Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->ARR14(2)                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                                                --------->GLK1(2)                                     --------->AHL20(2)         <---------ARR14(3)                                --------->AHL20(2)              <-----------ARR10                             --------->GLK1(1)                  --------->ARR14(3)                          ------>ZmHOX2a(1)               --------->ANAC58                        ---                          --------->LBD16       --------->TOE2(3)        <----------DOF2          ---      --------->LBD16   ----------->RAV1(2)   <-------TEIL--------->ANAC58          <---------ARR11(3)   gtctcttccccaataccacttgatgctcctgaaatcaaataaaacatatacatcaaaaaccagcaaaatcttctcctttgcttcaagatgtgttcttaac  6946900                                            --------->MYB46(3)                                         --------->MYB46(3)                                        ------>MYB83                             <---------AHL20(2)                   <---------MYB52(1)   ------>MYB46(1)                      <---------ARR11(3)        ----------->GT1           <---------ARR14(2)                         --------->AHL20(2)       --------->DAG2        --------->MYB52(1)                            --------->ANAC58      ---------->DOF2   ----------------->AGL2                             --------->ANAC58 ------>ANAC58    <----------DOF2 --------->ARR14(2)              <------ZmHOX2a(2) ------>ANAC58    ------>ZmHOX2a(1)    --------->ANAC46         <------ZmHOX2a(1)--------->AHL20(2)   aagcctgataaagtttaatcctttagtccattaacagataccaacaacaacttgagttcaagggcaggatcaaaaccaagaaattaaactatagactgaa  6947000                                           >>>>>>>>>TBF1  >>>>>>>>>TBF1                                        >>>>>>>>>TBF1  >>>>>>>>>TBF1  --------->ARR14(2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------YAB1                                     >>>>>>>>>TBF1  >>>>>>>>>TBF1     <---------ARR14(2)           --------->DAG2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ----------->TGA1          ---------->DOF2         >>>>>>>>>TBF1  >>>>>>>>>TBF1       <------ZmHOX2a(1)    --------->YAB1           --------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <------ZmHOX2a(2)         --------->ANAC46 >>>>>>>>>TBF1  >>>>>>>>>TBF1 ----------->HVH21  --------->ARR11(3)         --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ARR11(3)   --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   catagatcataaaaaagttgaaaacatctgcacgaagaagaagaagaagaagaagaagaagaagaagaagaggacctgtgacgatagcagtgagaccagt  6947100                                                                            <-------MYC3                                     --------->ZAT2             --------->AtMYB61                         --------->At4g35610             <----------DOF2    ------->MYC3                         <---------At4g35610      --------->ARR14(2)     ----------->RAV1(1)                         <---------ZAT2           <---------GLK1(2) ---------->DOF2               ---                         --------->ZAT2          <---------At4g35610--------->DAG2          <--------           --------->ATHB12  --------->ALFIN1  <-----------RAV1(2) ---------->DOF2       <-----------GT1   accatcgattccatgagtgacttcttcagctgtggaacgagcagagaacccagatgctcctttccaccaaaaaggccacatgtttgttttgtttctatct  6947200                                          <---------ZAT2                                     --------->ANAC58                     >>>>>>>>>>WRKY26                                     --------->ANAC58                     >>>>>>>>>>WRKY38                                    ------>MYB83                          >>>>>>>>>>WRKY6                                    ------>MYB46(1)                       >>>>>>>>>>WRKY43                                   --------->MYB52(1)                     >>>>>>>>>>WRKY11                                  --------->AtMYB61                       <---------WRKY18(1)                                 <---------MYB55(2)                      --------->WRKY12                                 <---------MYB52(2)                      --------->WRKY45                                 --------->MYB46(3)                  --------->DAG2                             <---------MYB59                        ---------->DOF2  <---------AHL20(2)                             ------->GAMYB--------->At4g35610--------->ANAC46       --------->AHL20(2)             ---------->DOF2 --------->AtMYB61             --------->ANAC46      --------->AHL20(2)            --------->AHL20(2) ------>MYB83                <---------ALFIN1      --------->YAB1  --------->SPL7            --------->MYB46(3)           --------->ANAC46--------->WRKY38(1)<-------- ------------>AtSPL8   --------->TOE2(3)  <---------At4g35610--------->ANAC58   <---------ATHB51 -CCA1(2)   <---------AHL20(2) ------>MYB46(1) <---------YAB1--------->ANAC58   <---------ATHB12   --   tctgtaccacaaaattaaagtctaatctcaaccaaaccaacgctagctgatgatcaaacacacaccctagtaaagttgaccaattataaaatttcttttt  6947300                                                   --------->GLK1(2)                                                  <---------GLK1(2)  <---------ICU4                                              --------->ZAT14       --------->AHL20(2)                                            --------->ANAC58        <---------AHL20(2)     <----------DOF2                   --------->ANAC58             --------->ICU4  <---------ARR11(3)                   --------->ANAC58<---------ANAC46  <---------At5g28300   ------ --DOF2                     *TSS       --------->ANAC46----------->GT1  <-----------GT1       ------- ------->LBD16             --------->ZAT14  --------->ANAC58 ---------->DOF2   <-------TEIL   -------   ccgagagcttttgcaatgtgcccatgctctgttctcaaaacaaggcactgaagaatctcgtataaaagtattaattacagtttcatttgttttcttcctt  6947400                                                                         <------MYB46(1)       --------->CCA1(2)                                                 <------MYB83  --------->LBD16 --------->ARR11(3)                                  >>>>>>>>>SARD1 >ZmHOX2a(1)      <---------ARR11(3)<---------AHL20(2)                >>>>>>>>>CBP60g -->TOE1(3)   ---------->DOF2       <-----------GT1            ----------->GT1   <---------MYB52(1) -->TOE2(3)--------->YAB1    --------->ANAC46           ----------->GT1 --------->MYB59   aatccagagataagaataaagatgtttgtatacactatttacatttttgatacaaatgttgttaaatgtgaaatttggtattcgtttattgttcttcata  6947500                                        --------->At4g35610                       <---------AHL20(2)                             --------------->AGL15                                --------->AHL20(2)             <---------MYB52(2) ---------->DOF2                                   --------->AHL20(1)           --------->WOX13(1)<---------------AGL15                               --------->AHL20(2)        --------->ANAC58    <---------ANAC58                      --------->At4g35610        --------->ANAC46    <---------ANAC46           <---------TOE2(3)    ----------->GT1        --        --------->ANAC58    <---------AtLEC2      <-----------HVH21   ---------->DOF2          ------    <---------ICU4          <---------ANAC58 <---------YAB1       <---------At4g35610  <----------ID1    --------->YAB1   --------->DAG2     <---------At4g35610    <---------At5g28300<---------AHL20(1) --------->YAB1     ---------->DOF2    --------->GLK1(2)      <-----------GT1   XXXXXXXXXXXXXXXXXXX>MIR773B*   aactaataataagcaattaacaaaaagtttgcttgaaagagaagctgatcaatgtcaaaggtttttacagcagaaagttggaaataaattggacaaacaa  6947600         --------->DEAR3(2)         --------->MYB46(3)        -------->P        ------>MYB46(1)        ------>MYB83       --------->MYB52(1)    --------->CCA1(2)    <------ZmHOX2a(2)   <---------ARR11(3)                              <---------MYB52(2)   --------->ARR11(3)                     --------->REM1(2)   --------->ARR14(2)                     --------->ZAT14   --------->AGP1                         <---------ZAT14   <---------ARR14(2)    --------->MYB46(3)   ----------->GT1                    --------->YAB1 -------->DOF2   ----------->GT1         --------->ALFIN1                  --------->ARR11(3)  ------ ---->DOF2------->GAMYB<-----------GT1 <---------ANAC46                    <---------ARR11(3)<-------   agaaagatccaaccgaagaaggaaataacaactctctctgggtgtgtagagcaaaaaacgagtctaacatgttttaaaatctttcataaaaacttataaa  6947700                                                                             <----------DOF2                                                    ----------->HVH21       --------->TOE2(3)                                                  <---------ANAC46 --------->LBD16                                      ---------->DOF2  --------->ICU4       <---------DAG2                          <-----------RAV1(2)   --------->ZAT18--------->ARR14(2) ---->DOF2   ---------->DOF2  --------->ALFIN1  --------->ZAT14<---------ARR14(2) --YAB1 --------->YAB1  --------->CCA1(2)       <---------ZAT14--------->GLK1(2)   agatgagcaatcttcaaaagaagaagagacaggtttgggctaaagaagagtgctgtgatgttgaaaatccagagataacctttttcattcattcccatgg  6947800  Previous    Next  AGI:  At4g11410.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G23430.2); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96367.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 6944913    to: 6947328    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g11420.1    Description:  EIF3A (eukaryotic translation initiation factor 3A). Identical to Eukaryotic translation initiation factor 3 subunit A (TIF3A1) [Arabidopsis Thaliana] (GB:Q9LD55); similar to Eukaryotic translation initiation factor 3 subunit A (eIF-3-theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) (GB:Q40554); similar to unnamed protein product [Homo sapiens] (GB:BAD18434.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17482.1); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 6947471    to: 6952440    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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