Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------>MYB83                                                           --------->MYB55(1)                                                          <---------MYB111(1)                                                          <---------MYB46(2)                   ------                                                          <---------MYB52(2)                  -------                                                          <---------MYB59                --------->At4g35610                                               --------->RAP2.6(2)                      --------->ANAC58                                         ----------->RAV1(1)------>MYB46(1)        --------->ZAT6                                        --------->AtMYB61--------->ANAC55(2)      -------->P  <------                                     --------->ANAC46    <---------ANAC55(2)   <---------MYB52(2)                                 ---------->DOF2------>NtERF2-------->P   --------->LBD16<---------At4g35610   ------>ZmHOX2a(2)         <----------ID1    --------->DEAR3(1)        --------->HSFB2a(2)--------- <---------ARR11(3)          <---------YAB1   --------->DEAR3(1)         <---------HSFB2a(2)-------->P -ALFIN1 --------->TOE2(3)<---------ARR14(2) <---------At4g35610    ------>ZmHOX2a(2)   --------->ANAC58 >AtMYB61--------->TOE1(3)--------->ARR14(2) --------->At4g35610   <------ZmHOX2a(2)--------->TOE1(3)   cctgatctaaaccctaacataccaagagaatacgataaaacaccaccagcggcccaaatacctaacccgatcgctccagaaactaaccctaagctaccag  6642700                                                                                                    -                                                                                                   --                                                                                                  <--                                           ------->TEIL                                           ---                                        ------>ZmHOX2a(1)                                       <----                                        --------->HSFB2a(2)                                     =====                                        <---------HSFB2a(2)                                    ------                               --------->ANAC58                                                <-----                               --------->ANAC55(1)                                         <---------DOF5.7(2)                               --------->ANAC58                       --------->YAB1      <---------WRKY12                      --------->YAB1    --------->LBD16             --------->ANAC58      <---------WRKY38(1)                     --------->ICU4   ----------->RAV1(2)           --------->ANAC58      <---------WRKY45    --------->YAB1 --------->YAB1  --------->GLK1(1)           --------->YAB1            --------->DOF5.7(2) --->ANAC46     ----------->GT1--------->AtLEC2                <---------ICU4        --------->ARR14(2) -->HSFB2a(2)  --------->DAG2  --------->ANAC46           ------>ZmHOX2a(1)  --------->ANAC58 ------- ---HSFB2a(2) ---------->DOF2<---------ALFIN1          ------>ZmHOX2a(1)     --------->ANAC58-------- >MYB52(1) ----------->GT1 ------>ZmHOX2a(1)      <---------GLK1(1) <---------ANAC55(2) --------->TOE2(3)   aaacaatcgaaatcggtaaagtaataatcctccacgcaactcctggacctcgatttcctcctccatcatcacgcataacaagctctgtatcgtcaacgat  6642800                              <----------DOF2                             <---------ANAC46                            <---------LBD16                             <---------ANAC58                            <------NtERF2      --------->ALFIN1     ------>NtERF2                                <---------RAP2.3(1)    <---------ZAT2        --------->ALFIN1                              ------>NtERF2    <---------ANAC46      ----------->TGA1                              <---------ATERF1(1) -------->LBD16           <---------DEAR3(1)                           <---------DEAR3(1) ------->ANAC46     ----------->HVH21                               ----------->HVH21 -------LBD16      <-----------HVH21                          <---------ALFIN1 ------>TOE1(2)  ===============================HOX2a_HOX2a   --------->AtMYB61 --ZmHOX2a(2)    =====================================HOX2a_HOX2a--------->AtMYB61   <---------HSFC1(2) =======================HOX2a_HOX2a                     <-----------GT1<---------RAP2.3(3) --->ARR14(2)    <------ZmHOX2a(1)   <---------YAB1  <---------MYB46(3)<---------RAP2.3(2) ----ARR14(2) --------->YAB1 <---------ANAC58  ------>ZmHOX2a(2)--------->MYB46(3)   --------->HSFB2a(1) >GAMYB----------->GT1<---------At5g28300  <---------YAB1    --------->MYB46(3)      --------->HSFC1(2) ->MYB46(3)   <---------ICU4<------NtERF2------>ZmHOX2a(2)--------->MYB46(3)<------NtERF2   cccgcgaggtggataatcaggagtcacggtggcgttattgtgatcgtgatcgcgattgttaccaccaccatcgacggcggaagacgaagcgtcttgatca  6642900                                                           <---------ZAT14                                                           <---------ZAT18                                                     ------>ZmHOX2a(2)                                                    <---------GLK1(1)                                                    --------->GLK1(1)                                                   --------->ARR14(2)                                            <----------DOF2--------->ZAT14                                    <---------ATHB12<------ZmHOX2a(2)                                    --------->MYB46(3) --------------->AtSPL8                          --------->HSFB2a(2)      <---------ARR14(2)                          <---------HSFB2a(2)      <---------ARR11(3)                      <---------ANAC58                          >>>>>>>ZML2--------->YAB1--------->ARR11(3)        <---------HSFB2a(2)                   <---------ANAC58------>MYB83    <-----------ARR10         --------->HSFB2a(2)    <                   <---------ANAC58-------->P      <---------AGP1      <---------ARR11(3)  <---------ANAC46                <---------WOX13(1) ------>MYB46(1)<------ZmHOX2a(1)--------->YAB1          <---------ANAC58   gaagatgtgaatgaagagattgctagttctaggtcccaaccatgagcttgaaggatctcagtacacaaatcagcatcttcgagacctgtaatcgcttgga  6643000                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                                  <-----------ARR10                         --------------->AGL15                    --------->ARR11(3)            --------->ETT(2)                                      <---------ARR11(3)     ------>MYB83        <---------------AGL15              <----------DOF2     ------>MYB46(1)    <---------ATHB12                  *TSS   <---------CCA1(2)   --------->TOE2(3)    ----------------->AGL2           --------->ANAC58   <---------MYB59     -------->P      --------->TOE1(3) --------->ANAC58  =======================================MADS_MADS     <---------ALFIN1  ----------------->AG--------->WOX13(1)            <-----------GT1 ------>ZmHOX2a(2)        <------- -----------GT1       <-----------GT1  --------->TOE2(3) --------->ANAC46                  <---------CCA1(2)   agtaacctaatttgtcaacagtatcaaccattttcagaaaaccctaattcgattttcccacgcttttggatcttctcttctcttctctcactcttatctc  6643100                                                                                       <---------ARR11(3)        <---------HSFB2a(2)                                                      ----------->GT1        --------->HSFB2a(2)                              --------->YAB1          --------->TOE2(3)     --------->ARR14(2)                                 ----------->TGA1       <---------At5g28300     <---------ARR14(2)                             ------------>CBF          <-----------GT1     --------->GLK1(2)                             --------->YAB1    >>>>>>>>>WRKY18   --------->ARR11(3)    <---------GLK1(2)     ----------->GT1     ------------>CBF       <---------WRKY18(1)   ------>ZmHOX2a(1) --CCA1(2)             <----------DOF2    ------>ZmHOX2a(2)<---------YAB1 --------->AHL20(2)   tctagagaatctagaaaactgtgttctttagtaaaatggtttgatctattcaatgacaatgacgatggccttgacttaaattaccgtaatatccttcagt  6643200                                                                      <------------CBF                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                         --------->ARR14(2)                     --------->ARR14(3)                         <---------ARR14(2)                     <---------ARR11(3)                      <---------MYB59                           --------->ARR11(3)               --------->YAB1                                   <---------ARR14(3)              <---------YAB1                             --------->ALFIN1           --------->AHL20(2)                          <---------ANAC58    --------->O2      ------->GAMYB                    <---------ANAC46     <---------WOX13(1)    <---------bZIP60(1) ------>MYB83             ------>MYB46(1)<---------ARR14(2)    --------->bZIP60(1) ------>MYB46(1)          ------>MYB83   --------->ARR14(2)     ------------>CBF    <---------O2    -------->P              <-----------GT1   ----------->ARR10  ---------->DOF2  <<< --------->ANAC46  --------->WOX13(1)  ----------->GT1 <---------ANAC58    <------------CBF<---------ATHB12   tatacgacgtcgttttattatcaaccaaattcgattcggtttagttaaaccaaatcagcgtgtgaagatccccattggattgctaaagtttcaatctttc  6643300                                       >>>>>>>>>>>>>>>>>LFY                                       ------>ZmHOX2a(1)                               --------->YAB1                --------->ANAC58  --------->YAB1                                      --------->ICU4                --------->ANAC46 <---------YAB1                ----------->GT1   ----------->GT1     *TSS     ---------->DOF2  <-----------GT1             <---------TOE2(3)    --------->DAG2     <- --------->ZAT14--------->ANAC58<-----------GT1          ---------->DOF2       ---------->DOF2<------ <<<<<<TBF1--------->AtLEC2   <---------YAB1          --------->TOE2(3)  <---------LBD16    <--------   ttcttcactcttcattcaaagcaatgttgtttattatcatcctccattgttgtttaacttaaaggaagaaaattttggggaaaaagtaagtatttttctc  6643400                                                                                                  <--                                                                                                 ----                                                                                                -----                                                                        <---------TOE2(3)       -----                                <---------YAB1                    =================================== --------MYB52(1)      ----------->GT1     <---------TOE2(3)      <---------------AGL15     --------- -----GT1         <-----------GT1       <---------WOX13(1)        --------------->AGL15     --------- ---GT1    ----------->GT1    ----------->GT1                    <-----------------AGL2    ------->TEIL   tgttttgtttgttttgttaattactctgtaaaatgtgattagattgacgaaaacagagctatgaaatgctaattagggttcttgaaatcgatgaacgtaa  6643500           <---------------AGL15 ----ZmHOX2a(1) ------->GT1      <------MYB46(1) ---->ANAC58      <------MYB83            ---------->ID1 ---->ANAC58     --------->MYB59         <-------GAMYB                                       <------- ===========================MADS_MADS   <---------MYB46(3)                ---------->DOF2  --------->ATHB12 >ANAC58  <-----------------AG <---------YAB1                      <---------YAB1         <---------YAB1 >ANAC58  <-----------------AGL1        --------->MYB52(2)   <---------MYB46(3)        <----------DOF2   ggaaatttcagttacaaatttggtaattgtgttcttattggtttgttgtttatgtagttagagttgttgattatagaaaagttttaagtcttttgattgg  6643600  Previous    Next  AGI:  At4g10790.1    Description:  UBX domain-containing protein. similar to SAY1 [Arabidopsis thaliana] (TAIR:AT4G11740.1); similar to Fas-associated factor 1-like protein [Capsicum annuum] (GB:AAW66458.1); contains InterPro domain UBX (InterPro:IPR001012); contains InterPro domain UAS (InterPro:IPR006577) Range:  from: 6640595    to: 6643058    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g10800.1    Description:  similar to protein binding [Arabidopsis thaliana] (TAIR:AT3G05675.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT3G05675.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO69471.1) Range:  from: 6643305    to: 6644841    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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