Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <xxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                     <---------ARR14(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                ----------->GT1      --------->GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          ---------->DOF2      ----------->GT1      --------->RVE1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     ------>MYB83            ---------->DOF2  ----------->GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ------>MYB46(1)      --------->ANAC58    --------->LBD16xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>YAB1              --------->ANAC58   ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(i)       ------ ------ATHB12           --------->MYB52(1)  <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --->WOX13(1)       ---------->DOF2--------->AHL20(2)--------->ARR14(2)--------->ANAC46<------ZmHOX2a(1)   tcaaaccaaatgtaaagaaaactaaagaacgaaaagataaatttaaaccggaaaaaatccgattagaagctagacgagacacaatagaaggacgatgaaa  6955200                                                              --------->DEAR3(1)                                                              --------->AtMYB61                                                              <---------ALFIN1                       --------------------->WRI1            <---------MYB55(2)                   --------->DEAR3(1)                        --------->MYB46(3)                   --------->RAP2.6(2)                     --------->AtMYB61                   ------->GAMYB   ------>NtERF2--------->ANAC58                  --------->DEAR3(2)   --------->At4g35610<---------MYB55(2)               <---------WRKY12    <-----------HVH21    --------->ORA47(1)               <---------WRKY38(1) ----------->RAV1(1)  ------>NtERF2            <---------DEAR3(1)              --------->WRKY18(1)  <---------RAP2.6(3)  <---------ATERF1(1)     --------->SPL7             <-----------HVH21    --------->DEAR3(1)   --------->DEAR3(1)       <---------ORA47(1)        --------->ANAC58          ----------->HVH21   --------->DEAR3(2)       --------->MYB52(1)        --------->ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------SPL7      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->ANAC58    ---------->DOF2              <---    --------->CCA1(2)  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->At5g28300<-----------HVH21   <---------ARR11(3)  <----------DOF2 <---------At4g35610--------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxsmallRNA(le3)--------->MYB46(3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->MYB52(1)    ---- ->TEIL --------->ANAC46     ---------->DOF2    --------->ANAC46 --------------->AGL15        -------   ctctagatataagccagtcaaccgcctttgtaaaagccgacagatgccagacgctagccgaccaccaccgtaaagagaaacggacggtgtcaaaactaaa  6955300                                                                                              -------                                                                                            <--------                                                                                            ---------                                                                                          <---------ARR14(2)                                                                                          --------->ARR14(2)                                                                                       --------->ANAC58                                                       --------->ANAC58                --------->ANAC46                                                ----------->GT1                        --------->ANAC58                                              ---------->DOF2                        --------->MYB52(1)       <---------ICU4                   <----------ID1 --------->ANAC58      --------->MYB52(2)   <--      <---------ATHB12       --------->MYB52(1)--------->DAG2                <---------MYB46(3)  <--- ------At4g35610       ---------->DOF2  --------->ANAC58         --------->GLK1(2)  <---------WRKY12 ----->ZAT2          --------->ANAC58   --------->ANAC58        <---------GLK1(2)   <---------WRKY38(1) --->DOF2            --------->ANAC58 ---------->DOF2---------->DOF2  --------->MYB52(1)------->GAMYB   gctggccaaacattgccataaaaacgaaagttatcggataaaaagccaaaaagtcaaaagccaaaagattctaaacggatagttggacaacggaactacc  6955400                                     --------->AHL20(2) -->MYB52(1)                       <---------AHL20(2)     --------->ANAC46 -MYB52(2)                         --------->AHL20(2)   <---------ALFIN1      --------->ATHB12 >MYB46(3)                     --------->HSFB2a(2)     <---------ZAT18       --------->ICU4 -------MYB52(1)           <----------DOF2  <------ZmHOX2a(1)                <---------YAB1 ----GAMYB       --------->YAB1<---------HSFB2a(2)     --------->ZAT18    <---------YAB1         <---   gttgccagagaaaaaactctaatgacttcctttctaaaaaaatataggagagggaagtccacccgattagtggaatttgattattgaacaaaaccagttt  6955500                                                                              <---------At4g35610                                                                              --------->At4g35610                                                        <-----------GT1    --------->At4g35610              --------->YAB1         --------->YAB1----------->GT1    >>>>>>>>>TBF1              ----------->GT1  ----------->GT1    --------->DAG2<---------HSFB2a(2)         ------------>CBF     <---------TOE2(3)  ---------->DOF2--------->HSFC1(1)       ---------->ID1   <----------ID1 --------->AHL20(2)       <---------HSFC1(1)              *TSS --------GT1<------------CBF---------->DOF2  <----------ID1     --------->HSFB2a(2)        <---------ALFIN1   ttccattttttcgcaattgtaacaaaaaaacaaaggtaaaaataaaaacgaaaaagtaaaacccttcgagaagaagaagcagcgcataaacccccatcgg  6955600                                   <---------ETT(1)                                   --------->At1g77200                                   ------->GAMYB                                  --------->DEAR3(2)                            ------>ZmHOX2a(2)                          --------->ARR14(2)                          <---------ARR14(2)                          --------->ARR11(3)                          <---------ARR11(3)                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)               <---------GLK1(2)                     --------->GLK1(1)              --------->At4g35610              <---------ARR11(3)                    <---------ARR14(2)              <---------At4g35610              <---------GLK1(2)                    --------->ARR14(2)     --------->ARR11(3)                 --------->At4g35610                    <---------ARR11(3)     <---------ARR11(3)                 <---------At4g35610                    --------->ARR11(3) ---------->DOF2             ----------->GT1   --------->ARR11(3)   ccagagaaaatgagcaatttgggatctcgatcttctaccgacaaagagcttatcagcttctcaaggttttggttaatttgagctacagatttttggatta  6955700                                              <---------MYB52(1)                                            <---------ANAC58           <---------At4g35610                                            ----------->GT1    <----------DOF2                                            <---------ANAC58  ------>ZmHOX2a(2)               <---------HSFC1(1)    <---------TGA1a         <------ZmHOX2a(2)               --------->HSFB2a(2)   --------->TGA1a        --------->AGP1                         --               <---------HSFB2a(2)   =====================================bZIP_DOF                ---               --------->HSFC1(1)    <---------O2           --------->ARR14(2)                  <----     --------->ARR11(3)              --------->O2           <---------ARR14(2)             >>>>>>>>>>WRKY6     <---------ARR11(3)      --------->HSFB2a(1)            <---------AGP1                 >>>>>>>>>>WRKY11    --------->GLK1(1)        <---------HSFC1(2)             <---------ARR11(3)            --------->WRKY45   <---------ARR11(3)        --------->HSFC1(2)             --------->ARR11(3)            --------->WRKY38(1)  --------->YAB1             <---------HSFB2a(1)            <-----------ARR10             --------->WRKY12   tcgatgatatctagcttcgagaaattttcgaattttctcacatgaggcgttattttggaacagatctttgttgagctattggctcgaactagttgactaa  6955800                                                                  <---------MYB52(1)                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                             --------->ARR11(3)                                                             <---------ARR11(3)                                                             --------->ARR14(2)                                                             <---------AGP1                                                            <------ZmHOX2a(1)                                           --------->ARR11(3)<---------ARR14(2)                                           <---------ARR11(3)--------->GLK1(2) ------->CCA1(2)                    --------->ANAC58  --------->ANAC46 ------>ARR11(3)  <---------ANAC46  --------->ANAC58  --------->ANAC58                --------->YAB1 -----TOE2(3)   <---------ANAC46  --------->CCA1(2)   --------->ANAC58            --------->AHL20(2)   gatttagaagtcgattttttgtgtatattgtgtaagataagcaaatgtcttcttctacgaaaggatctgttaagaagagttcgattaaacatagttgcaa  6955900                             <------ZmHOX2a(2)                  --------->HSFC1(2)                  <---------HSFC1(2)--------->ICU4                  <---------HSFB2a(1)--------->YAB1                  --------->HSFB2a(1)<---------ICU4             <---------------------WRI1 <---------ICU4     <---------TOE1(3)      --------->ARR11(3)     <---------TOE2(3)      <---------ARR11(3) --------->At4g35610    ---------->DOF2<---------YAB1                                          ------ <---------At4g35610<----------DOF2 <---------YAB1                    <---------HSFB2a(2)      <----- --------->ZAT2=====================HOX2a_HOX2a                       --------->HSFB2a(2)    -------- <---------ZAT2<------ZmHOX2a(1)  --------->YAB1         <---------YAB1               ---------->DOF2   cttagctgaggttaagaggaagctttcaaagatcagtgatcatcattcacatgtagagtatgcttatgccttccagagggacaatagagaaagagtagat  6956000                            <---------ANAC58                            <---------ANAC46                            <---------ANAC58             <---------PCF2                           <-------TEIL          <-----------RAV1(1)            <---------ARR14(2)               --------->ATHB12 --->ARR14(2)   ------>ZmHOX2a(1)          <---------MYB52(1) ----ARR14(2)  --------->TOE2(3)         <---------MYB46(3) ------>ZmHOX2a(2)                  <----- --->ARR10  --------->ARR14(2)    <---------GLK1(1)   <---------ANAC46           ---------->DOF2   actaggttgagtcaaatcctcagtagggatgcgttgatatcagccgttgatttgttgtgggatcgctcgggttttgtttcactgaaagaagggaattttg  6956100  Previous    Next  AGI:  At4g11440.1    Description:  binding. similar to SAMC1/SAMT1 (S-ADENOSYLMETHIONINE CARRIER 1), S-adenosylmethionine transmembrane transporter/ binding [Arabidopsis thaliana] (TAIR:AT4G39460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62825.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) Range:  from: 6955596    to: 6958548    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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