcttctc  7185300                    <---------HSFB2a(2)                                                 <------MYB83                    --------->HSFB2a(2)                                                 <---------DEAR3(2)                --------->GLK1(1)                                                      <---------DEAR3(1)                <---------GLK1(1)                                                   <---------ANAC46               <---------ARR14(2)                                                   <------MYB46(1)               --------->ARR14(2)                                                   <------MYB83            --------->ANAC58                                                       --------->MYB55(2)            --------->ANAC58                                                       <---------MYB46(3)            --------->ANAC46                                                     <---------MYB52(1)           --------->LBD16                                                      <-------GAMYB           <---------LBD16                                           --------->ANAC58 <--------P       <---------ARR14(2)                                <-------GAMYB <------ZmHOX2a(1)<------MYB46(1)       --------->ARR14(2)                               <---------MYB46(3)     <---------MYB46(3)      --------->GLK1(1)        ----------->HVH21      <---------At4g35610     <-------TEIL  <--------      <---------GLK1(1)      ----------->RAV1(2) --------->GLK1(2)   --------->ANAC58<-------GAMYB   cacaagggaaatccacggatatcgagaactcgcctgaaatcggaagaagagattccagcggttgcagagacaaggacaggctcgttgggttggctcggga  7185400                                                                                <---------O2                                                            <---------ANAC58   <------NtERF2                                                            <---------AtLEC2  ------>NtERF2                                                            <---------ANAC58 ----------->HVH21      <                                 <---------ARR11(3)     <----------DOF2      <---------DEAR3(1)     -                                 --------->ARR11(3)   --------->At4g35610    <----------ID1   -------                           >>>>>>>>>TBF1          --------->GLK1(2)    <---------REM1(1)    <--------   <---------WOX13(1)   >>>>>>>>>TBF1      --------->At4g35610    <---------MYB46(3)   --------->DAG2 -LBD16             <------ZmHOX2a(1)      <---------At4g35610   --------->ALFIN1     ---------->DOF2   gagtgatggattgagtaagagaggaagaagaagaagacattttgcagcgaagaatcagctttgcatggtggtgatgaaggcgacgaggtaaagcgcgtga  7185500             ------->GAMYB            --------->MYB46(3)            <------------AtMYB77          <---------ARR14(2)                                                         <---------HSFB2a(2)          --------->ARR14(2)                  --------->YAB1         *TSS            <---------LBD16          --------->MYB52(1)          --------->MYB46(3)            <---------ATHB12 --------->HSFB2a(2)   --------->ANAC58                 --------->ANAC58      --------->ANAC58           ------>ZmHOX2a(1)   --------->ANAC58                 --------->ANAC58      --------->ANAC58       --------->ANAC58 ---------ARR14(2)              --------->ANAC58        ---------->DOF2      --------->ANAC58 -------->ARR14(2)              --------->ANAC58    <---------ANAC55(2)      --------->ANAC58 ---->HVH21<---------At5g28300---------->DOF2<---------ATHB12 --------->ANAC58   --------->ANAC58 -ANAC46 ----------->HVH21 ----------->GT1 --------->WOX13(1) --------->ANAC58 <---------ALFIN1   aggaaacgcgagtaaccgcgagggaagaagagtaaagccagccatcaatgaaaaacgtgaaagcaagcaaatcactcactcgcactcctcggagaagatg  7185600                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                          --------->REM1(2)                                                       xxx                        <-------MYC4                                                              xxx           --------->ALFIN1      <----------DOF2                                                  xxx          <-------MYC3  ------->MYC2                                                              xxx          ------->MYC3  <-------MYC2                                                              xxx          <-------MYC4  ------->MYC3                                                              xxx          ------->MYC4 =====================bZIP_DOF                                              xxx          ------->MYC2 --------->TGA1a                                                            xxx          <-------MYC2 --------->O2                                                               xxx         --------->TGA1a------->MYC4                                                              xxx         <---------O2  <---------O2      --------->ARR11(3)                                       *TSS         --------->O2  <---------ANAC55(2)                                                   <-------         <---------ANAC55(2)    --------->TOE2(3)                     --------->TOE2(3)    ==========         --------->ANAC55(2)    --------->TOE1(3)          <------ZmHOX2a(1)               ----------         <---------TGA1a<-------MYC3     <---------GLK1(2)----------->GT1             --------->AtLEC2         ========================bZIP_bZIP               <---------TOE1(3)            --------->ANAC46         ===================================bZIP_DOF     <---------TOE2(3)            --------->ANAC58       <---------ALFIN1<---------TGA1a   <---------ARR11(3)--------->YAB1             --------->ANAC58   agaaattcaacacgtgttgaatcacacgtgtaaacctttaatagatttttgttttcgctaaggataaaaaaaacttaacaaatgttacaagcaaaaaggt  7185700                    <-----------HVH21                   --------->bZIP60(2)                   --------->ANAC46                   --------->ANAC58                   <---------bZIP60(1)                   --------->bZIP60(1)                   --------->O2                   <---------O2                   --------->TGA1a                   --------->ANAC55(2)                   <---------TGA1a                   --------->ANAC58            <-------GAMYB            =================MYC_MYB           <------MYB46(1)           <---------MYB46(3)    <---------ANAC46<-----------TGA1    <---------REM1(1) xxxxxxxxxxxxxxx>smallRNA(si3) --------ANAC58    <---------ANAC55(2) --------ANAC46    --------->ANAC55(1) --------ANAC58   <-----------STF1 xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(se3)                          --------->LBD16 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <---------LBD16 xxxxxxxxxxxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <---------LBD16 xxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxx>smallRNA(si3)                 <---------LBD16 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------GLK1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ARR11(3)     --------->ANAC58 xxxxxxxxxxxxxxx>smallRNA(fl3)          --------->ARR14(3)     --------->ANAC58 xxxxxxxxxxxxx>smallRNA(s)              --------->ARR11(3)   <---------ATERF1(1) xxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx>smallRNA(i)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(fl3)                           --------- --TOE2(3) <------MYB83          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      >>>>>>>GRF7 ============================bZIP_DOF xxxxxxxxxxxxxxxx>smallRNA(le3)  --------->AHL20(2)  <---------- >DOF2----------------------->TaNAC69(2)<---------ARR14(3)------>NtERF2                 <-----------HVH21   ttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccaataacatatgtttttgttttgtcaggggc  7185800                         <-------GAMYB                        <------MYB46(1)                        <------MYB83                        ----------->GT1                       --------->MYB59                  <---------------AtSPL3                --------->CCA1(2)                                                            <-------               --------->ARR11(3)                                                         <---------AHL20(2)               <---------ARR14(2)    <---------ANAC46                                    --------->AHL20(2) >At4g35610    --------->ARR11(1)    <---------ZAT6                             ---------->DOF2 -RAV1(2)     <<<<<<<<<RAP2.2     --------->ALFIN1         <----------DOF2 ----------->RAV1(1)   atagtttttttgttttagatatggttcggttacaaggtggtgttaactgagtaaggggtctcttttatagcattctccaacatgaagccaattttataaa  7185900                                                      ------>ZmHOX2a(1)                                                  <---------ARR14(2)                                                  --------->ARR14(2)                         <---------LBD16         <---------CCA1(2)                       <---------ATHB12    <---------YAB1                     --------->WOX13(1) <---------AHL20(2)          --------->ATHB12                   <---------ATHB12     --------->AHL20(2)          <---------ICU4                --- --YAB1       <----------DOF2          --------->AHL20(2) <---------MYB52(1)               <---------ATHB12   tgagtaatcgtccatgctttaatcaatcacgggcatgtcaattttattcttatatcctccgtttattcattcattgcataaatcacagagccaaacattt  7186000                                                        <---------AHL20(2)                                                        --------->AHL20(2)                 --------->ANAC46                                                  --------->ANAC58            --------->ANAC58                                      <---------YAB1<---------ARR11(3) --------->YAB1   --------->ARR14(2)                                    <---------CCA1(2)   --------->AHL20(1)    --------->ANAC58                                <---------ANAC46  --------->ANAC58  --------->WOX13(1)  <---------ARR14(2)                      <---------ARR11(3)   --------->YAB1         <---------YAB1   --------->ICU4  <- ------>ANAC55(2)     --------->ARR11(3)--------->WOX13(1)      <---------CCA1(2)--------->CCA1(2)<--   acatgataagtcaaaaacccatgagatgtttgttttgtatatcattcatatcaagaaattttttgtatatcattcatgtcaagaaatgagtatccacaat  7186100  Previous    Next  AGI:  At4g11980.1    Description:  ATNUDT14 (Arabidopsis thaliana Nudix hydrolase homolog 14); hydrolase. Identical to Nudix hydrolase 14, mitochondrial precursor (NUDT14) [Arabidopsis Thaliana] (GB:Q9SZ63;GB:Q941C3); similar to ADP-sugar diphosphatase [Solanum tuberosum] (GB:CAJ55406.1); contains InterPro domain NUDIX hydrolase, core; (InterPro:IPR000086); contains InterPro domain NUDIX; (InterPro:IPR015797) Range:  from: 7183644    to: 7185569    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g11985.1    Description:  pre-tRNA. tRNA-Val (anticodon: AAC) Range:  from: 7185698    to: 7185771    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g11990.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63610.1) Range:  from: 7186090    to: 7189869    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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