Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->ICU4                                                          ----------->GT1                                                   <---------RVE1(1)                               ----------->RAV1(1)<---------GLK1(2)                            ------                           <---------TOE2(3)      <---------ARR11(3)              --------->ANAC46  -                     <---------YAB1               --------->ARR11(3)       <---------ARR11(3)--------                     <---------TOE2(3)<---------YAB1 <---------AHL20(2)    --------->ARR11(3)<-------   gttagattgttatctgttttcttatggttgaggcaacattatgttttgtttagattttttttgtaaaaattgtggaagatgttcacagcattttcaactg  6849200                                                                          <---------AHL20(1)                                                                          --------->AHL20(1)                                                                          --------->AHL20(2)                            <---------HSFB2a(2)                           <---------AHL20(2)                            --------->HSFB2a(2)                   <---------AHL20(2)       <---------ANAC46  <----------DOF2                          --------->AHL20(2)       <------MYB83     <---------DAG2                           --------->YAB1       <------MYB46(1)-------->P                             --------->AHL20(2)      --------->MYB59<-----------GT1                         <---------AHL20(2)  ------->TEIL      -- ->GAMYB            ------->GAMYB                     --------->TOE2(3)--------->YAB1            ---- --------->DOF2    --------->MYB46(3)                ----------->GT1--------->YAB1               <--- ->At4g35610       <---------MYB111(1)               --------->ANAC46--------->AHL20(1)         ----- --At4g35610       <---------MYB52(2)               <---------TOE2(3)--------->AHL20(2)    ----------   aagaaagttgggttttatacaactaaccttttagaaacatattctaaaaacataaacgtaaaatttataaaaataataaaatgaaacttgaaaaacaatt  6849300                                                                                                    <                                                                                                    <                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              <------NtERF2                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                                           --------->ATERF1(1)                                                                                           <------NtERF2                                                                                          <---------ATERF1(1)                                                                                          <----------              --------->ARR11(3)                                                         --------->ANAC46        --------->ANAC55(2)                                                              --------->TGA1a        <---------ANAC55(2)                                                              <---------O2        --------->ANAC46                                          <---------GLK1(2)      --------->O2        --------->bZIP60(1)                                       --------->ARR11(3)   --------->ANAC46       ---------->ID1                                           ----------->ARR10      --------->ANAC55(2) ------->TOE2(3)                                             <------ZmHOX2a(1)      <---------REM1(2) ----->ARR11(3)                <---------AHL20(2)          <---------TOE1(3) <-----------GT1<-------- ------ARR11(3)          --------->At4g35610               <---------TOE2(3)<---------CCA1(2)------>NtERF2 ---->YAB1    <---------AHL20(1)--------->YAB1         --------->CCA1(2) ==========================bZIP_DOF -->CBF<---------TOE2(3) ----------->GT1          --------->TOE2(3)      <----------DOF2 <---------TGA1a   atcttatttgacgtaatatatactataagctaaataataagagaagaggtaacctagatttgaggatagatactgcttttatcttcttcacgcgtcgccg  6849400      <---------ANAC58      <---------ANAC58    <---------YAB1 ---------ANAC55(2) ---------ANAC46 ---->NtERF2 -------ANAC46 ---NtERF2 -----ATERF1(1) ->NtERF2 --->DEAR3(1) ----DEAR3(1) --->At1g77200 ----->HVH21               ------------>CBF -->ATERF1(1)            --------->ANAC58 -->DEAR3(2)             --------->ANAC58       <---------ANAC46 -->RAP2.3(1)         <------NtERF2             <---------ANAC58 --RAP2.3(1)   <---------MYB52(1)         --------->ARR11(3)  --------->GLK1(2) --ATERF1(1)   --------->LBD16           --------->YAB1    ------------>CBF >DEAR3(1)   --------->HSFB2a(2)     <---------AHL20(2)   <-----------GT1 -HVH21      <---------HSFB2a(2)   ----------->TBP <---------ZAT14               ------------>CBF<--- -DEAR3(1)   <---------LBD16 --------->WOX13(1) <---------ANAC58         ------------>CBF<---------At4g35610   acgcgtatgcttgttcccgtaggcaccaaggcaatctatataaacatattgagtgaagtttcacaatctttcaccatcaattccacaattctgcttcttc  6849500                                                      <---------ATHB12                                                     <-----------ARR10         --------->HSFC1(2)                                             <---------ANAC46                  <---------HSFC1(2)                                             <---------ANAC58                 --------->ANAC58   ----               <-----------HVH21             <---------ANAC58                 --------->ANAC58   <--- <---------ANAC46  <------NtERF2             <---------AtLEC2             --------->ANAC58   <------- <---------ANAC58<---------ANAC46        <---------ANAC58                 --------->ANAC58   <------- <---------ANAC58--------->ETT(1)        <---------ANAC58         --------->YAB1     <<<<<<<<<TBF1 -------DOF2  <-----------RAV1(1)--------->TOE2(3)   --------->GLK1(2)  ---------->DOF2 <<<<<<<<<TBF1   tttgtgtgttatctctctgtcggagaaaaaaaaaaccctagtttcttgcttggcgaatcaaggcaaaatcacgatgaagcaagcttcttcttcttcgtca  6849600                                                                                    <-----------HVH21                                                       <----------DOF2              <-----------TGA1                                                --------->At4g35610                <---------ANAC58                                             --------->At4g35610                   <---------ANAC58 ----->ANAC55(2)                          ---------->DOF2                    <---------ANAC46       < ------ANAC55(2)                 --------->GLK1(2)  --------->ARR11(3)       <---------ANAC58  ------ ----TGA1         --------->MYB52(1)    <---------TOE2(3)   <---------GLK1(2)<---------ANAC58  <----- ----HVH21      --------->MYB46(3)  <----------DOF2 <---------ARR11(3)      <---------TOE2(3) <------   tgtaatccaacaagtttaacaaacagacttaaaacaatctttaagaaagcagaagagctttcgattctctgtgctattgacgtttgcgtcatctattacg  6849700           =========================HOX2a_HOX2a           ------>ZmHOX2a(2)          --------->At4g35610          <---------At4g35610      <XXXXXXXXXXXXXXXXXXXXMIR398A      <XXXXXXXXXXXXXXXXXXXXMIR398B/C                                <---------------AtSPL8      --------->At5g28300                                        ---------->DOF2    <---------DEAR3(1)                                     <---------TOE2(3)  --------->MYB52(1)                                       <---------TOE1(3) ----------->HVH21                       --------->At5g28300----------->GT1 -----------RAV1(2)                     ----------->GT1<----------DOF2          --------->ANAC58 --->ANAC55(2)               <------ZmHOX2a(1)        <---------ANAC46          --------->ANAC46 ----ANAC55(2)             <---------TOE1(3)          <---------ANAC58          --------->ANAC58 ---LBD16<---------ARR11(3)<---------TOE2(3)          <---------ANAC58 <------ZmHOX2a(1)          ---   gaccagacggtgatctgagaacatggcctaaggatagagagacagtgaaaaatatggctttgaggtataaagaggacagaaaacgcaagaagtgcctcaa  6849800                                                                              <---------WOX13(1)                                                                         --------->TOE2(3)                                                                         <---------------AGL15                                                                         --------------->AGL15                                                                        <-----------------AGL1                                                                        <-----------------AG                          --------->ALFIN1                              ----------------->AGL2   ----                       --------->DAG2                                   =============================                ---------->DOF2<------ZmHOX2a(1)                        <-----------------AGL3   <---             <---------HSFB2a(2)           --------->YAB1      <---------ANAC46                  <---           ------>ZmHOX2a(1)  <----------ID1                   <---------ANAC55(2)              <---- ------>YAB1 --------->HSFB2a(2)  ---------->DOF2        xxxxxxxxxxxxxxxx>smallRNA(i)         -------   tcttcatgagttcctcgagaaagagaaggtgaaggacaaagacaagtataaggggaagacgaattatgtgaagaaccctaattggtatccaaactttgat  6849900       --------->ANAC46 ----->YAB1                                                     ---------->DOF2 ===========================================================================MADS_MADS ------ICU4                                                 --------------->AGL15 -----HAHB4                                                ----------------->AGL3 -----YAB1  --------->MYB46(3)                             <-----------------AGL1 -->YAB1------>ZmHOX2a(1)           ------>ZmHOX2a(1)<-----------GT1    <---------ANAC46      -------   cattactctcctcaacaactctctcaattgattcagtccttagaacgaacactttctactctccaaaaaaggcttcgtattgttgagtcgcagaaaaaac  6850000                                    --------->ARR14(2)                 <---------ARR11(3)                                    <-----------ARR10             --------->STY1(2)                                    <---------ARR11(1)        ------>ZmHOX2a(2)                                    ------->TEIL  --------->ANAC46<---------STY1(2)                                    <---------ARR14(2)      --------->ARR14(2)                    <--                                   <---------ARR14(1)       <---------ARR14(2)     --------------->AtSPL8                           --------->ZAT6       --------->ANAC46------>ZmHOX2a(1)  --------------->AtSPL3                <---------At4g35610<---------CCA1(2) <---------ALFIN1  --------->ARR11(3)         <-- -->MYB52(1) <-------TEIL<-----------GT1     --------->ANAC46<------ZmHOX2a(2)     <---------------AtSPL8   agaacacaaacttggtgcatcagagtttaacaccatcgtatctgaaccagacacaacacttggatcctagcaagttctcgctgtatatgtacaaccatgg  6850100  Previous    Next  AGI:  At4g11240.1    Description:  TOPP7 (Type one serine/threonine protein phosphatase 7); protein serine/threonine phosphatase. Identical to Serine/threonine-protein phosphatase PP1 isozyme 6 (TOPP6) [Arabidopsis Thaliana] (GB:P48486;GB:Q8RX64;GB:Q9SUT7); similar to TOPP3 (Type one serine/threonine protein phosphatase 3), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G64040.1); similar to Serine/threonine-protein phosphatase PP1 (GB:P48488); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186) Range:  from: 6847108    to: 6849296    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g11250.1    Description:  AGL52; transcription factor. similar to AGL78, transcription factor [Arabidopsis thaliana] (TAIR:AT5G65330.1); similar to hypothetical protein DDB_0214889 [Dictyostelium discoideum AX4] (GB:XP_642203.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 6849574    to: 6850563    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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