Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->YAB1                                                          ----------->GT1                                                   --------------->AGL15                                   --------->ICU4 <-----------------AGL1                      -------                         --------->GLK1(2)        <-----------------AG              --------->ANAC58     --------->ANAC46   <---------GLK1(2)         --------->ANAC58                  --------->ANAC58 ----------DOF2   <---------YAB1   <---------YAB1 --------->ANAC58                <------ZmHOX2a(1) -------------->TaNAC69(2)       --------->YAB1   --------->ANAC46    --------->ATHB12   ----------->HVH21   ggcttcaacgccttcttgagattatagaatctttctcatgattttgtttctcacacaatatggcaataagagtgattgtgcctaggaagctatgaccaga  6780100                                     <---------ICU4                                    <------ZmHOX2a(2)                                    <---------YAB1 --------->TOE2(3)                                   --------->ARR11(3)                                   <---------ARR11(3)                            ------>ZmHOX2a(1)      --------->TOE1(3)           --------->ANAC58                            ===============HOX2a_HOX2a                         --------->ANAC58                      ------>ZmHOX2a(1)<---------YAB1                     <---------TOE1(3)         - ---->GT1             =====================HOX2a_HOX2a                    <---------TOE2(3)         <   aaaaaaaaacatgtttgtgttctcctactcctactaagatcattatacaaaaaccttcacttatgtgtttgattttaaggtactcaagtatttgaataag  6780200                                ------->GAMYB                               --------->MYB46(3)     <---------YAB1                              ------>MYB46(1)         <---------AHL20(2)                              ------>MYB83           --------->AHL20(1)                             -                             --------->MYB52(1)      --------->AHL20(2)                            --                      --------->LBD16                <---------AHL20(2)        <---------DAG2    ----                 --------->ATERF1(1)                 <---------AHL20(1)        <----------DOF2 <-----                <---------ATERF1(1)                 --------->YAB1         <---------WRKY38(1)-------        --------->ARR11(3) --------->MYB46(3)----------->GT1               <---------WRKY12---------- -------->ARR14(2)  <---------LBD16       --------->MYB52(1)              --------->WRKY18(1) ------- ---------ARR14(2) ------>ZmHOX2a(1)   <------------CBF                  <-----------HVH21--------->ANAC46   cagatagtgagttcttggctcctccggttaccaacggtcgaaattgacggtttaatataattcatagacaaaaccggtcaactttatattatccacaatc  6780300                                                                          --------->ANAC58        <------ZmHOX2a(2)                                          --------->ANAC46       <---------ARR11(3)                                     --------->ANAC46   --------->YAB1                                            <---------ZAT14  <------ZmHOX2a(2)                                          --------->ZAT14 ------>GAMYB                                                <---------ZAT18 ------->MYB46(3)                                        --------------->AtSPL8 ----->MYB52(1)                                          --------------->AtSPL3    --------->ZAT6 ----ATHB12                                              --------->ZAT6   --------->ANAC58 -->ANAC58                          <---------YAB1      <---------At5g28300------------>CBF -->CBF--------->ARR11(3)    <-------GAMYB             <-----------GT1    --------->ANAC46 -->ANAC58               --------->MYB52(1)     <------------CBF--------->ANAC46--------->YAB1   aacgatcaagatcaacgagaactaatcttacggttgatatcatacatctgtattgagttacagtacaccacaaaacactcaataaacactaagcactctt  6780400                                                                             --------->ZAT14                                                                             <---------REM1(2)                                       --------->ANAC58                     ----------------------->TaNAC69(2)                             <----------DOF2       <---------YAB1  --------->ATHB12              <---        <---------YAB1--------->ANAC58 --------->ANAC58            <--------HAHB4          <---------CCA1(2)     <----------DOF2  --------->ANAC46 ----------->GT1           --------->GLK1(2)       --------->ANAC46    <---------DAG2    --------->ANAC58--------->DAG2         --------->HSFB2a(2)    <-----------HVH21    --------------------->WRI1       ---------->DOF2 <---------GLK1(2) <-----------GT1  <------NtERF2   cttctaccttttgattttcgaaaaacgcaaactttctgaaaaagcaaaaacttctgattctctcgagaatcatttactcttcacactgtccccgtctctc  6780500                                               --------->At5g28300                                           --------->MYB52(1)                                          <---------WRKY12                        --------->DEAR3(1)                                          <---------WRKY38(1)                     --------->At1g77200                                         =================================HOX2a_HOX2a             ---                                         <------ZmHOX2a(2)                       --------->RAP2.3(1)                                     --------->DEAR3(2)                          <------NtERF2<------                   <-----------HVH21------->TEIL                   ------>ZmHOX2a(1)<------NtERF2 <--                  <---------bZIP60(1)--------->MYB46(3)           --------->TOE2(3)------>NtERF2-----             <---------ICU4        <---------ARR14(2)        --------->HSFB2a(1) --------->DEAR3(2)             --------->YAB1        --------->MYB52(1)  --------->TOE2(3)         --------->ATERF1(1)            --------->ICU4       <---------MYB52(2)  <---------ARR11(3)        <---------DEAR3(1)<---      ----------->GT1          ------>NtERF2  ----------->GT1<---------HSFB2a(1)<---------ATERF1(1) -------DOF2<---------ATHB12  --------->DEAR3(1)     --------->ARR11(3)  --------->TOE2(3)   ------>ZmHOX2a(1)   tttctcttgggttaatcatggtgtcagagacgacgacgaaccgatcaacggttaaaatctcaaacgttcctcaaaccatagtcgccgacgaactcctccg  6780600                        --------->ARR14(1)                       <---------ARR14(2)                       --------->ARR14(2)                       --------->ARR11(3)                       <---------ARR11(3)            --------->ZAT2 ------>ARR14(2)     ----------->ARR10    <---------GLK1(1) ---LBD16 <---------ALFIN1             --------->ANAC58             --------->ANAC58 -------ARR14(2) <------NtERF2--------->ARR14(2)            <---------YAB1 ---->LBD16 <---------ZAT2    <---------ARR14(2)  --------->MYB46(3)--------->ANAC58 ------MYB52(1)<---------DEAR3(1)      --------->ANAC58  ----------->HVH21                      <----   gttcttagaactccacctcggcgaagatactgtattcgcactcgaaatcccaacaactcgtgacaattggaagccaagagacttcgctcgagtacaattc  6780700                                                    <----------DOF2                                               <---------ZAT2                                               <---------At4g35610                                          --------->ANAC58                                      <---------HSFB2a(2)                           <---------GLK1(2)  --------->ANAC58                                 ------                          <---------At4g35610 --------->ANAC58       --------->TOE2(3)         <-----                          <---------ZAT2  --------->ANAC58           --------->TOE1(3)      <--------                          --------->ZAT2---------->DOF2              --------->TOE1(2)    --------->YAB1 -------GT1  <---------CCA1(2)        --------->HSFB2a(2)            --------->TOE2(2)   <---------YAB1   actaccctcgaagtcaaatctcgagcccagcttctctcttctcaaagcaagctccttttcaaaacccataacctaagactctctgaagcttatgatgata  6780800                          --------->DAG2                        ---------->DOF2                      ------>ZmHOX2a(1)                    --------->ANAC58                         --------->LBD16                    --------->ANAC58                       ----------->RAV1(2)                    --------->ANAC46                    <---------GLK1(1)                  --------->TOE1(2)                     --------->GLK1(1)                --------->CCA1(2)                     <---------ANAC58                <------ZmHOX2a(2)                     <---------ANAC58               --------->ARR14(2)                     <------MYB46(1)                 <---------ZAT18               --------->AGP1                    ======================RAV            --------->ZAT18               <---------ARR14(2)                <-----------RAV1(1)               <---------ANAC58          ------>ZmHOX2a(1)                      <---------MYB46(3)                <---------ANAC58 --->bZIP60(1) --------->ARR11(3) --------->ANAC58    <------MYB83  <---------At4g35610   <---------HSFB2a(2) ----bZIP60(1) <---------ARR11(3) --------->ANAC58 <---------MYB52(1)        <---------TOE2(3) -YAB1    =============HOX2a_HOX2a--------->ANAC46<-------GAMYB     --------->At4g35610 <---------ANAC46   tcatccctcgtcctgtagatccaaggaaaaggctagacgacatcgttttgactgttgggtttcctgagtctgatgaaaaaaggttttgtgccctagaaaa  6780900                                                                                                  ---             --------->ALFIN1                                                                     <--           <---------bZIP60(2)                                                                    ---           <---------ANAC46                                             <---------YAB1            <--       <-----------HVH21                                              ----------->GT1            <---      <---------ANAC46                                               <---------WOX13(1)        <-----      <---------ANAC58                                             <---------MYB46(3)    <------MYB46(1)      <---------ANAC58                                            <---------YAB1         <------MYB83    <------MYB46(1)                                            --------->ALFIN1         --------->MYB59    <------MYB83                                            --------->DAG2         <---------TOE2(3)   <---------AtMYB61   <---------YAB1                      ---------->DOF2   <---------TOE2(3) <-----   atgggatggtgtgaggtgttggattttgactgagaagagaagagttgagttttgggtttgggaaagtggtgattgttataagattgaagttaggtttgag  6781000  Previous    Next  AGI:  At4g11120.1    Description:  translation elongation factor Ts (EF-Ts), putative. similar to EMB2726 (EMBRYO DEFECTIVE 2726), translation elongation factor [Arabidopsis thaliana] (TAIR:AT4G29060.1); similar to ethylene-responsive elongation factor EF-Ts precursor [Lycopersicon esculentum] (GB:AAD46403.1); contains InterPro domain Translation elongation factor EFTs/EF1B; (InterPro:IPR001816); contains InterPro domain UBA-like (InterPro:IPR009060); contains InterPro domain Translation elongation factor EFTs/EF1B, dimerisation; (InterPro:IPR014039); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449) Range:  from: 6777798    to: 6780162    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g11130.1    Description:  RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase. similar to RDR1 (RNA-DEPENDENT RNA POLYMERASE 1), RNA-directed RNA polymerase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G14790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64367.1); similar to putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana] (GB:AAU21243.1); similar to RNA-dependent RNA polymerase [Zea mays] (GB:ABD72708.1); contains InterPro domain RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855) Range:  from: 6780518    to: 6784436    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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