Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->YAB1                                 <---------ATHB51                            --------->ANAC58                            --------->ANAC58                            --------->ANAC46                          ---------->DOF2              --------->ICU4                         --------->YAB1                <---------YAB1                        <---------ATHB12         --------->GLK1(1)                       ------>MYB83             <---------ARR14(2)                             <-----                       ------>MYB46(1)          --------->ARR14(2)                             ------                      --------->WOX13(1)---------->DOF2<---------ATHB12                        ------                     --------------->AGL15      --------->ARR11(3)             <---------HSFB2a(2)                  <-----------GT1<---------ATHB12--------->CCA1(2)             --------->HSFB2a(2)               --------->MYB111(1)<--------ATHB1<---------ARR11(3)          <----------DOF2    <----- >GT1<---------YAB1  <---------------AGL15  ---------->DOF2              --------->GLK1(2) <---------RVE1(1)   acccagtaccattgtagtagttaccaatcaaagcaataataccaaagaaagatacccatgattttggaatcaaacaatcttttagaaaaactgatatttt  6718100                                                                             --------->ANAC58                                                                             --------->ANAC58                                 --------->AHL20(2)                      <-----------GT1                              --------->AHL20(2)                       <---------WOX13(1)                             --------->AHL20(2)                      <--------ATHB1                             <---------AHL20(2)                      <---------ICU4      --------->GLK1(2)   --------->AHL20(2)                         --------->ATHB12             <-- <---------ANAC55(2)     <---------AHL20(2)                          --------->YAB1             <---- ----AHL20(2)            --------->AHL20(2)                         --------->ICU4              ----- --->AHL20(1)         <---------AHL20(2)                            <---------YAB1      <---------ICU4 --->AHL20(2)        --------->AHL20(2)                             <---------ATHB12 --------->YAB1 ----AHL20(1)        <---------AHL20(2)      ---------->DOF2    <---------ATHB12    <---------ATHB12   attacgagaatttatgcccaaaattaaataaataaataaacacaaaaaaaagagcctcgtagtcaaatcaatgattaacaagtcaaatcataatcccaaa  6718200                                           <-------MYC3                                           ------->MYC3                                          --------->O2                                          --------->ANAC46                                          --------->ANAC58                                          --------->ANAC55(1)                                          --------->ANAC58                                          <---------TGA1a                                          ============================bZIP_DOF----------->RAV1(2)                                          <---------O2                       ------->TEIL                                          --------->TGA1a                    --------->GLK1(2)                                         <---------TOE1(2)                  ------>MYB83                                      --------->YAB1                        ------>MYB46(1)        --------->YAB1               <---------ATHB12                     --------->DEAR3(1)       <---------ATHB12            --------->WOX13(1)                     <---------MYB46(2)       --------->ICU4           ------>ZmHOX2a(1)                         <---------MYB52(2) -----TEIL                  <---------ARR14(2)                           --------->ANAC46      <----- -----ARR14(2)              --------->ARR14(2)             ---------->DOF2--------->MYB46(3)   <----- ---->ARR14(2)             --------->GLK1(1)     ------>ZmHOX2a(1)     <-----------GT1   <------ZmHOX2a(1)   ttcgttgaaatcatcaactacacaaacacaaatccttcaatcacacgtttcctagccctaagaaagcgaaatttcaccgaacctggtggaaggagaggcg  6718300                                                    --------->ICU4                                                 <------ZmHOX2a(1)                                              <------NtERF2                                            <---------DEAR3(1)                                            <---------ANAC46          --------->At4g35610              <---------LBD16                                --------->HSFB2a(2)          <---------ZAT2                   <------NtERF2                                  <---------HSFB2a(2)          <---------At4g35610              --------->ATERF1(1)                       <---------MYB55(2)     --------->REM1(2)                    <---------RAP2.3(1)                        --------->MYB46(3)   --------->LBD16                        <---------ORA47(2)                       <---------ARR14(2)  <---------ANAC46                       <---------RAP2.3(3)                       --------->ARR14(2) <---------LBD16                       --------->CCA1(2)                    <---------LBD16 ----ANAC58  --------->LBD16 ------->MYC3<---------RAP2.3(2)        --------->MYB46(3)------->GAMYB ----ANAC58  ------>NtERF2   <-------MYC3<---------DEAR3(1) <---------GLK1(2)      <-----------GT1  <   ttctccgtgttcagccgcgagtttcttcacacgttgaagagagacggcggaggaattatcgagattatcaacaactacgacggagtaaccaccgagaaga  6718400                                                                   --------->ANAC46                                                                   --------->ANAC58  ------>ZmHOX2a(2)                                                                   <---------ANAC55(2)                                                              --------->ATHB12      <------ZmHOX2a(2)                                  --------->AtMYB61           --------->YAB1       --------->ARR14(2)                                  <---------ALFIN1            <---------ICU4       <---------ARR11(3)                                  --------->DEAR3(1)          <--------HAHB4       --------->GLK1(2)                                 <---------ABI4(2)           <---------ATHB12      --------->ARR11(3)                                 --------->MYB46(3)          --------->ICU4        <---------ARR14(2)          --------->ALFIN1     <---------ALFIN1  --------->HSFB2a(1)              ===================        <---------ANAC46    --------->ANAC46     <---------HSFB2a(1)  --------->MYB52(1)    --------->MYB46(3)   <---------ARR14(2)    <<<<<<<ZML2   <---------YAB1       <------ZmHOX2a(1)-- ---------->DOF2         ------->TEIL       --------->HSFB2a(2)    --------->ANAC58<-----------ARR10 ---------REM1(1)--------->MYB52(1)         <---------HSFB2a(2)    --------->ANAC55(2)<----------DOF2   agttgaagcaccgtgtgactaccgatgtatccagcaccaccgcttactagaacgtttctagccatcattacgaaacagaagaaaggatctttgttttttg  6718500                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                <----                                           ------>ZmHOX2a(2)                                <-------GAMYB           <------ZmHOX2a(2)              --------->GLK1(1)                                <---------MYB46(3)          --------->ARR11(3)             <---------ARR11(3)                            ----------->HVH21          <---------ARR11(3)             --------->ARR11(3)                       --------->GLK1(2)      ---------->DOF2              <----------DOF2                               <---------GLK1(2)  <----------ID1                  <---------ANAC58          <----------DOF2<---------AHL20(1)   <---- ----------->GT1                  <---------ANAC58         <---------ANAC46<---------AHL20(2)   <---- <---------TOE2(3)             <---------WOX13(1)          <---------ANAC58--------->AHL20(1)   <---- =================HOX2a_HOX2a<<<<<<<<<RAP2.2       *TSS    <---------ANAC58--------->ARR11(3)  <----- -------->DOF2              <---------TOE2(3) *TSS ---------->DOF2        <-----------TBP <---------YAB1   gtaaaggaaaaagatcaagagaaatgtttttagattgctttgtgatctccagcgaaagagtgcttggaggtttttaatatatagaatcggtgatggttac  6718600                                                                                            ---------                                                                                           <-------PIF5                                                                                           <-------MYC3                                                                                           <-------MYC4                                                            --------->WOX13(1)             ------->MYC4                                                            --------------->AGL15          ------->PIF5                                                            <---------------AGL15          ------->MYC2       <---------TOE2(3)                             <---------ANAC46                     <---------O2       <---------YAB1                                --------->ANAC55(2)                  --------->bZIP60(2)   --------->AHL20(2)                                <---------ANAC55(2)                  --------->TGA1a   --------->YAB1                               <---------ICU4                            <---------ANAC46 ---->ANAC55(2)                                 <--------HAHB4   <---------TOE2(3)        <---------TGA1a -----ANAC46                                   <---------YAB1   --------->MYB52(1)        --------->O2 ------>GT1                               ------->TEIL    <-----------------AG <---------YAB1 -----ANAC55(2)                        --------->ANAC58   <-----------------AGL1          =========== -----ANAC58                           --------->ANAC58   ----------------->AGL3--------->YAB1 -----ANAC58  --------->TOE2(3)  <---------AHL20(2)  <---------ANAC58        --------->YAB1------->MYC3 -----O2----------->GT1          --------->AHL20(2)  <---------ANAC58        <---------ICU4<-------MYC2 -----ANAC55(1)                 <---------AHL20(2)   <---------ANAC55(1)    --------->ICU4<---------PIF3(3) ------------------TaNAC69(2)   --------->AHL20(2) <-----------GT1      ----------->GT1   --------->PIF3(3)   gtgaataatatggttacattaaacttaggcttaatttaaaaacgcatgtattattacgttttcaattaagggaatggaataatgaaaatgccacgtggtg  6718700                    <----------TaMYB80                   <---------KAN4(2)                   ---------->TaMYB80                <---------ANAC46             ----------->TGA1             ----------->HVH21           <---------MYB46(3)                                   --------->ZAT2   <---------TOE2(3)         <-------GAMYB                                          --------->At4g35610       --------->ALFIN1                                         <---------ZAT2  <---------At5g28300       <---------AtMYB61        <---------At5g28300             <---------At4g35610 <---------MYB52(1)     <---------ANAC46 --------->CCA1(2)                        ------->TEIL    <-----------GT1     <---------ANAC58<---------ARR14(2)                     <---------REM1(1) --------->ICU4     ----     <---------ANAC58--------->ARR14(2)                <---------ANAC58     <---------ICU4      ----- >ALFIN1<---------MYB46(3)  <---------ZAT6             <---------ANAC58  --------->YAB1       <------ ================MYC_MYB--------->ANAC46           <----------DOF2       ----------->GT1      -------   gaatatggtgtggttgtgacgaatatacgagagttacagttatcgaaactactcttttcttgatgaagctggaaatggtaattacggtttgtttattaac  6718800                                                                 <-----------GT1                                                          <----------DOF2                                                         ------>ZmHOX2a(2)                                                       <---------ARR11(3)                     <------                                                       --------->ARR11(3)                     ------- --->GAMYB                                             <---------ARR14(2)         --------->ICU4 ---->ANAC46                                           <---------AGP1       --------->DAG2    ------- -----GT1                                              --------->ARR14(2)  ---------->DOF2   <------- -->MYB52(1)                                          <---------CCA1(2)--------->AHL20(2)   <--------   ggaatcgaaatgaagcaaaactgtggaattgttttttttatgtagaacaaaatcgtggatctttttttgacattttaaaaagtaatgtttttttttacgt  6718900                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          <---------MYB52(1)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         <-------GAMYB                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                <---------At4g35610                                                --------->At4g35610                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                             --------->RAP2.6(3)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                            --------->MYB52(1)                                           ------>ZmHOX2a(1)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                          xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------YAB1                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->AHL20(2)                                      xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    xxxxxxxxxxxxxxxx>smallRNA(i)      --------->AHL20(2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxx                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->GT1               --------->TOE2(3)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---ANAC55(2)                 ---------->ID1<---------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->ANAC46                   <-----------GT1--------->ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -->ANAC55(2)           <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46   ---- --TOE2(3) <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->YAB1  --------->AHL20(1) ---GT1  <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------->GT1<xxxxxxxxxxxxxxxxxxxx   tacaatgttattttttctctacttatttttttttccttatctatcctatcggctgattcggttagactcgataaaaatacaccgaaatattatagaatgg  6719000  Previous    Next  AGI:  At4g10955.1    Description:  lipase class 3 family protein. similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G05260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69530.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) Range:  from: 6713553    to: 6718551    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g10960.1    Description:  UGE5 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 5); UDP-glucose 4-epimerase/ protein dimerization. Identical to Probable UDP-glucose 4-epimerase At4g10960 [Arabidopsis Thaliana] (GB:Q9SN58;GB:O81619); similar to UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT4G23920.1); similar to unknown [Populus trichocarpa] (GB:ABK95303.1); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro d Range:  from: 6713553    to: 6718546    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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