Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ----------->GT1                                                                ------>MYB83                                                                --------->MYB52(1)                                                           >>>>>>>>>>WRKY43                                                           <-----------GT1                                                     <-------TEIL     ----------->GT1          --------->DAG2                        ------->GAMYB   ------>MYB46(1)                  ----         ---------->DOF2  --------->TOE2(3)    --------->MYB46(3)    ------->TEIL        <---------ANAC58 -------->ANAC58          --------->YAB1 --------->ANAC58  >>>>>>>>>>WRKY38              <---------ANAC55(2) -------->ANAC46    --------->ZAT6       --------->ANAC58  >>>>>>>>>>WRKY26              ----------->GT1 -------->ANAC58  <-----------GT1      --------->ANAC46   --------->WRKY12               --------->ANAC55(2) ----REM1(2) ----------->GT1           <---------ALFIN1   --------->WRKY38(1)            <---------ANAC58   acacacaaaaaaaaagtgtttaacacaatctcaattcatacacaccctaaccacatccatttgaccaaatggatgttaaaacgaaaacatttcgtaactt  6952000       --------->ANAC46                                                           --------->MYB52(1)       --------->ANAC58                                              --------->MYB46(3)      <---------ZAT18                  --------->ANAC46         ----------->GT1--------->ANAC58     <---------ALFIN1               --------->ARR14(2)     --------->DAG2      --------->ANAC58    --------->ZAT2    <-----------------AGL1         --------->ANAC58<------------MYB.PH3(2)    --------->At4g35610             <---------ARR14(2)    ---------->DOF2      --------->ANAC46 ---->P--------->ANAC58       ----------->GT1        --------->ANAC58<---------MYB52(2)   accatcagcacgcttcaacgcgttctctggtttggcaaaattcgccatgtttcagacgaaaaaagctagtaacaaactctaacgcaagggacactctcaa  6952100                                                                          ---------->DOF2                                                   ---------->DOF2--------->ARR11(3)                                                 --------->LBD16  <---------ARR11(3)                                             --------->GLK1(2)   <---------RVE1(1)                                             <---------ARR14(2)  <---------GLK1(1)                                             --------->ARR14(2)  --------->GLK1(1)      <-------TEIL                                            <---------GLK1(2)   <---------ARR11(3)   --------->At4g35610                                     <------ZmHOX2a(2)          --------->ARR11(3)   <---------At4g35610                                    --------->ARR11(3)       --------->YAB1         --------->ANAC58                                    <---------ARR11(3)      <---------ATHB12        --------->ANAC58                ---------->DOF2    --------->GLK1(1)      --------->WOX13(1)  <------ZmHOX2a(1)  ----   ttagcctgaaaaacacagagaagcgattttgttacagagatcaccagaatccgaaaaacccaatcagatatctcagaaaaggatggaagctacatagacc  6952200                                                               ----------->RAV1(2)                                                        <-------TEIL                                                       --------->CCA1(2)                                                       --------->ARR14(1)                                                      <---------GLK1(2)               <------ZmHOX2a(2)                                                      --------->ARR14(2)             --------->AGP1                                                      --------->ARR11(1)       >>>>>>>>>MYB98                       <-------TEIL                   <---------ARR14(2)   --------->TOE1(3)                --------->TOE1(3)                    <---------HSFB2a(1)   --------->TOE2(3)        -                --------->TOE2(3)                 ---------->DOF2----------->HVH21   <---------ARR11(3) ------->GT1 <---------ALFIN1        --------->YAB1 ----------->ARR10   <---------ALFIN1        -----   agaaaaaacttgcccaaaccctaaattcatttcatagaatcaaaataacacagaaagattcgataacctgacccaaaccctaacccagatcaattcaatg  6952300                           --------->MYB46(3)                      --------->CCA1(2)                      <------ZmHOX2a(2)                     <---------ARR11(3)                     --------->AGP1                                           ---------->DOF2                     --------->ARR11(3)                                   --------->At5g28300                    --------->GLK1(1)                          -------->P --------->LBD16        ---------->DOF2    <---------ATHB12               <------ZmHOX2a(1) --------->REM1(2) -------->CCA1(2)   <---------GLK1(1)                 --------->TOE1(2)  ----------->GT1 ---->YAB1--------->DAG2 --------->WOX13(1)     --------->RAP2.6(2) --------->REM1(2)              --   agatttgattaaaaggcagtagagatccaatcactgatgcaagaacagagccgaaacttaggactaaccttgtagccgtgaaaagagaagactgataaga  6952400                                                <---------YAB1                                          <---------YAB1                <---------ICU4                                          <---------TOE2(3)             --------->ARR14(2)                                         --------->AHL20(2)             <---------ARR14(2)                                         --------->YAB1             <---------------AGL15                                         <---------AHL20(2)         --------------->AGL15        <---                              <---------GLK1(1)<-----------GT1     <-----------------AGL1    <-------                 --------->ANAC58 --------->HSFB2a(2)             <-----------GT1        ------>ZmHOX2a(1)            --------->At4g35610<---------ARR14(2)                <-----------GT1    --------->YAB1    ---------->DOF2   --------->ZAT6    *TSS <---------YAB1  --------->AHL20(1)    <---------ATHB12 ------->CCA1(2) --------->ANAC58<---------ANAC46            <---------AHL20(1)  --------->GLK1(1)   gagacgagaagcgaagcggaagcaactctagggtttctggtattaatattatcgttctacatatatattacccatatttgcagaaatcatcctattttct  6952500                                                                                              <------                                                                                           <---------AHL20(2)                                                                                 <------ZmHOX2a(2)          ----------->HVH21     <---------ZAT6                                  <---------ARR11(3)<-- --------GT1          <-----------GT1                                           --------->ARR11(3)--- --AHL20(2)          <-----------GT1  ----------->TBP                         <XXXXXXXXXXXXXXXXXXXXMIR863-5P   tacggtttcgaaatgaccccgttttatcttcttagtgtttataaaacccaatttgtctaatactgggatgtgattcaattgagatcaacaaaatttatgg  6952600                                                          ------------>CBF                         --------->ARR14(2)        <---------AHL20(1)                         <---------ARR11(3)        --------->AHL20(1)                         <---------ARR14(2)       <---------------AGL15    <-----------GT1              <---------YAB1                    --------->AHL20(2)    --------->YAB1   <-----------GT1 ---TOE2(3) --------->YAB1<-----------GT1       --------->YAB1     <----------DOF2--------->AHL20(2) -------GLK1(1)     ------------>CBF         --------->YAB1 --------->WOX13(1)    <---------AHL20(2) ------>GLK1(1)    <-----------GT1          <---------AHL20(2) --------->AHL20(2) <---------YAB1 <---   atttcattttcgaattatcatttacaatatactctctatattttgtttaataatatttttagcaattaactttgatatttctatattattaactaaacat  6952700                                  <---------ANAC55(2)                                        --------                             <---------ICU4                                              <---------ICU4                          <---------AHL20(2)                                        --------->AHL20(2)                  ----------->RAV1(1)                                        <---------WOX13(1) -----      --------->AHL20(2) --------->AHL20(2)                                --------->ATHB12<---------YAB1    ----------->GT1  <---------ARR11(3)                                 <------------CBF --------->YAB1 ----TEIL        --------->MYB46(3)  --------->AHL20(2) <-------TEIL ------------>CBF  --------->ARR11(3)   acatttaagtaaatagccaacaacatattaaatattacataaaatgccactacaaaaattcatttcaaaaaaacaattgatttacataaaatcatgaaag  6952800                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                             --------                                                                                             --------                                                                                         --------->WOX13(1)                                                                           <---------ARR14(2)<-------  --------->AHL20(2)    --------->ATHB12                                  <---------GLK1(2) <--------  <---------AHL20(2)  <-------GAMYB       ---------->DOF2       ----------->GT1         <---------AHL20(2) -->DOF2       ---------->DOF2     --------->ATHB12          --------->DAG2--------->ARR14(2)<------- ------>GT1 --------->At5g28300   <---------YAB1            ---------->DOF2--------->GLK1(2)---------   gtaaaaaattcaactgtaaaagggtgttattggtttatgatttcaaaagagttttaatgacttaaagtgtaatatagaatctgatgttattcaattaaat  6952900  Previous    Next  AGI:  At4g11420.1    Description:  EIF3A (eukaryotic translation initiation factor 3A). Identical to Eukaryotic translation initiation factor 3 subunit A (TIF3A1) [Arabidopsis Thaliana] (GB:Q9LD55); similar to Eukaryotic translation initiation factor 3 subunit A (eIF-3-theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) (GB:Q40554); similar to unnamed protein product [Homo sapiens] (GB:BAD18434.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17482.1); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 6947471    to: 6952440    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g11430.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to hypothetical protein DDBDRAFT_0205727 [Dictyostelium discoideum AX4] (GB:XP_641800.1); contains domain PRICHEXTENSN (PR01217) Range:  from: 6952794    to: 6954237    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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