Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->YAB1                  <---------ATHB12                                                   --------->ANAC58             --------->ANAC58                                                   --------->AtLEC2             --------->ANAC58                                            --------------->AGL15              --------->DAG2                                            ------>ZmHOX2a(1)                 ---------->DOF2                                            <---------------AGL15        <---------HSFC1(1)                                          --------->YAB1                 <---------HSFB2a(2)                                       --------->WOX13(1)                --------->HSFB2a(2)       <---------GLK1(2)        --------->YAB1     --------->ANAC46  --------->ARR14(2) ------>ZAT6   --------->ANAC46<---------ATHB12    --------->ANAC58  <---------ARR14(2)           ---   acactattagcttctctacgagaccacatacaaatcaaaatcaatcctatttcaagcaaaatcagtaatcgaattcgagaaaaagcaatgaaatcaaacc  6698800                      <---------ICU4                      --------->YAB1                  <------NtERF2                 <-----------TGA1                 <---------RAP2.6(3)                 <-----------HVH21                 ------>NtERF2                --------->DEAR3(1)                --------->ANAC46                --------->RAP2.3(3)             ------>ZmHOX2a(2)                         <---------CCA1(2)            <------ZmHOX2a(2)                         ------>ZmHOX2a(1)           <---------ARR11(3)                        --------->TOE1(3)           --------->ARR11(3)   <----------DOF2      --------->TOE2(3)                           ----     --------->YAB1  <---------YAB1           --------->TOE2(3)            ------>ZmHOX2a(1)     <---    <---------ATHB12 --------->ICU4      <----------DOF2             <<<<<<<<<TBF1               <--- ------>AtLEC2 --------->RAP2.3(1)      --------->TOE2(3) <-----------GT1 --------->TOE2(3)   -------   ctgcaaatgataagatcgccgtcatcatcaaactctttgtttcctttaccacaatccttatctccatcttcttcttccttattcacttgtgagttttcat  6698900                                     <---------HSFB2a(1)                                     --------->HSFB2a(1)                                     --------->HSFC1(2)                          <---------ANAC46                                     <---------HSFC1(2)                     --------->ATHB12 ----->ARR14(2)                  --------->ANAC46                         <------ZmHOX2a(2) ------GLK1(2)                   --------->O2                --------->GLK1(1)   <---------ANAC58 ------ARR14(2)                  ----------->HVH21  <----------DOF2 --------->LBD16        --------->ANAC46 -->YAB1              <------ZmHOX2a(1)  <---------ANAC46    <---------GLK1(1)   <---------ANAC58   attctctcgctctctcttcgtcgaggaatttctccacgacgcttcgtacaaatgctttgtgagatttctccgagagatcgattgcgagtttctccgaagc  6699000                                                                                   ---------->ID1                                                                               ------>ZmHOX2a(1)                                                                        ==============HOX2a_HOX2a                                                                      <---------ARR11(3)                                 <---------ARR14(2)                   --------->ARR14(2)                                 --------->ARR14(2)      --------->YAB1 ------>ZmHOX2a(2)                                <---------CCA1(2)--------->ARR11(3)   <---------ARR14(2)                                <---------GLK1(1)<---------ARR14(2)   --------->ARR11(3)         --------->TOE2(3)    --------->YAB1     --------->GLK1(2)<-----------GT1  <---------CCA1(2)         --------->TOE1(3) <----------DOF2       <---------ARR11(3)--------->HSFB2a(2)       --------       ------->TEIL <---------MYB52(1)           --------->ARR14(2)<---------HSFB2a(2) <----------DOF2   gagtttacgaaccttgaactctgttatctctttcatatccgattcactgagtatctctatcacagttttctcgatcttctccttcgtctctttctccatt  6699100                                                                                                  xxx                                                                                                 xxxx                                                                                               *TSS                                                                                             <xxxxxxx                                                                                           --------->ALFIN1                                                                                         <---------ANAC58                                                                                    xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 --------->YAB1xxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                       <-----------GT1                                         xxxxxxxxxxxxxxxxxxxxxx                  --------->ARR14(2)                                          <xxxxxxxxxxxxxxxxxxxxxx                --------->LBD16                                               xxxxxxxxxxxxxxxxxxxxxxx             --------->LBD16 <---------ARR14(2)                               <xxxxxxxxxxxxxxxxsmallRNA(s)             ------>NtERF2  ------>MYB83                                      xxxxxxxxxxxxxxxxxxxxxxx            --------->ANAC46------>MYB46(1)                                   xxxxxxxxxxxxxxxxxxxxxxx            --------->DEAR3(1)    <---------GLK1(2)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------LBD16<---------MYB59                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------TOE1(3)<---------ARR14(2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------TOE2(3)<---------GLK1(2)                                     <---------ICU4   <---------ANAC58 ------->AGL15<---------LBD16--------->ARR14(2)  <-----------GT1       --------->ICU4<xxxxxxxxxxxxxxx   tttagggtttttctccgccggattttgaccaaatcggattatcggtgttataaacccgataagtatagatgaaattatcgcaatcgtataagcgtggtgg  6699200                                                                                                    x                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                   xx                                                                                                  xxx                                                                                                  xxx   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                   xxx xxxxxxxxxxxxx>smallRNA(s)                                                                        xxx xxxxxxxxxxxx>smallRNA(i)                                                                        <xxx xxxxxxxxxxxxxxxxsmallRNA(l2)                                                                    ---- xxxxx>smallRNA(fl3)                                                                             xxxx xxxxx>smallRNA(i2)                                                                              xxxx xxxxx>smallRNA(s2)                                                                             <xxxx xxxxx>smallRNA(si3)                                                                            xxxxx xxxx>smallRNA(l2)                                                                              <xxxx xxxx>smallRNA(si3)                                                                            xxxxxx xxxx>smallRNA(se3)                                                                            <xxxxx xxxx>smallRNA(i2)                                                                            xxxxxxx xxxx>smallRNA(l2)                                                                            xxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                              <xxxxxx xx>smallRNA(s2)                                                                              xxxxxxx xxx>smallRNA(se3)                                                                            <xxxxxx xxxsmallRNA(fl3)                                                                            xxxxxxxx x>smallRNA(s2)                                                                              xxxxxxxx xxxsmallRNA(fl3)                                                   --------->AHL20(2)  <---------ICU4 xxxsmallRNA(le3)      <---------AHL20(2)                   <----------DOF2             --------->ATHB51 xxsmallRNA(i2)      <---------------AGL15          <---------AHL20(1)                  --------->YAB1 x>smallRNA(le3)     ----------->TBP          <<<<<<<<<GATA-1   <---------YAB1          -------->HAHB4 xsmallRNA(le3)    --------->YAB1 --------->ICU4   --------->AHL20(2)                  --------->ICU4 >smallRNA(l2)   <-----------TBP  <---------YAB1   --------->YAB1 <------------CBF     <---------YAB1 >smallRNA(i2) --------------->AGL15    <---------YAB1   <---------AHL20(2)           xxxxxxxxxxxxxxx >smallRNA(se3)<---------------AGL15<---------ANAC58--------->AHL20(1)           ------->TEILxxxxxxxx xxxxxxxxxsmallRNA(l2)--------->YAB1<---------ANAC58<---------AHL20(2)  --------->AHL20(2)  ---------   taatccatcgctcatttctatttataaaaatggataatgcttatgtttatctattatattttctttaaaattgaataaatatggatgtaattatcgcaat  6699300                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxx>smallRNA(i)       --------->ALFIN1     <---------ANAC58     <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i2)                                 <<<<<<<<<GATA-1  --------->AHL20(2) xxxxxxxxxxsmallRNA(s)                                     <---------AHL20(2) ------>ZmHOX2a(1) xxxxxxxxxxxxxxx>smallRNA(i2)                          <---------AHL20(2)    --------->TOE1(3) xxxxxxxxxxxxxxx>smallRNA(s2)                      <---------YAB1            --------->TOE2(3) xxxxxxxx>smallRNA(le3)               --------->AHL20(2) <---------YAB1 <-----------GT1 xxxxxxxxxxxxxxx>smallRNA(si3)   <<<<<<<<<GATA-1   --------->ICU4    <---------AHL20(2)           --- --->CBF <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <---------TOE2(3)<---------YAB1                xxxx   cgtataagcgtggtggtaatccatcgctcatttttatctataaaatatggataatgtttatttttatctattattttctccttaaaattcgataagtatg  6699400              --------->YAB1              ----------->GT1             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)             <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         --------->AHL20(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                      <---------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       <---------AHL20(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                <<<<<<<<<GATA-1     <---------ICU4     --------->ALFIN1                            --------->ICU4   --------->YAB1    --------->ICU4     <-------MYC3     <xxxxxxxxxxxxxxxxsmallRNA(i)<---------YAB1   --------->AHL20(2)    <---------YAB1     ------->MYC3   xxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------AHL20(2) <---------YAB1    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(2) <---------YAB1 ---->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxx>smallRNA(i)   ----------->GT1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   gatgtgattatcgcaatcgtataaacgtggtggtaattcatcgctcatttctatctataaaatatggataatgcttatttttatctattatattttctgt  6699500                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               --------->YAB1  xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                            <xxxxxxxxxxxxxxxxsmallRNA(s)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      --------->ATHB51       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <<<<                      <---------ICU4       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)              <-------                      -------->HAHB4     --------->ALFIN1                                <---------CCA1(2)                      --------->YAB1   <---------ANAC58                              <---------YAB1                     --------->ICU4    <---------ANAC58                             <---------TOE2(3)                     <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)--------->AHL20(2)<----------                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ICU4   aaaactggataagtatagatgtaattatcgcaatcgtataagcgtggtggtaatccatcgctcatttctatctataaaatatggataatgtttatcttta  6699600                                                ----------->GT1                                                --------->YAB1                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                               <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->TOE1(3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------YAB1  ----------->GT1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------AHL20(1)                  <---------ICU4     --------->ALFIN1   <---------AHL20(2)                 --------->ICU4     ------->MYC3     <xxxxxxxxxxxxxxxxsmallRNA(i) <---------YAB1 --------->ZAT6        <---------YAB1     <-------MYC3   xxxxxxxxxxxxxxxxx>smallRNA(le3) <<<<<GATA-1------>ZmHOX2a(1)      <---------YAB1    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---DOF2   --------->TOE2(3)    ------->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -GT1   <-----------GT1        xxxxxxxxxxxxxxxx>smallRNA(i)   ----------->GT1   tctattattttttccttaaaactagataaatatggatgtgattatcgcaatcgtataaacgtggtggtaattcatcgctcatttctatctattgaatatg  6699700  Previous    Next  AGI:  At4g10920.1    Description:  KELP; DNA binding / transcription coactivator. Identical to RNA polymerase II transcriptional coactivator KELP (KELP) [Arabidopsis Thaliana] (GB:O65155); similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT4G00980.1); similar to putative transcriptional coactivator [Brassica rapa] (GB:BAB41214.1); contains InterPro domain RNA polymerase II transcriptional coactivator KELP (InterPro:IPR017415); contains InterPro domain Transcriptional coactivator p15; (InterPro:IPR003173); contains InterPro domain DEK C terminal (InterPro:IPR014876); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR00 Range:  from: 6697670    to: 6699195    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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