Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <------ZmHOX2a(1)                                      <----------DOF2                         xxxxxxxxxxxxxxxxxxxxxxx                                    xxxxxxxxxxxxxxxx>smallRNA(i)             <---------TOE1(3)                                <---------ANAC58                             <---------TOE2(3)                                <---------ANAC58                      <-----------------AGL3                              <-----------GT1                         ----------------->AGL3                             <---------YAB1                        <---------GLK1(1)                           --------->ATHB51                        --------->GLK1(1)                           <--------HAHB4                        <------ZmHOX2a(1)      <----------DOF2                           <---------ICU4                      <---------TOE1(3)<---------ARR14(2)   <----------DOF2        <---------YAB1    ------>ZmHOX2a(2)  <---------TOE2(3)<---------GLK1(2) ----DOF2                 --------->ICU4    ============================HOX2a_HOX2a    <---------DAG2   ttcttcttttgtttcagttttggttcccattattacttggctttgatctcataagttttttttttaaggaaacccatttaaggattctacctttggagaa  6920100                                            <---------TOE2(3)                                           <---------AHL20(2)                                           --------->YAB1                                           --------->AHL20(2)                                         <---------YAB1                                       -------->ATHB1                                       <---------ICU4                                            <---                                      --------->AHL20(1)                                        -----                                      <---------AHL20(2)                                 --------->MYB46(3)                                      <---------YAB1                       ------>ZmHOX2a(1)    <----                                      --------->AHL20(2)                  <---------ANAC46--------->AtMYB61                                      --------->ICU4                 <------ZmHOX2a(1)  ------>MYB83                                    <---------ICU4                 <---------TOE2(3)    ------>MYB46(1)       --------->YAB1         --------->TOE1(3)                 <---------AHL20(2)     --------->ANAC46 --------->GLK1(2)            --------->TOE2(3)    <---------YAB1---------->DOF2      --------->MYB46(3) >smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------TOE2(3)--------->TOE2(3)  <-------   gagaatttataaaaacttgacaaaaactctaaccttcaaaattattaatatttgttattaagaaatttaaaggattccttataaaaaacccaccaatgga  6920200                       --------->ATHB12                     --------->ANAC55(2)                     <---------ANAC55(2)                                       <-------TEIL          <-------TEIL--------->ICU4                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->ARR14(2)                                                  <---------DEAR3(2)        <---------ARR11(3)                                                  <------MYB46(1)        --------->AGP1<---------YAB1                                        <------MYB83        <---------ARR14(2)                  --------->YAB1                 --------->MYB59        --------->ARR11(3)      --------->TOE1(2)                        <---------MYB52(1)  <----------DOF2 --------->ARR11(3)       <---------ATHB12            <------MYB46(1) ------GLK1(1)    <---------ARR11(3)     ------>MYB83                  <------MYB83 ---->ARR14(2)  <---------YAB1  <---------LBD16                        <---------DEAR3(2) -----ARR14(2)  <---------TOE2(3)        ------>MYB46(1)              --------->MYB59 --ATHB12<------ZmHOX2a(2)     ----------->RAV1(2)  <----------DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   tttgctttaagatccattaagatacttattggaacctggaaccaaatcaaaactcttttttttttttttggttcggttcggttcagttccagttttatgg  6920300                           --------->ARR11(3)                            ---------->DOF2                           <---------ARR11(3)                          --------->YAB1                           <---------AHL20(1)                         <---------YAB1               --------->At5g28300                                  --------->YAB1              ----------->GT1                                       <---------ICU4           --------   --------->TOE2(3)       --------->AHL20(1)                      --------->ICU4           <-------TEIL   --------->TOE1(2)  ----------->GT1                        <-----------GT1         <---------HSFB2a(2)   --------->TOE2(2) ----------->GT1               <---------YAB1<---------ICU4 <---------ALFIN1   caaaacctaagtttaggggtaaattggaaaatattcaaaagttttagccaaatatcaaagtttttactaattatcaaaagacacactcgagaaattcata  6920400                                                                  --------->ATERF1(1)                                                                  <------NtERF2                                                             --------->DEAR3(1)                                                            --------->DEAR3(2)                                                            --------->ATERF1(1)                                                            <---------At4g35610                                --------->MYB52(1)      <-----------TGA1                      <---------ZAT18           --------->ANAC58 ------>NtERF2                  *TSS                      --------->ZAT18   <-----------HVH21   <---------LBD16              <---------MYB52(1)                    --------->PCF2      <-------GAMYB   <-----------HVH21               <-----------TGA1             <---------YAB1  ------------>CBF   --------->ANAC58<---------ANAC46        <-----------HVH21 ->YAB1 <----------DOF2  --------->ANAC46<---------MYB52(1) --------->At4g35610        --------->ANAC46   aatgggctaacttttatcagagagcccactaaacaatcggcccgttagccaagaaaatcgtcaccggcgtcttccattccaacatttctccgtcatcgtc  6920500                                                                               --------->MYB59                                                                              <-----------RAV1(2)                                                                            <-----------HVH21                     --------->ZAT18                              --------->HSFC1(2)                  <---------ANAC58                                <---------HSFC1(2)                  <---------ANAC46                  <---------ARR11(3)    <---------MYB46(3)        -                  <---------ANAC58                  --------->ARR11(3)    <---------DEAR3(2)      ---       <----------DOF2                           --------->AHL20(2)    <-----------HVH21---------->DOF2   tctctctctcttttttttttgtgtgtgcaaaacgtctctctctctgtctcataaaatctcagagaagaaacatcgtcgggtcaggtcgaagaaaggagag  6920600                                                            --------->ANAC58                                                            --------->ANAC58                                                       <---------At4g35610                                                       --------->At4g35610                                                    --------->LBD16                                                  ----------->RAV1(2)                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                                <---------------------WRI1                                               <---------ARR14(2)            --------->ARR14(2)                 --------->ARR14(2)          <---------YAB1                       --------->ARR11(3)                              <----- --------->ATHB12                              <---------ARR11(3)                    ----------->GT1 -------->ICU4                                --------->GLK1(1)   --------->ARR11(3)<---------TOE2(3) ------>CCA1(2)               --------->ANAC46<---------GLK1(1)   <---------ARR11(3)<---------TOE1(3)   aaatgagtggtcacgattcgaaatacttctccacgacgaagaagggagagatccctgagctcaaggaagagcttaattcccagtataaggtttttttttt  6920700                                               --------->ATHB51                                               <---------ICU4                                              <---------YAB1                                          ------>NtERF2                                          --------->LBD16                    ========================                                         --------->ANAC46                    ------>ZmHOX2a(2)                                         --------->ANAC58                  --------->ARR11(3)                                 ------>ZmHOX2a(2)                         <---------ARR11(3)                               <---------AGP1 --------->ICU4  ------>ZmHOX2a(2)                               <---------ARR14(2)             ========================HOX2a_HOX2a                               --------->ARR14(2)            <------ZmHOX2a(2)                               <---------ARR11(3)       --------->YAB1<---------ETT(2)                               --------->ARR11(3) <-----------GT1     <---------MYB46(3)                           ------->MYC3  --------->ANAC58   --------->ARR11(3)      --------->YAB1       <-------MYC3 ------>ZmHOX2a(2)   <---------ARR11(3) ------>ZmHOX2a(1) ------GT1      ---------->ID1<---------CCA1(2)<--------HAHB4=========================HOX2a_HOX2a   cttcttaatcttactcttgtctcattccatgtggatctgtgatccgccattattacattcacgatctctcggtcgatgatccttctctccttgtaattta  6920800                                   --------->HSFB2a(2)                                   <---------HSFB2a(2)                            --------->ZAT14                            <---------ZAT14                        ------>ZmHOX2a(2)                       --------->CCA1(2)                       <------ZmHOX2a(2)                      <---------ARR11(3)                      --------->ARR11(3)                      --------->ARR14(2)                                                         <---          <---------------AGL15   <---------LBD16                                               <----          --------------->AGL15 <---------AGP1                                                <------    ------>ZmHOX2a(1) <---------ARR14(2)                                                      <------    ===========================HOX2a_HOX2a                                <---------ANAC46    <------    ==========================HOX2a_HOX2a                         <---------ANAC46       --------->HSFB2a(1)   --------->TOE1(3)  --------->AGP1                              <---------ANAC58       --------->HSFC1(2)   --------->TOE2(3)----------->ARR10                             <---------ANAC58  --------->ZAT18 <---------YAB1    <--------P   <---------ARR14(2)                --------->ANAC55(2)   <---------YAB1 ==========HOX2a_HOX2a<---------AGP1                              <---------ANAC55(2)   --------->ICU4   gttatccttatacaaattttggtagatctgtgtagttctggattttgaattttgaattgaaattggtttcgtgattttgtgggaagtgcgatgattccgt  6920900                                                  <------MYB46(1)                                                  <------MYB83                                                 --------->MYB59                    <---------ZAT18                                                 --------->MYB111(1)                --------->ZAT18                                                 <---------TOE1(2)                --------->ZAT18 ----TEIL--------->MYB52(1)                      <---------TOE2(2)             <---------ANAC58 -----MYB52(1)          <---------TOE2(3)       <---------MYB55(1)             <---------ANAC46 ---ANAC58           --------->CCA1(2)          <--------P                     <---------ANAC58 ---ANAC58     <---------WOX13(1)         <---------ARR14(2)                   --------->ALFIN1     - ---ANAC46   --------->ATHB12            <------ZmHOX2a(1)             --------->ALFIN1             <   tcatttttcagtaactgattgggatataggttagaattggagaggaattggtaggtttttgagaatggctaatgtggagatgtgtgtgcaatctcgtagt  6921000  Previous    Next  AGI:  At4g11380.1    Description:  beta-adaptin, putative. similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G23460.1); similar to hypothetical protein OsJ_010430 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26947.1); similar to Adapter-related protein complex 1 beta 1 subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96009.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65935.1); contains InterPro domain Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain; (InterPro:IPR008152); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Clathrin/coatomer adaptor, Range:  from: 6920496    to: 6925964    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version