Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------ICU4                 --------->ATHB51                 <---------AHL20(2)                <---------YAB1                --------->ICU4              --------->YAB1             --------->AHL20(2)             <---------AHL20(2)             <---------YAB1            <---------AHL20(2)            --------->AHL20(1)            <---------AHL20(1)         <---------AHL20(2)                                                                      ----         --------->AHL20(2)                                                            <------MYB83         --------->YAB1                    <-----------GT1                             <------MYB46(1)   --------->YAB1--------->AHL20(2)   <---------AHL20(2)                              --------->MYB59 --------GT1--------->AHL20(2)        --------->AHL20(2)----------->GT1     ---------->DOF2      ---- >GT1------>ZmHOX2a(1)      --------->MYB46(3)   <---------ATHB12  --------->YAB1 --------->ATHB12   ttctatcctaataatataattatttagtaaaccactagatttaaataactaatcaacttggttaaactaaaataaacccaaagttgatttggtcagcatt  6758900                 <---------ALFIN1            <---------YAB1                         ---------->ID1           --------->ANAC46                 --------->TOE2(3)                ------->TEIL     --------->YAB1                    --------->ARR11(3)                   <---------CCA1(2)  <----- ----->WRKY12 --------->AtMYB61        <---------ARR11(3)               <----------DOF2------>ZmHOX2a(1) ------->HVH21<---------ALFIN1         <---------AHL20(1)      <----------DOF2      <-----------GT1   tgacctatagtaaacaccaccacttatacactctgaaacgatatattcttaatgaagaccaaagactttctcaactttgaatctttttcctatttgttta  6759000                                             --------->AHL20(2)                                             ----------->TBP                           --------->WOX13(1)                                           <----------DOF2                            <---------ICU4                                          --------->TOE2(3)                          <---------ATHB12              <<<<<<<<<<WRKY26   <----------DOF2                        <---------------AtSPL8              <<<<<<<<<<WRKY38--------->ARR11(3)              --------->ANAC58       <---------YAB1      <---------ZAT18         <---------ARR11(1)              --------->ANAC46     --------->YAB1    <---------At4g35610      <---------CCA1(2)        ---------->DOF2   --------------->AtSPL3    --------->At4g35610    --------->YAB1 --------->TOE1(3)   --------->ANAC58--------->KAN4(2) ----AHL20(2) <<<<<<<<<<WRKY43<---------ARR11(3)    <---------HSFB2a(2) --------------->AtSPL8   atagtttgctcacttggtcaaattttcaaacatatcttttaaaacctttaaattccaaaagaacacgcttcgttttagtacattctcatcattcaaatac  6759100                                                                ----------->GT1                                                               ----------->GT1                                                              --------->DAG2                   ------>ZmHOX2a(1)                      --------->YAB1                  --------->TOE2(3)                      ----------->TBP      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <----------DOF2      <---------TOE1(2)    <---------YAB1       <-----------HVH21        <---------CCA1(2)     --------->YAB1      --------->TOE2(3)   --------->DAG2  --------->ARR11(3)     ------------>CBF         <---------MYB59    ---------->DOF2  <---------ARR11(3)    --------->TOE2(3)   --------->TOE2(3)---------->DOF2 --------->YAB1 ---------   caaaaatctcacatctttttcctaaaccacaatcacatgttcttaatctaaaccttactataaaaaagttaaaaagctatcacatctcttcaccttcaat  6759200                                                  --------->LBD16                                                <---------LBD16                                             ---------->DOF2                                           --------->At5g28300                                        <---------At5g28300                                       <---------WRKY38(1)     <---------DAG2            ----------->GT1                                       <---------WRKY12        <----------DOF2         ---------->DOF2                                      ----------->HVH21      ------>NtERF2     XXXXXXXXXXXXXXXXXXXX>MIR161.2                        xxxxxxxxxxxxxxxx>smallRNA(s)      <---------At5g28300  --------->ANAC58                    --------->YAB1   <-----------HVH21   <-----------GT1       --------->ANAC58                   <-------TEIL     --------->LBD16    <----------DOF2   <-----------GT1--------->DAG2 --->CBF       --------->AHL20(2) <---------LBD16<---------LBD16<----------DOF2--------->ANAC46   gtcaaaagtttttccaaaaaattcataactatttcttccggtcaccgtaaaccggggttttaccgcctttcgaatttactcaagacactaaaagtaacat  6759300                                                                  --------->ZAT2                                                                  --------->At4g35610                                                                  <---------At4g35610                                                              --------->ANAC58                                                              --------->AtLEC2                                                              --------->ANAC58                                                              --------->ANAC46                    <--               <---------At4g35610                         --------->WRKY18(1)                   ----               --------->At4g35610                        ------>NtERF2                          <---     <---------YAB1                                      --------->RAP2.6(2)<-------TEIL         <---   --------->YAB1    <------ZmHOX2a(1)               --------->DAG2   <-----------RAV1(2)       <xxxx  --------->ICU4--------->ALFIN1                    ---------->DOF2 <----------DOF2          <-------   ggaaatgatgaattgggagcggaggagtttgctaaacgagctaattcatggactaaaagcggccaagcagcttcagggttcgtcttctccatcgttgtca  6759400                                                                                                    -                                                                                                   --                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                           --------->MYB46(3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          ------>ZmHOX2a(2)   <<<<<<<<<TBF1                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <------ZmHOX2a(2) -------GLK1(2)            --------->DAG2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------ARR14(2) ----->At4g35610          ---------->DOF2 --------->ANAC55(2)                            <---------TCP20 ------ZAT2              --------->CCA1(2)<---------ANAC55(2)                            --------->ARR14(2) ------At4g35610--------->ETT(2)  <---------ARR14(2)                      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->GLK1(2)                --------->DAG2   --------->MYB52(1) ----HVH21   ----------->HVH21   <---------GLK1(2)                ---------->DOF2  <---------WRKY38(1)   gcttcttcttcatatttgacgacggagataaaggagaatctcttacataacatagtttcttccttcaaaaaagctattttgatgctcaacggatccacca  6759500                                                               ------>ZmHOX2a(2)                                                              <---------GLK1(1)                                                              <------ZmHOX2a(2)                                                             --------->ARR14(3)                                                             <---------ARR11(3)                                                             --------->ARR14(2)                                                             --------->ARR11(3)                                                             <---------ARR14(2)           ---------->DOF2                                                             <-----------ARR10          --------->LBD16                                                            <---------GLK1(2)           <---------HSFB2a(2)                                                            ======================HOX2a_HOX2a                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          --------->LBD16               --------->HSFB2a(2)                                                         <-----------RAV1(2)          <xxxxxxxxxxxxxx                                                         <---------HSFB2a(2)        --------->ARR14(2)                                                         --------->HSFB2a(2)        <---------ARR14(2)                                                         <---------LBD16           <---------GLK1(1)         --------->TOE1(2)                          --------->HSFB2a(1)            --------->GLK1(1) ---------->RAV1(1)             ===================================HOX2a_HOX2a    xxxxxxxxxxxxxxxxxxx ------->ANAC46                 ------>ZmHOX2a(2)   <---------HSFB2a(1)           --------->ARR14(2) ----->ANAC58                 --------->ARR14(2)   --------->DAG2             <---------LBD16 ----->ANAC46                 <---------ARR14(2) ---------->DOF2           <------ZmHOX2a(2) ----->ANAC58             ----------->RAV1(2)  --------->LBD16--------->GLK1(1) --------->LBD16 ----ALFIN1              ------>NtERF2        <---------HSFB2a(2)         <-----------HVH21 ----->RAV1(1)      <---------ANAC58          --------->HSFB2a(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --->AtMYB61        <---------ANAC58          --------->LBD16<---------ARR14(3)<xxxxxxxxxxxxxxxxxxxxx -->ANAC46        --------->ARR11(3)         <---------LBD16<------ZmHOX2a(1)--------->MYB52(1)   cacaacacaatccaacgatagagcttgcgcctgatcccctagctcatcccggaaaggttccaggatctccagcatcgatcaccggaaatccgagaagcga  6759600                                                    --------->ICU4                                               ----------->GT1                                          ---------->DOF2                                        ----                <------ZmHOX2a(2)      <---------HSFB2a(2)                   ---------->DOF2     <--- xxsmallRNA(i) --------->ARR11(3)      <---------------AGL15           ----------->GT1          ----- xxxx>smallRNA(fl3)                    --------------->AGL15           <---------ZAT6          <----- xxsmallRNA(s2)<---------ARR11(3)      --------->HSFB2a(2)      --------->AHL20(2)     ---------->DOF2   agagtttttcaatgtaagatcgaaagaattcaacttaagttctaaaaagaggtaaaaatttgaacttaaattagcgttataaagaagagaaaagcttatt  6759700                   --------->YAB1                --------->YAB1                <---------ICU4             <---------ICU4             --------->YAB1            <---------YAB1            --------->ICU4          --------->YAB1         --------->ICU4       <---------ICU4       --------->YAB1    --------->YAB1 --------->AHL20(2)   <---------AHL20(2)   --------->AHL20(2)                                                                    <------ZmHOX2a(1)  --------->AHL20(2)                                                             --------->ARR14(2)  --------->AHL20(1)                            <---------RVE1(1)            --------->YAB1   <------  <---------AHL20(2)--------->AHL20(1)         <---------GLK1(2)           <---------TOE2(3)  <------ ----->AHL20(2)<---------YAB1                  <---------ARR11(3)        <---------AHL20(2)  -------- ------AHL20(2)--------->ICU4                  --------->ARR14(2)        --------->AHL20(2)  <------- ---->YAB1<---------ICU4                       <---------ARR14(2) ----------->HVH21   <---------AtLEC2 ----YAB1<---------YAB1             --------->AHL20(2)          --------->CCA1(2)<---------ARR14(2)--   aaaatttaataataataataataatattagaattcaaaaaaaatagccagattttttgaattagagatttgacaattaatgaaaatttgcaggaagatgt  6759800  Previous    Next  AGI:  At4g11070.1    Description:  WRKY41 (WRKY DNA-binding protein 41); transcription factor. Identical to Probable WRKY transcription factor 41 (WRKY41) [Arabidopsis Thaliana] (GB:Q8H0Y8;GB:O82511); similar to WRKY53 (WRKY DNA-binding protein 53), DNA binding / protein binding / transcription activator/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G23810.1); similar to WRKY53 transcription factor [Thlaspi caerulescens] (GB:ABN79278.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) Range:  from: 6759299    to: 6760790    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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