Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->ANAC46                                                 <---------LBD16                                               ------>ZmHOX2a(2)                                              --------->CCA1(2)                                              <------ZmHOX2a(2)                                             --------->ARR14(3)                                             <---------ARR11(3)                                             --------->ARR14(2)             <---------ANAC46                                             <---------ARR14(2)     --------->MYB52(1)                                             --------->ARR11(3)   --------->MYB46(3)                                             <---------ARR14(3)   <---------ATHB12                                             <-----------ARR10   ------>MYB83                                             --------->AGP1      ------>MYB46(1)              <------                                       --------->YAB1           --------->WOX13(1)          --------- ------GLK1(2)                      --------->GLK1(1)           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --DOF2                             <---------GLK1(1)  XXXXXXXXXXXXXXXXXXXX>MIR845A        <---------   attttcaaaatttagttccacaattttggaatctagagaaatcagaagatctacggactctaagaccaatcaacgattgtgtagggttttgtttttcttt  6582100                                                         ----------->GT1                                                        <------ZmHOX2a(1)                                                     --------->SPL7                                                  <---------ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  --------->ANAC55(2)     xxxxxxxxxxxxxxxx>smallRNA(i)    --------->TOE2(3)                             <---------ANAC55(2)  --------->GLK1(1) ----DOF2                                         <---------ANAC46   <---------ZAT18       <------MYB46(1) ->ID1                                            <---------ANAC58 --------->ANAC46        <------MYB83 --GT1          <----------DOF2         --------->YAB1 ----------->GT1 <---------GLK1(1)  <---------AtMYB61   ttgttttcttaatcgtttctttggttttgtctgaattggctatcacaattttgcgtaaggagaaaatatagggaactcagaaaatttagggattggtttt  6582200                                                                                     xxxxxxxxxxxxxxxx                                                                                    ------->TEIL                                                                       <------------CBF                  --------->AHL20(1)                                  <---------AHL20(2)                  <---------AHL20(1)            <---------AHL20(2)    --------->ATHB12                  --------->ARR11(3)      --------->YAB1             <---------AHL20(1)                  <---------AHL20(2)     <---------YAB1              --------->AHL20(2)               --------->AHL20(2)      --------->YAB1                <---------AHL20(2)               --------->YAB1         <---------YAB1           --------->YAB1  --------->At4g35610<--         --------->TOE2(3)         --------->ICU4            ------>MYB46(1) ------>ZmHOX2a(2)    ---         ------->GAMYB            --------->ANAC55(2)        ------>MYB83  <---------AGP1   <--------        --------->MYB46(3)        <---------ANAC55(2)      --------->TOE1(2)<---------At4g35610   <--      <-----------GT1        <---------YAB1    --------->AHL20(2)    --------->AHL20(1)    <xxxxxxxxx   tttttgtttaaccacaataatattttgttttctgataagtattatcatattaaatgtagaacctagcataatttattgatctgatgcatcttagtggagt  6582300                                                    <---------TOE2(3)                                                    <---------TOE1(3)                                               --------->YAB1                                               <---------ICU4                                               --------->ATHB51                                               <--------HAHB4              --------->TOE2(3)                <--------ATHB1   ------------>CBF --------->AHL20(2)         -------->HAHB4 xxxxxx>smallRNA(fl3) <-----------TBP          --------->ATHB12                    <---------ANAC58 -------ANAC58--------->TOE1(3)               <---------ATHB51                     <---------ANAC58 ------>MYB52(2)    <---------AHL20(2)        <---------YAB1                    <----------DOF2 -ZAT18<---------ATHB12                       --------->ICU4                  --------->At4g35610 -------ANAC58--------------->AGL15           --------->AHL20(2)              <---------At4g35610<--- xxxxxxxxxsmallRNA(fl3) --------->YAB1      --------->YAB1         <---------TOE2(3)     ------------   tcgtggccaatgactaccttaaatatttataacttcaactatgaaataataattagggtttcaaagactaatgttttctgagctttcttgagacaatttt  6582400                                     --------->RAP2.6(3)                                   <---------SPL7                                                   -                        <---------AHL20(2)                                                         <-                       --------->ARR11(3)                               <---------AHL20(2)        xxx                       <---------ARR11(3)                              <---------AHL20(2)         <--                       <---------AHL20(1) ------>NtERF2                --------->AHL20(2)         <-- ------AHL20(2)   <---------ANAC46<---------ANAC58                 <---------AHL20(2)            ---- >CBF   <-----------HVH21         <---------ANAC58        <-----------TBP                    <-------   taatctcatgggtcatggttttgtatatatttcatgtcttacggctccaaaaacaaacccatatataagttaattttatgttcgaaatctatatttatgt  6582500                                                                            --------->ANAC58        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              --------->DAG2 <---------WRKY12                                                         ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(s)                                       <---------MYB46(3) -------->WRKY18(1)                                                 --------->ALFIN1 ----------HVH21     <xxxxxxxxxxxxxxxxsmallRNA(i)                  --------->ALFIN1                -- xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 <--------P    <xxxxxxxxxxxxxxxxxxx ----MYB83--------->ARR11(3)                       --------->At4g35610<---------ANAC46  xxxxxxxxxxxxx ----MYB46(1)      ------------>CBF                <---------At4g35610<---------HSFB2a(2)       <---- ----->MYB59xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC58   <----- --TOE2(3)<---------ARR11(3)                --------->ZAT6    <xxxxxxxxxxxxxxxxsmallRNA(i)  <--------   aggtcaaacgaagatgtcagtaacaatgggatggagaagaaggctctcactactgctgaatcagttcgggttgtggaaaagcatccatgggttatcacct  6582600                                                                         --------->MYB111(2)                                                                         --------->MYB111(1)                                               <---------------AtSPL8    --------->MYB46(2)                                               --------------->AtSPL3    --------->MYB52(2) ------->HSFB2a(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->MYB46(3) xxxxsmallRNA(fl3)                       --------->ANAC58                <---------MYB46(3)       --- xxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------------>MYB.PH3(2)   ----- ------DOF2                      --------->ATHB12                   --------->LBD16      <---------MYB46(3) ----DAG2                      <------ZmHOX2a(2)   <-------TEIL -------->P<-------GAMYB  --------->MYB52(2) ---GT1            <----------DOF2       --------->ANAC58      <-----------GT1   --------->DEAR3(2)   ttccgaaccatgaagacttgacttttctcttcgatccattggaacggaagaggtacacactgaatttacccgagttagttggaaccgatgtttgttactc  6582700                         --------->CCA1(2)                         <------ZmHOX2a(2)                        --------->ARR11(3)                        <---------ARR14(2)             <---------ANAC46       --------->ZAT18           xxxxxxxxxxxxxxxx>smallRNA(i)          <--------P    --------->AGP1         <-------GAMYB  --------->ARR14(2)        <------MYB46(1)--------->GLK1(1)                   <---------ARR14(2)        <------MYB83  ----------->ARR10                    --------->ZAT14        <---------MYB46(3)          <---------ZAT18        --------->ARR14(2)       <---------AtMYB61<---------ARR11(3)                 <---------ZAT14    <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    --------->LBD16    xxxxxxxxxxxxxxxx>smallRNA(i) <---------ANAC46       <---------ANAC55(2)         ---------->DOF2 < ------->DOF2<---------ANAC58  <---------ZAT14       -------->P      --------->At4g35610     <-------GAMYB ---->ANAC46 <---------ANAC58  --------->ZAT14 <<<<<<<<<TBF1         <---------At4g35610--------->ALFIN1   gaaagacggatggttgcttatgcgaagatccagtttagtggacatgttcttcttcaacccgtatactagggagcttataaacttgccaaagtgtgagttg  6582800                                               <---------ANAC46                                              <---------AtMYB61                                            <---------ANAC46                                            <---------ANAC58                                            <-----------RAV1(1)                                        <---------ANAC58                                  ======================RAV                           <------NtERF2<---------ANAC58              <----------DOF2     <-----------RAV1(2)                      --------->CCA1(2)             <---------ANAC58  --------->REM1(1) <---------ZAT6  <----------DOF2             <---------ANAC58<---------ALFIN1 --------->ALFIN1<---------ARR11(3)     --------->ANAC46     ------>NtERF2<-------TEIL   <---------TOE1(3)   <---------ARR11(3)   ---------->DOF2      ------>NtERF2<---------MYB52(1)<---------ZAT6     --------->ARR11(3) ----------DOF2        <---------ATERF1(1)  <---------ANAC58  --------->ARR11(3)     --------->LBD16   gcctttcaagcgattgctttctcttcggcccctacatcaggtacttgtgtggtgttagcgttaagaccttttacaagatatatcatccgtataagcattt  6582900               <---------ANAC46                                                            ==========           --------->At4g35610                                  <-------TEIL               <------ZmHOX2a(2)    ------>ZmHOX2a(1)                                          --------->AtLEC2          ------->GAMYB   <---------LBD16--------->ZAT18                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ----------->RAV1(2)                               ----------->HVH21   -------->P      --------->MYB46(3)   gctatcctggagcaactgagtggattactcaagaattttcatgctctcttagatttgacccatacatgcatagcaaccttgtctatgccaacgatcactt  6583000  Previous    Next  AGI:  At4g10660.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10695.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15899.1); contains domain PTHR13980 (PTHR13980); contains domain PTHR13980:SF12 (PTHR13980:SF12) Range:  from: 6582531    to: 6583484    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version