Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->YAB1                                                      <---------------AGL15                      <---                                                      --------------->AGL15                     -----                                                   <-----------GT1                         <---------DAG2                                                <---------ZAT6                             <---------                                            <---------YAB1           <---------MYB46(3)   <---------DAG2 --------->TOE2(3)                        --------->YAB1<---------YAB1                 ---------->ID1 --------->YAB1                          <------ZmHOX2a(2)   --------->ANAC46       <----------DOF2 ------->GAMYB                          --------->ARR11(3)   --------->ANAC58    --------->ARR11(3) -------->MYB46(3) <---------ZAT6       <---------ARR11(3)   --------->ANAC58    <---------ARR11(3)   caaccaaaatcaaaaaccctagagataaaacaaaactcaccagatcataagtgttaccatcataagcaaattggttgaaatgagttcttttcccttttcc  7003100                                 --------->ANAC58                                 --------->ANAC46                                 --------->ANAC58                                 <---------ANAC55(2)                                 --------->ANAC55(1)                                 --------->ANAC55(2)         --------->TOE2(3)    --------->ARR14(2)    --------->LBD16      ------>MYB46(1)   --------->ANAC58      -------->P   --------->ANAC58      ------>MYB83   --------->ANAC46     ----------->RAV1(1)   --------->ANAC55(1) --------->AtMYB61                                                --------->GLK1(1)   --------->ANAC55(2) --------->MYB46(3)                                              --------->ARR14(2)  <---------LBD16  --------->MYB46(3)                                                --------->LBD16 -------DOF2--------->MYB52(1)<---------ARR14(2)                                   <---------LBD16 ---->TOE2(3)  ------->GAMYB <------ZmHOX2a(1)            <<<<<<<<<TBF1        <---------At4g35610  - -DOF2   --------->TOE1(3)  --------->ANAC46           <<<<<<<<<TBF1  ------>ZmHOX2a(1)<---------ARR14(2)   tttacccgtaacattaaccgaatcaccaacaggacacgcatcatcaggcttctcttcttcttcttcgtcttcctcttcttcagcctccggatttgtttct  7003200                                 ------>ZmHOX2a(1)                                --------->TOE2(3)                             <---------ARR14(2)                             <---------ARR11(3)               --------->At4g35610               <---------At4g35610             <---------ICU4  --------->ARR14(2)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <--          --------->YAB1    <---------CCA1(2)                                            --------->ARR14(3)          <---------ICU4--------->LBD16                                                  <---------ARR14(3)    ----------->RAV1(2) ------>NtERF2                                                    <-----------ARR10   ------>NtERF2       --------->ANAC58                                 --------->At4g35610   <------   --------->LBD16     --------->ANAC58            <----------DOF2  <---------ARR14(2)   --------->GLK1(2)  <---------ALFIN1     --------->DEAR3(1)     <-----------GT1       --------->ARR14(2)   --------->ARR11(3)  --------->DEAR3(1)   --------->ANAC46   ------>ZmHOX2a(1)        ------>ZmHOX2a(1)     <---------ARR11(3) ----->ZmHOX2a(1)     --------->SPL7   ------>ZmHOX2a(1)     <<<<<<<<<TBF1               --------->ARR14(2)   tcctccgcctgatcatcatctccctccgccatatcctcatcctccttattcccctttctcttcttcttcctatccgcttccttctcttcaaaatcttcgt  7003300                                    <---------GLK1(2)                                   --------->HSFB2a(1)                                  <---------ATHB12         <---------ANAC58                                ---------->DOF2          <-----------ARR10                              --------->LBD16        ------>NtERF2       --------->DEAR3(1) --------->ARR14(2)        --------->DEAR3(1)                           <---     <---------At5g28300  <---------ARR14(2)  --------->ARR14(2)                   --------->SPL7<--- -------CCA1(2)      ------>ZmHOX2a(1)   ------>ZmHOX2a(1) <---------ANAC58    --------------->AtSPL3 ---ANAC46 <---------SPL7<---------MYB52(1)  <------ZmHOX2a(1)   <---------MYB52(1)<-------TEIL -----   atagcttcaccgtcttacgcttcctccgtttccccaaagattcctcaggactcgccgagtttcttcccttagacctagtaatcggtacatcgtcttcttc  7003400        <---------O2                                                       <---------AHL20(2)        <---------TGA1a                                             <---------ARR11(3)        --------->O2                                         <---------AHL20(2)        --------->TGA1a                                  --------->YAB1<----------DOF2      <---------ALFIN1                           --------->LBD16    --------->ARR11(3)   --------->ANAC58                             --------->HSFC1(1)  <---------AGP1   --------->ANAC58                             <---------HSFB2a(2) --------->ARR14(2)   --------->ANAC46                             --------->HSFB2a(2)<---------CCA1(2)   ----------->HVH21   ------>NtERF2       ==================================HOX2a_HOX2a --------TGA1         --------->DEAR3(1)   ------>ZmHOX2a(1) --------->AHL20(2) --------HVH21   <---------ARR14(2)   <---------ANAC58  <---------YAB1------>ZmHOX2a(2) ---->ANAC46     --------->ARR14(2)   <---------ANAC58--------->YAB1<---------ARR14(2) *TSS   gtcactcgacacttgagcaaatcgccgagacaacaccattgcttcctcttccagaattatcaaaaaattggatctttttatttgtttaatatgagaagtg  7003500                                                                              <---------AHL20(2)                                                            ----------------->AGL1                                       <-----------GT1      ----------------->AG<------------CBF                                   <---------DAG2           ------------>CBF  --------->AHL20(2)                  <---------TOE2(3)<----------DOF2     <----------DOF2        --------->AHL20(1)                 --------->YAB1 <-----------GT1   <----------DOF2      ----------->GT1              --------->YAB1<---------DAG2    <---------CCA1(2)      <---------ZAT6            <-----------TBP <----------DOF2 <---------CCA1(2)--------------->AGL15       ------>NtERF2     <-----------GT1 --------->ANAC46 <-----------GT1    --------->AHL20(2)   gtttctctctgcctatttataatgttttcacttttcacttttcaccctatctcttttcttttaccaatttagtgagaaaaaaaattgtttacatctatga  7003600                                                                 <<<<<<<<<<GT-3b                   <-                                                               <---------YAB1                      --                                                             <---------AHL20(2)                    <-                 <---------DAG2                              --------->AHL20(2)                    --                 <----------DOF2                            <---------AHL20(1)                  -----             ---------->ID1                                 <---------AHL20(2)                 <-----   ----------->GT1                                    --------->TOE1(3)                  --------->AHL20(1)   <---------ANAC58                               <---------MYB52(1)                     <---------AHL20(2)   <---------ANAC55(2)            <---------HSFB2a(2)--------->At4g35610                 --------->AHL20(2)   <---------ANAC46               --------->HSFB2a(2)<---------At4g35610     <---------ATHB12  <-----   <---------ANAC58    ---------->DOF2      <---------YAB1  --------->AHL20(2)  ------->TEIL --------   ctatttcgtaaattagtcccttttttaaagggtttactagaaaattttcattgttagcttaaattatttttcttatacaatgaatatgaaattttttata  7003700        <---------AHL20(2)       --------->AHL20(2)    <---------AHL20(2)                                                       <-----------GT1   --------->AHL20(2)                                                     ------->TEIL   <---------AHL20(2)                                               <---------AHL20(2) --------AHL20(1)                                                  --------->AHL20(2) ------->AHL20(2)                                              --------->AHL20(1) --------AHL20(2)                                              --------->AHL20(2) ------->AHL20(1)                     <---------AHL20(2)       <---------AHL20(1) ---->YAB1                <---------MYB46(3)                   <---------AHL20(2)               <---- ----AHL20(2)----------->GT1    <---------WOX13(1)             --------->ARR11(3)--------->ANAC58 ----YAB1   ----------->GT1<-------GAMYB                       <---------ARR11(3)--------->ANAC58 ->YAB1<---------AHL20(2) ----------->GT1                     --------->AHL20(2) --------->ANAC46   attaattaaataaatgggtaaacttatgtggttaattgattttttttttttgtattttcatcaaatatattaaatgtatttacacaccaaaattatccac  7003800                                                    --------->AHL20(2)                                     <---------AHL20(2)                                    --------->AHL20(2)                                    --------->AHL20(1)                          <---------AHL20(2)        <---------AHL20(2)                      <---------AHL20(2)          <---------YAB1                     <---------AHL20(2)         <---------AHL20(2)                     --------->AHL20(2)         --------->ATHB51                     <---------AHL20(1)         --------->AHL20(2)                     --------->AHL20(1)         <---------ICU4                    --------->AHL20(2)   <-----------GT1                 <---------YAB1     --------->ARR11(3)                <---------AHL20(2)  <---------ARR11(3)            --------->ATHB12        <---------AHL20(1)           --------->ICU4--------->AHL20(2)    --------->ICU4           <---------YAB1<---------AHL20(2) <---------YAB1    <---------ARR11(3)          <---------TOE2(3)         <---------AHL20(2)        --------->ARR11(3)                   -- -----MYB52(2)  --------->AHL20(2) --------->AHL20(2)<---------YAB1             <---------YAB1   ----   taacttgaaattgatgattaaaattaattttatacaaatatattttctaattatttttatagatgatattctactaaaacttatgactgaataagactcc  7003900                                       ---------->DOF2                                 <------NtERF2                                ----------->GT1                                <------NtERF2                        <---------ZAT2                                --------->LBD16                      --------->At4g35610            <----------DOF2    --------->RAP2.6(2)                   --------->ZAT2     --------->At4g35610       ----------->GT1   ------->GAMYB  ------->TEIL -------->DOF2                <---------LBD16   --------->MYB46(3) --------->ANAC46                -- -->ZmHOX2a(1)        --------->ARR11(3)--------->DAG2   <---------YAB1  ---------->DOF2           <-   taaaatcagatgggctttataaaacatattgggccggaaaaaaaagtgtaacagacatcatctttgtacccagcacaaaggaaaatggccataaactaca  7004000  Previous    Next  AGI:  At4g11560.1    Description:  bromo-adjacent homology (BAH) domain-containing protein. similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62823.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) Range:  from: 6999890    to: 7003487    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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