Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------ANAC46       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->LBD16            <---------ANAC46                                     ---------->DOF2 ----ANAC46         <-----------RAV1(1)                             ----------->GT1                 < ---LBD16    ------>ZmHOX2a(2)          <---------ANAC46      <---------At4g35610                   <   cgaattgaagcttgatcgagttgtgttgtgttgaatcgagttgtgttgaatcgatttttgagtcatcagattgtaacaaaaagaatagttgcaattttct  7089900                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                  <--       --------->ARR11(3)                                     --------->TOE1(3)                  <---       <---------ARR11(3)                                     --------->TOE2(3)                  ----      <---------CCA1(2)                          --------->TOE1(1)                           <-------    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->TOE2(1)   --------->TOE2(2)  --------->ATHB12  --------->AHL20(2)<-----------GT1         <-----------GT1  ----------->RAV1(2)----------->GT1 <---- ----------DOF2--------->YAB1            <---------ICU4      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<--- ---------DAG2<---------ATHB12     <-----------GT1     --------->AtLEC2        ----------->GT1 <-----   aactttatatatctctatcatttcaccaattggctattttcaatttttacatcggacatacaaacctgaaacctatgtaaattggaaaaatcatttgtcc  7090000                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------------->AGL15                          <---------MYB59                                <---------GLK1(2)                          <---------------AGL15                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------AHL20(2)                                ---------->DOF2 -------->ZAT18          ----------------->AGL1            <xxxxxxxxxxxxxxxxsmallRNA(i) ----->NtERF2            ----------------->AGL2            <---------ATHB12 ---------ZAT18          <-----------------AGL2           <xxxxxxxxxxxxxxxxsmallRNA(i) -------->ABI4(2)        ----------------->AG            --------->WOX13(1)      <---------At4g35610 -------MYB52(1)         <-----------------AGL1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------At4g35610         ----------------->AGL3<---------MYB52(2)       <---------At4g35610 ----->At4g35610         <-----------------AG  --------->MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i) ----HVH21<---------AHL20(1)                 <-----------GT1--------->YAB1       --------->At4g35610 -----DEAR3(1) <<<<<<<<<<GT-3b      --------->GLK1(1)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           x ------ATERF1(1)<-----------GT1    --------->ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxx ----LBD16--------->AHL20(1)       <---------ARR14(2) <-----------HVH21 --------->At4g35610       xxx   ggtgccctgatatatatttttcttcttaccaaaatcggatttgttagtaacaaacctgtcaatcaaagtgtttcagcttctccagcttaaacatcagaaa  7090100                                ----------->HVH21                               --------->LBD16                               <xxxxxxxxxxxxxxxxsmallRNA(i)                             <---------LBD16                            <xxxxxxxxxxxxxxxxsmallRNA(i)                           <xxxxxxxxxxxxxxxxsmallRNA(s)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         <---------ARR14(2)                         --------->ARR14(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <-----------HVH21                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------AHL20(2)               <-----------GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->AHL20(1)           <---------YAB1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------------->AGL15               <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->TOE1(3)                   --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->TOE2(3)                  --------->ICU4 xxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------->TEIL --------->YAB1          ----------->GT1       -------   atgagtgtgtttttagtgtgtcagacaaatccccgtgaaccttgccttaaaaataaaataaaatcactccaaaatagaaattatttttacaaacaaaaaa  7090200                                           ----------->GT1         --------->TOE2(3)                                          --------->DAG2        <-----------GT1                                         ---------->DOF2   <---------YAB1           <---------YAB1             <---------AHL20(2)  <---------AHL20(1)          ---------->DOF2  ---------->DOF2     <-----------GT1 --------->AHL20(2) --------->ATHB51        --------->At4g35610 -->AHL20(2)  <---------YAB1         --------->AHL20(2)  --------->AHL20(2)---------->DOF2       <---   atgaaaaagaatgcttattagtattttccacaattgaaatttaaaaagtatatttcccattatttttcacctaaaaaaaaagcatctaaaaagaagtatt  7090300                                                                                     --------->At4g35610                                                                                     <---------ATERF1(1)                                                                                     <---------At4g35610                                                                                     <---------ZAT2                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                <---------LBD16                                                                         <---------AHL20(2)                                                                         --------->AHL20(2)                                                                         <---------YAB1 ------>NtERF2                      <-------TEIL                                      <---------AHL20(1)              <-----------TBP                                           --------->AHL20(1)            --------------->AGL15                 ---------->DOF2       --------->AHL20(2)     <-----            <----------DOF2  <---------AHL20(2)*TSS                    --------->YAB1--------->ZAT2    ---------->ID1<---------TOE2(3)<---------AHL20(2)            --------->TOE2(3)   ----------->RAV1(2) ------AHL20(2)  ---------->DOF2   --------->AHL20(2)            --------->TOE1(3)  ------->TEIL   ttttttgttcttctctttttaaagttcgtatttttttttaaatgtttatgaagaaagacacaaaaaaccctaaatataatttcacgcagctgcctctctt  7090400                                                                    <------NtERF2                                                                   <---------ATERF1(1)                                                                   ------>NtERF2                                                                  --------->RAP2.3(2)                                                                  --------->RRTF1(3)                                                                  --------->RAP2.3(3)                                                                  --------->RRTF1(2)                                                                  --------->DREB2C(2)                                                                  --------->DEAR3(1)                                                                  <---------ATERF1(2)                                                                  --------->ATERF1(2)                                                                  --------->RAP2.6(2)                                                                 --------->RAP2.6(1)                                                                 --------->RAP2.3(1)                                                                 --------->ERF1                      ------>NtERF2                              --------->ATERF1(1)                     --------->DEAR3(1)                          --------->RRTF1(1)                   <---------At4g35610       --------->YAB1      --------->DEAR4(2)                   ------>NtERF2            <---------ATHB12     <------NtERF2                   --------->LBD16          --------->ICU4       --------->ORA47(2)            <-----         =============HOX2a_HOX2a    ----------->GT1            <---------ATERF1(1)           -------         <------ZmHOX2a(2)        ------>NtERF2       ----------->GT1<---------ALFIN1        --------        <---------ARR14(2)       ----------->HVH21   <------ZmHOX2a(1)                       <-------        --------->ARR14(2)      ------>NtERF2<---------ICU4     ------>NtERF2                -------- <<<<<<<<<TBF1 ------>ZmHOX2a(1)--------->LBD16<---------YAB1  --------->ANAC46              <------- -----DOF2  ------>ZmHOX2a(1)  --------->RAP2.6(2)   <-----------------------TaNAC69(2)      <-------   ttcttcttccgatcctccttccgccgagtgaagccgcgactgtgaaatcatgagaggagtaaaacgcgccgccatctccgaatcgaatgactctcccgtg  7090500                                                                                        ----------->GT1  <-----------GT1                        --------->ANAC55(2)                  --------->LBD16 ----MYB52(1)                            <---------ANAC55(2)                 <---------LBD16 -->LBD16                            ------->TEIL                           <---------ANAC58 ->O2                               <---------GLK1(2)                       <---------LBD16 --TGA1a                         <---------WOX13(1)                         <---------ANAC58 ->TGA1a              <---------TOE1(2)  ----------->GT1                    <---------ANAC46 --ANAC46  <---------MYB52(1)  --------->ATHB12                            <---------LBD16 --O2    <---------YAB1       <---------YAB1   --------->AHL20(2)<---------GLK1(2)<--------P      <--   agtttttccttccgattgttttcgcagttttgttgattgaatctcgtgataaattcagtattgtatcgattctctgtttcgggggtagacgagaaaaatt  7090600                                  <------MYB83                              --------->ATHB12                            <---------TOE2(3)                           --------->YAB1                         <---------WOX13(1)                       --------->ATHB12                     <--------P <---------WOX13(1)                 --------->ATHB12                     <---------WOX13(1)                           <---------YAB1            ---------                    <-------GAMYB <------MYB46(1)                 --------->ICU4       <---------DAG2                   <---------MYB46(3)                  <---------ARR11(3)              <----------DOF2             <---------ANAC58<---------YAB1            <---------GLK1(2)    --------->DAG2  ---------             <---------ANAC58--------->ICU4            --------->ARR11(3)  ---------->DOF2 <---------YAB1  <----------DOF2  --------->MYB55(2)   <---------At4g35610  <---------ANAC58     <------NtERF2  <--- ---------------AG<---------AtMYB61     --------->At4g35610  <---------ANAC58  --------->RAP2.6(3)   gacactttgggtatttcttggtggttgattgatgattggtttagctaagtttctatagattttgggtgattattgaataaagtcggcaactttataatat  7090700                                                                  <-------TEIL                                                           <----------DOF2                                                          <---------ANAC58                                                   <---------ARR11(3)           <-------GAMYB    --------->ALFIN1                        --------->At4g35610  <------ZmHOX2a(2)    --------->ATHB12 >YAB1<---------ANAC46                      <---------At4g35610 --------->AGP1 --------->MYB52(2) >AHL20(2)                            <------ZmHOX2a(1)   <---------ANAC58     --------->MYB46(2) --------GT1                          ==================================HOX2a_HOX2a  <---------YAB1   aacaagttgtgggcattgtgcataatggtatggaactataggatttagctcaaggtatttgctttagatccattaccgagttagttgatgactggtttag  7090800  Previous    Next  AGI:  At4g11790.1    Description:  Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO63659.1); contains InterPro domain Pleckstrin homology-type (InterPro:IPR011993); contains InterPro domain Ran Binding Protein 1; (InterPro:IPR000156) Range:  from: 7090347    to: 7093469    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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