Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ARR14(2)                                            <---------ARR14(2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------SPL7        <---------ANAC58                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ARR11(3)             <---------ANAC58          --------->ARR14(3)             --------->ANAC55(2)          <---------ARR14(3)             <---------ANAC55(2)                                        <          <---------GLK1(2)              <---------ANAC46                                    --------    --------->TOE2(3)               --------->MYB52(2)            --------->ARR11(3)      --------->SPL7    --------->TOE1(3)             <---------MYB52(1)    ----------->GT1    ------>ZmHOX2a(1)--------- -ATHB12  --------->ARR11(3)    <---------ZAT6<---------ANAC46 <-----------GT1       <---------------   tataaacctcaagattttggggctacggtttccactgttagtttcgtatcggagagcatagttataaacatctcgtccttcccattcacttgtacggtga  6618000                      <---------ANAC58               --------->YAB1                      <---------ANAC58         --------->TOE2(3)              --------->MYB46(3)      --------->ARR14(2)              ------>ZmHOX2a(2)       <---------ARR14(2)                            --------->YAB1             <------ZmHOX2a(2)     <---------ANAC55(2)       --------->YAB1        <---------YAB1 ----------DOF2<---------ALFIN1    --------->ANAC55(2)      <---------YAB1       --------->YAB1 ->At5g28300<---------ARR14(2)    <---------LBD16    --------->TOE2(3)        --------->YAB1 -->GT1<---------ANAC46         --------->ARR14(2)  <<<<<<<<<ARR1            <-------TEIL ---SPL14   --------->ARR14(2)  <---------ARR14(2)  <<<<<<<<<ARR2   <----------DOF2--------->ICU4   tactttctggtttggatccaccttgtttgccccaaatacggattcaaaaccacaatcttagtatcatcgtcttttaagatgcataataataaaccctcac  6618100                     <---------ANAC58              <---------ARR11(3)                                                  <---------DOF5.7(2)              --------->ARR11(3)                                                 --------->WRKY45             --------->RVE1(1)                                                   --------->WRKY38(1)             <---------RVE1(1)                                                   --------->WRKY12             --------->CCA1(1)                                                   ----------->HVH21             <---------CCA1(1)                                          <------MYB83             --------->GLK1(1)             --------->ANAC58             <------MYB46(1)             <---------GLK1(1)             --------->ANAC58       <---------TOE2(3)<---------TOE2(3)            <---------ARR11(3)         --------->ANAC58       <----------DOF2   --------->DOF5.7(2)            --------->ARR11(3)      --------->REM1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <-- ---------->DOF2     <---------ANAC58  --------->ANAC58       <---------DAG2   <-------GAMYB     ----   aatgaaagacttgagatatcttgacttgtttagaaccatgtaggcaagtaagtttacctagagactttatggataggttttcgttgacgatgatgcccat  6618200                                                                         --------->ARR14(2)                           --------->YAB1                              --------->LBD16                           <---------ICU4                             --------->ANAC55(2)                           -------->ATHB1                             <---------ANAC55(1)                           --------->ATHB12                           <---------ANAC58                  <---------ICU4                                      <---------ANAC46    <---------TOE2(3)     <---------ATHB12                            <---------ANAC58            <-- <---------AHL20(2)  --------->YAB1        <---------ICU4         <----------DOF2      ---------->DOF2 -------AHL20(2)  --------->YAB1          ------>ZmHOX2a(1)  <<<<<<<<<TBF1     ------->TEIL      <--- ----->AHL20(2)--------->WOX13(1)<---------GLK1(2)     <---------At4g35610   <-------TEIL        <---   taaataaacgttgtaatccatcatcacaatcattcgattctctcctaattcccttgctgcttcttcttctttccgtatgtgcatcttcttaaagctctgg  6618300                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  <--      ---------->DOF2                                                                             --- --------DOF2                                                                             ----------- ------ANAC58  --------------->AGL15                                                      <----------DOF2 ------ANAC58 <-----------------AGL1                  ---------->DOF2         ------>ZmHOX2a(1)  <---   ctttctaacaaagcattccagtttttgcaagttaatcgcattgctctcaaacaatgtaaaggaaccctagagacaatgtcctctactagttcctttggaa  6618400               <---------YAB1               ------>ZmHOX2a(1)           <---------SPL7          <---------ANAC58          <---------ANAC58 ----------->HVH21                                                                      ----------->GT1 ------->CCA1(2)                                                                       --------->DAG2 ------>ARR14(2)                                                                 ---------->DOF2 -------ARR14(2)                                                        --------->HSFB2a(2) -------ARR11(3)                                                        <---------HSFB2a(2) ------>ARR11(3)                                   <----------DOF2<---------TOE2(3)   ---------->DOF2 ---------->WRI1                                  <---------DAG2---------->DOF2--------->ANAC58  ---- ------HSFB2a(1)                      <---------KAN4(2)      --------->YAB1    --------->ANAC58  ----   gatttgacattgtcgtcctcattgtgtttttgatacaagggatgttcagaaaccttttgcgactcataaaggttgtagaacaagaaagaaaagtagaaac  6618500                                --------->GLK1(2)                       <-----------GT1                                <-----------ARR10                 <---------CCA1(1)                               <---------GLK1(2)                  <---------RVE1(1)                    ---------->DOF2                              <---------ARR11(3)                   <---------AHL20(2)               ---------->DOF2   <-----------GT1 ----->TOE2(3)    <---------AHL20(2)        <----------DOF2      --------->ARR11(3)         --------- ----->TOE1(3)    --------->AHL20(2)        <---------DAG2      --------->YAB1   ------>ZmHOX2a(1)   cctaaattaagttgggctaattaaaaggcttcagaatctagtcgggctttttgtaaaagccctaaatgatattttctcgtttcctaagaaaaaacagcat  6618600                      --------->ANAC58                      --------->ANAC58                      ---------->DOF2                   <---------ARR14(2)                     --------->ANAC58                   --------->ARR14(2)        <---------ANAC58 --------->ANAC58                 --------->LBD16             <---------ANAC58 --------->ANAC58       <---------ALFIN1                --------->LBD16  --------------->AtSPL8   --------->ANAC46        <-----------GT1               --------->HSFB2a(2)      <---------ICU4    --------->ANAC58     <----------DOF2   <---               <---------HSFB2a(2)     --------->ICU4  <---------SPL7    <----------DOF2         ---- -------------->TaNAC69(2)       <---------------AtSPL8--------->TOE1(2)*TSS ---------->ID1 <--------   gcagtctacgtttctatcccgaaaacgctaataagtgagtactaatttcgttttggtcatacgaaagcaaaaacactttgtcttttaccacttcttcgat  6618700                                                    <-----------HVH21                                                   --------->ANAC46                                                <---------WRKY18(1)                                               ----------->HVH21                                              <-----------HVH21                                             --------->TGA1a                                             <---------O2                                             <---------TGA1a                                             --------->O2                                            <------NtERF2                                           ------>NtERF2                                           --------->ABI4(1)                                          --------->RRTF1(2)                                          --------->RRTF1(3)                                          --------->DREB2C(2)                                          --------->DEAR3(1)                                          --------->RAP2.3(3)                                          <---------DEAR3(1)                                          --------->ATERF1(2)                                          --------->RAP2.6(2)                                         --------->ATERF1(1)                                         --------->RRTF1(1)                                         --------->RAP2.6(1)                                         --------->DEAR4(2)                                         --------->ERF1                                         --------->RAP2.3(1)                                         --------->ORA47(2)                                         <------NtERF2            --------->ANAC46            <---------ATERF1(1)           <---------LBD16              --------->ABI4(1)          <---------At5g28300           ------>NtERF2        --------->ZAT14                <---------ALFIN1        --------->ZAT18                --------->DEAR3(1)           <---------bZIP60(1)        <---------ZAT14 <---------ALFIN1--------->LBD16             --------->bZIP60(1)    <---------TOE1(2)   --------->DEAR3(1)--------->RAP2.3(2)    ----------->HVH21 ------HSFC1(2)        <------NtERF2   --------->ANAC46        ----------->GT1                      - ----->HSFC1(2)       ------>NtERF2   --------->MYB46(3)<---------At4g35610                      ---- -------------WRI1   <---------ALFIN1 <---------LBD16   --------->At4g35610                  --------   acttcccaagttcaccgcaatggccaccgcttcaatcttccccgccgccgtgaccgtcaccagagatgtgacatctcttcttaatccatcttctctgata  6618800                                              <---------MYB52(1)                                  ---           <---------ARR11(3)             ------>ZmHOX2a(1)      --------->TOE1(3)               <---          <---------ICU4              --------->ARR14(2)         --------->TOE2(3)              -----       <---------ICU4                 <---------ARR14(2)  --------->LBD16                       -----      <---------ATHB12          --------->WOX13(1)       --------->ANAC58                      ------      --------->ICU4        --------->At4g35610          --------->LBD16                      <------ ---------->GT1     ---------->DOF2--------->YAB1        --------->ANAC46                     ------- ----->GLK1(2)   ------>ZmHOX2a(1)<---------ATHB12       --------->ANAC58                 --------->At4g35610 ->YAB1--------->YAB1       <---------At4g35610         <---------LBD16                   <---------At4g35610   atcggaaaatcattatctccttcaaagttcagctcaatcaaatcctccgtttcattttcccgcaaaaccctaactccaattcgatactcttcatctcccg  6618900  Previous    Next  AGI:  At4g10740.1    Description:  F-box family protein. Identical to Putative F-box protein At4g10740 [Arabidopsis Thaliana] (GB:O82488); similar to type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein [Arabidopsis thaliana] (TAIR:AT1G65990.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 6617139    to: 6618422    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g10750.1    Description:  HpcH/HpaI aldolase family protein. similar to ALL1 (ALDOLASE LIKE), carbon-carbon lyase/ catalytic [Arabidopsis thaliana] (TAIR:AT4G24080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62931.1); contains InterPro domain HpcH/HpaI aldolase; (InterPro:IPR005000); contains InterPro domain Pyruvate/Phosphoenolpyruvate kinase, catalytic core; (InterPro:IPR015813) Range:  from: 6618672    to: 6619935    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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