AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved TF binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<---------ALFIN1 --------->REM1(1) <---------ARR14(3) --------->ARR14(3) <-----------ARR10 --------->ANAC58 --------->ANAC46 --------->GLK1(2) --------->ANAC46 <---------ALFIN1 --------->ARR11(3) --------->ANAC58 <---------ICU4 --------->ARR14(2) --------->MYB46(3) --------->ICU4 --------->ZAT6 <---------ARR11(3) <------ZmHOX2a(1) <---------At4g35610 ---------->DOF2
cttcaaaatcttcttctacaccttcatcgataggaccagtagagaaccacgacttagagcctctctcagcacttattgctacacatcaaagtaacacaag	6756100
------>ZmHOX2a(2) --------->At4g35610 --------->ARR11(3) <---------ARR11(3) -------- ----------->ARR10 <-------- --------->MYB52(1) <------ZmHOX2a(2) --------------->AGL15 --------->GLK1(2) --------->TOE2(3) <---------AGP1 ---------->DOF2 ---------->DOF2 <-----------ARR10 --------->CCA1(2) <---------------AGL15 <---------ARR14(2) <---------At4g35610 <---------ARR11(3) <---------MYB59 --------->ARR11(3) --------->At4g35610 --------->ARR11(3) <---------ANAC55(2) <---------ARR11(3) --------->YAB1 <---------At4g35610 ----------------->AGL1 --------->ARR14(2) <---------ATHB12 --------->DAG2 --------->ANAC55(2) ----------------->AG <------ZmHOX2a(1) <---------YAB1 ---------->DOF2 <---------TOE2(3)<---------ICU4 <---------ARR14(2) --------->GLK1(2)
aagaaacaaatgatagtcttctgagaaaaaggcagaagatttaggtgataagaaagaagaattacctaaaggagatattgaagaggatctgagaaccttg	6756200
--------->ANAC46 --------->LBD16 ------>ZmHOX2a(1) <---------HSFB2a(2) --------->HSFB2a(2) --------->HSFB2a(2) <---------HSFB2a(2) -------->HAHB4 <------ <---------ANAC58 --------->ATHB12 <------- <---------ANAC46 <------ZmHOX2a(1) <---------ICU4 <-------GAMYB ->TOE1(2)<---------ANAC58 <---------TOE1(3) --------->GLK1(1) <---------TOE1(3) -HSFB2a(1) <-------TEIL <---------TOE2(3) --------->ICU4 <---------ATHB12 <---------TOE2(3)
gagactctaatggcgagtgagttcattctgggacgactctaaggatgtgatgtctgcaaaaatgagggaattgcaaatgattcctcgaaattagggttgt	6756300
<---------GLK1(1) --------->ZAT2 <---------AHL20(2) --------->CCA1(2) --------->AHL20(2)----------->ARR10 <---------YAB1 <---------ZAT2 <---------ARR14(2) --------->YAB1 --------->At4g35610 --------->ARR14(2) -------->P ---MYB46(3) <---------ATHB12 <---------At4g35610 <------ZmHOX2a(1) <---------ANAC58 -P --------->WOX13(1) ------->TEIL ---------->DOF2 <---------ANAC58 -
ttacaacaaatttgaaccaattacgattaaatcacgacgaagctgagaaatgcgaaagcaggattccgatgtaagagggaaatggcttaccagtgagttt	6756400
<---------TOE1(3) <------ZmHOX2a(1) <-------GAMYB <-------- ----------->RAV1(1) <---------bZIP60(1) <---------RVE1(1) --------->ANAC58 --------->O2 <-------GAMYB <-------- --------->ANAC46 ----------->GT1 <---------TOE2(3) <---------ANAC46 <-- --------->ANAC58 ------------------------>ANAC81 <-----------GT1 <---------GLK1(2) <---------------AtSPL8 >>>>>>>>>TBF1 <---------O2 ----------->GT1 <---------ARR11(3) --------->DOF2 <---------ALFIN1 >>>>>>>>>TBF1 --------->bZIP60(1)--------->TOE2(3) --------->ARR11(3)
gtgaaagagggaacgcaacacagagaggaagaagaagaagagtaaaacgacgtcgttgaggtttgattcgttaaaccctgcgttgaagatttttagggtt	6756500
<------NtERF2 --------->RAP2.6(3) ------>NtERF2 <-------- <---------ATERF1(1) ------>MYB46(1) --------->DEAR3(1) ------>MYB83 --------->MYB52(1) <---------ATERF1(1) <---------MYB59 <----------ID1 --------->SPL7 --------->TOE1(3) <-----------GT1 -TOE2(3) <------ZmHOX2a(1) <---------TOE2(3)------>ZmHOX2a(2) -TOE1(3) *TSS --------->ALFIN1 --------->TOE2(3) --------->ARR11(3) -------ANAC46 ----------->HVH21 <---------TOE2(2)------>NtERF2 <---------ARR11(3) -
ttggggacaaaacgaaaacgatgtgaacgggaaacatttcggaggtagaggacgacgacggcaaccttaggttgtgctatgtgatcttaccaaattaccc	6756600
--------->ARR11(3) <---------AHL20(1) --------->AHL20(1) <---------ARR11(3) <---------ARR14(2) --------->GLK1(2) <--------- <---------TOE2(3) --------->ARR14(2) <---------AHL20(1) --------->YAB1 <---------AHL20(2) <-----------------AG --------->AHL20(2) <---------AHL20(2) <---------TOE2(3) <---------bZIP60(2) <---------AHL20(2) --------->AHL20(2) <---------DOF5.7(2) ----------->HVH21 <---------DAG2 <---------AHL20(2) <---------AHL20(2) --------->DOF5.7(2) <---------At4g35610 <-----------GT1 <---------AHL20(2) --------->AHL20(2) ---GT1 --------->AHL20(2) <---------ANAC46 <----------DOF2 --------->YAB1 <---------AHL20(2) -------->TOE2(3) --------->At4g35610 <------ZmHOX2a(1)<---------AHL20(2) <---------YAB1 <----------
ttcgttaacgaattaatgaaatgagatgacatggcccgtataggatttaacttttcaattttttttaatgagaatattttcatttattaattttaactca	6756700
<---------AHL20(2) <---------AHL20(2) <---------AHL20(1) --------->AHL20(2) --------->AHL20(1) --------->ARR11(3) <---------YAB1 < --------->AHL20(2) <---------AHL20(1) <---------AHL20(2) --------->ICU4 --------->AHL20(1) <---------REM1(1) --------------->AGL15 <-----------GT1 <---------ARR11(3) <---------AHL20(2) <---------ANAC46 <---------ARR11(3) --------->ARR11(3) --GT1 <---------AHL20(2) <---------At5g28300 <---------AHL20(2) <---------AHL20(2) -GT1 --------->AHL20(2) <-----------GT1 --------->AHL20(2) --------->AHL20(2) <-
tttgatattaatttgtatgatgtaagattaacttaagagattaccgtatatataaaaaatatatttttaacaatgtttagttttaaatatttttgtggat	6756800
<------NtERF2 <---------DEAR3(1) xxxxxxxxxxxxxxxx>smallRNA(i) --------->RAP2.6(3) <-----------HVH21 <xxxxxxxxxxxxxxxxxxxxxx smallRNA(se3) <-----------RAV1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC55(2) <-------TEIL <---------AHL20(2) <-----------HVH21 --------->AHL20(2) --------->MYB59 <---------AHL20(2) <-----------RAV1(2) --------->AHL20(2) xxxxxxxxxxxxxxxxxx>smallRNA(si3) <----- --------->AHL20(2) <xxxxxxxxxxxxxxxx smallRNA(i)<---------DEAR3(2) <--------- <---------AHL20(2) <xxxxxxxxxxxxxxxx smallRNA(i)<---------RAP2.6(2) ---------- ---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<----------DOF2 <--------- --------YAB1 --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <------ZmHOX2a(1)
ttttatttttttaattaagtattagccctaagcgttttggtattcgagtcaggttcaggtcggctattttgggtttgagtttagaagtttaggacccgtt	6756900
<---------ANAC58 <---------ANAC46 <---------AHL20(2) --------->AHL20(2) <---------AHL20(1) --------->AHL20(2) <---------ARR11(1) <---------ARR14(2) --------->GLK1(2) <---------ARR11(3) <---------CCA1(2) --------->ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) < <---------TOE1(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) < <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) - --------->AHL20(2) <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxx smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----MYB52(1) <---------TOE1(3) --------->AHL20(1) <---------ANAC58 <---------ANAC55(2) --------AGL1 <--------P <---------AHL20(1) <---------ANAC58 <---------ANAC58 ------->AGL1 xxxxxxxxxxxxxxxx>smallRNA(i)--------->AHL20(2) <---------ANAC46 <---------AHL20(2) --------AG <---------GLK1(1) <---------AHL20(2) <---------ANAC46 --------->AHL20(1)----
tgggtaatttaagatttcaggtcgggttagggttcgagtttatttatatattaaaatatcaaattttgtgtgcaaatctattaaattacttgaaaatttt	6757000

AGI:	At4g11060.1
Description:	MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN); single-stranded DNA binding. Identical to Single-stranded DNA-binding protein, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q84J78;GB:O82512;GB:Q9T011); similar to single-strand-binding family protein [Arabidopsis thaliana] (TAIR:AT3G18580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17481.1); contains InterPro domain Primosome PriB/single-strand DNA-binding; (InterPro:IPR000424); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027)
Range:	from: 6754583	to: 6756528	Orientation: Reverse
Links:	TAIR MIPS

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